Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 4.1e-20 100.5 54 100.0
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 1.7e-18 95.1 54 90.7
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 6.6e-18 93.2 54 92.6
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 8.6e-18 92.8 54 87.0
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 1.1e-17 92.4 54 90.7
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.5e-17 91.3 54 85.2
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 2.5e-17 91.3 54 88.9
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 3.3e-17 90.9 54 87.0
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 3.3e-17 90.9 54 88.9
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 7.2e-17 89.7 54 87.0
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 9.5e-17 89.4 54 87.0
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 1.2e-16 89.0 54 85.2
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 1.2e-16 89.0 52 88.5
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.2e-16 89.0 54 85.2
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 1.6e-16 88.6 54 87.0
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 1.6e-16 88.6 54 88.9
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 1.6e-16 88.6 54 87.0
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.6e-16 88.6 54 85.2
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 2.1e-16 88.2 54 83.3
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 2.1e-16 88.2 54 87.0
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 3.6e-16 87.4 54 85.2
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 4.7e-16 87.0 54 85.2
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 4.7e-16 87.0 54 87.0
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 6.1e-16 86.7 54 85.2
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 6.1e-16 86.7 54 85.2
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 6.1e-16 86.7 54 85.2
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 6.1e-16 86.7 54 85.2
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 6.1e-16 86.7 54 85.2
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 6.1e-16 86.7 54 83.3
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 8.0e-16 86.3 54 83.3
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 8.0e-16 86.3 54 81.5
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 8.0e-16 86.3 54 85.2
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 8.0e-16 86.3 54 85.2
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 8.0e-16 86.3 54 83.3
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.0e-15 85.9 54 79.6
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.0e-15 85.9 54 85.2
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.0e-15 85.9 54 85.2
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 83.3
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 83.3
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 83.3
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 1.4e-15 85.5 54 83.3
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 83.3
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 85.2
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 85.2
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 1.8e-15 85.1 54 85.2
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.3e-15 84.7 54 83.3
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.3e-15 84.7 54 83.3
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 2.3e-15 84.7 54 83.3
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 3.0e-15 84.3 54 81.5
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 83.3
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 81.5
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 4.0e-15 84.0 54 81.5
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 6.8e-15 83.2 54 81.5
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 8.9e-15 82.8 54 81.5
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 8.9e-15 82.8 54 79.6
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.2e-14 82.4 54 77.8
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.2e-14 82.4 56 82.1
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 77.8
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 2.0e-14 81.6 54 81.5
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.6e-14 81.3 54 77.8
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 3.4e-14 80.9 54 81.5
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 77.8
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 4.4e-14 80.5 54 77.8
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 5.7e-14 80.1 52 78.8
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 7.5e-14 79.7 56 78.6
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.3e-13 79.0 54 77.8
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 2.2e-13 78.2 53 75.5
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 2.2e-13 78.2 54 79.6
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 2.2e-13 78.2 54 79.6
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 2.2e-13 78.2 54 75.9
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 2.8e-13 77.8 54 83.3
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 4.9e-13 77.0 54 77.8
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 75.9
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 6.3e-13 76.6 54 75.9
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 8.3e-13 76.3 78 60.3
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.1e-12 75.9 54 74.1
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 1.4e-12 75.5 42 95.2
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 1.4e-12 75.5 67 65.7
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 74.1
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 74.1
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 74.1
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 74.1
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 74.1
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.8e-12 75.1 54 74.1
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 5.4e-12 73.6 54 72.2
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 5.4e-12 73.6 54 72.2
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 5.4e-12 73.6 58 74.1
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 1.2e-11 72.4 51 78.4
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.2e-11 72.4 54 70.4
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 1.6e-11 72.0 54 72.2
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 2.0e-11 71.6 54 72.2
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 2.7e-11 71.2 42 90.5
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 3.5e-11 70.9 54 72.2
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 3.5e-11 70.9 42 90.5
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 4.5e-11 70.5 54 70.4
Hma1.2p1_0066F.1_g035670 Hydrangea macrophylla HOM05D004818 ORTHO05D005444 5.9e-11 70.1 49 71.4
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 5.9e-11 70.1 54 68.5
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 7.8e-11 69.7 54 74.1
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.0e-10 69.3 50 74.0
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 1.0e-10 69.3 54 74.1
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.3e-10 68.9 54 70.4
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 1.3e-10 68.9 54 70.4
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 1.3e-10 68.9 48 72.9
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 1.3e-10 68.9 52 71.2
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 1.7e-10 68.6 58 67.2
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 1.7e-10 68.6 54 68.5
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 2.3e-10 68.2 47 76.6
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 2.9e-10 67.8 54 72.2
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 5.0e-10 67.0 51 74.5
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 72.2
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 72.2
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 72.2
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 8.6e-10 66.2 54 72.2
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 1.5e-09 65.5 38 89.5
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.5e-09 65.5 39 87.2
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.9e-09 65.1 54 66.7
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.9e-09 65.1 40 85.0
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 4.3e-09 63.9 39 82.1
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 5.6e-09 63.5 38 84.2
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 7.3e-09 63.2 38 81.6
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 9.5e-09 62.8 43 74.4
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.6e-08 62.0 43 79.1
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.1e-08 61.6 77 51.9
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 2.1e-08 61.6 38 86.8
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 4.7e-08 60.5 38 81.6
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 4.7e-08 60.5 39 74.4
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 6.1e-08 60.1 42 71.4
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 6.1e-08 60.1 38 78.9
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 1.0e-07 59.3 54 68.5
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 1.0e-07 59.3 46 65.2
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.4e-07 58.9 54 63.0
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 1.4e-07 58.9 49 65.3
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.8e-07 58.5 35 85.7
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 2.3e-07 58.2 49 67.3
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 3.1e-07 57.8 49 67.3
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 5.2e-07 57.0 54 66.7
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 5.2e-07 57.0 38 73.7
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 5.2e-07 57.0 54 66.7
Mapoly0066s0039 Marchantia polymorpha HOM05D004818 ORTHO05D005444 5.2e-07 57.0 46 65.2
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 6.8e-07 56.6 44 65.9
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 6.8e-07 56.6 41 70.7
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 8.9e-07 56.2 43 72.1
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 1.2e-06 55.8 49 65.3
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 1.5e-06 55.5 36 77.8
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 2.0e-06 55.1 38 71.1
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 2.6e-06 54.7 38 73.7
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 5.8e-06 53.5 49 69.4
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 5.8e-06 53.5 49 69.4
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 5.8e-06 53.5 49 69.4
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 5.8e-06 53.5 49 69.4
CDE05G2892 Ceratophyllum demersum HOM05D000830 ORTHO05D002187 5.8e-06 53.5 48 64.6
Pp3c1_20190 Physcomitrium patens HOM05D004818 ORTHO05D005444 7.5e-06 53.1 41 70.7


User provided reference genes

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