Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0268311 Rosa chinensis HOM05D003854 ORTHO05D004415 3.5e-35 151.0 72 100.0
PGR042G3425 Punica granatum HOM05D003854 ORTHO05D004415 2.1e-19 98.6 59 74.6
Sc18g0005420 Simmondsia chinensis HOM05D003854 ORTHO05D004415 1.3e-18 95.9 55 80.0
Eucgr.G01738 Eucalyptus grandis HOM05D003854 ORTHO05D004415 6.7e-18 93.6 59 74.6
Rhsim05G0067900 Rhododendron simsii HOM05D003854 ORTHO05D004415 8.7e-18 93.2 59 76.3
EL10Ac9g21623 Beta vulgaris HOM05D003854 ORTHO05D004415 1.1e-17 92.8 59 72.9
Prupe.8G083500 Prunus persica HOM05D003854 ORTHO05D004415 1.9e-17 92.0 59 78.0
Thecc.10G037600 Theobroma cacao HOM05D003854 ORTHO05D004415 1.9e-17 92.0 59 74.6
FvH4_2g10640 Fragaria vesca HOM05D003854 ORTHO05D004415 2.5e-17 91.7 59 76.3
QL11p046566 Quercus lobata HOM05D003854 ORTHO05D004415 2.5e-17 91.7 58 74.1
Atru.chr5.3157 Acer truncatum HOM05D003854 ORTHO05D004415 3.3e-17 91.3 59 74.6
Atru.chr5.3170 Acer truncatum HOM05D003854 ORTHO05D004415 3.3e-17 91.3 59 74.6
AUR62016846 Chenopodium quinoa HOM05D003854 ORTHO05D004415 3.3e-17 91.3 59 69.5
Gorai.003G010800 Gossypium raimondii HOM05D003854 ORTHO05D004415 3.3e-17 91.3 65 66.2
Gohir.A02G169600 Gossypium hirsutum HOM05D003854 ORTHO05D004415 4.3e-17 90.9 65 64.6
COL.COLO4_21950 Corchorus olitorius HOM05D003854 ORTHO05D004415 5.7e-17 90.5 59 71.2
MELO3C002788.2 Cucumis melo HOM05D003854 ORTHO05D004415 5.7e-17 90.5 59 74.6
RcHm_v2.0_Chr6g0268341 Rosa chinensis HOM05D003854 ORTHO05D004415 9.7e-17 89.7 59 74.6
Thecc.01G021700 Theobroma cacao HOM05D003854 ORTHO05D004415 9.7e-17 89.7 59 69.5
GSVIVG01024163001 Vitis vinifera HOM05D003854 ORTHO05D004415 9.7e-17 89.7 58 75.9
CsaV3_7G000470 Cucumis sativus L. HOM05D003854 ORTHO05D004415 1.3e-16 89.4 59 74.6
Duzib248G1248 Durio zibethinus HOM05D003854 ORTHO05D004415 1.3e-16 89.4 59 74.6
FAN15G1017 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.3e-16 89.4 59 74.6
FAN27G2026 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.3e-16 89.4 59 74.6
Gohir.D03G010400 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.3e-16 89.4 65 64.6
Sabra09G0096200 Salix brachista HOM05D003854 ORTHO05D004415 1.3e-16 89.4 57 75.4
Sp3g29800 Schrenkiella parvula HOM05D003854 ORTHO05D004415 1.3e-16 89.4 59 69.5
Eucgr.H01470 Eucalyptus grandis HOM05D003854 ORTHO05D004415 1.6e-16 89.0 59 69.5
Potri.004G163600 Populus trichocarpa HOM05D003854 ORTHO05D004415 1.6e-16 89.0 57 75.4
Potri.009G125200 Populus trichocarpa HOM05D003854 ORTHO05D004415 1.6e-16 89.0 57 73.7
TWI38G0305 Tripterygium wilfordii HOM05D003854 ORTHO05D004415 1.6e-16 89.0 59 71.2
CSS0003544 Camellia sinensis var. sinensis HOM05D003854 ORTHO05D004415 2.2e-16 88.6 59 72.9
Gohir.D10G253300 Gossypium hirsutum HOM05D003854 ORTHO05D004415 2.2e-16 88.6 59 69.5
Gorai.011G293600 Gossypium raimondii HOM05D003854 ORTHO05D004415 2.2e-16 88.6 59 69.5
MD05G1054700 Malus domestica HOM05D003854 ORTHO05D004415 2.2e-16 88.6 59 74.6
CARHR106750 Cardamine hirsuta HOM05D003854 ORTHO05D004415 2.8e-16 88.2 59 67.8
CiPaw.06G127600 Carya illinoinensis HOM05D003854 ORTHO05D004415 2.8e-16 88.2 59 71.2
AUR62010373 Chenopodium quinoa HOM05D003854 ORTHO05D004415 2.8e-16 88.2 59 67.8
Ciclev10028796m.g Citrus clementina HOM05D003854 ORTHO05D004415 2.8e-16 88.2 59 72.9
Manes.04G064400 Manihot esculenta HOM05D003854 ORTHO05D004415 2.8e-16 88.2 59 71.2
AL6G49210 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 3.7e-16 87.8 59 66.1
AT2G16530 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 3.7e-16 87.8 59 66.1
Peaxi162Scf00016g00041 Petunia axillaris HOM05D003854 ORTHO05D004415 3.7e-16 87.8 59 72.9
Sp3g29780 Schrenkiella parvula HOM05D003854 ORTHO05D004415 3.7e-16 87.8 59 67.8
vmacro17417 Vaccinium macrocarpon HOM05D003854 ORTHO05D004415 3.7e-16 87.8 59 71.2
BcaC01g03005 Brassica carinata HOM05D003854 ORTHO05D004415 4.8e-16 87.4 59 67.8
C03p57260 Brassica napus HOM05D003854 ORTHO05D004415 4.8e-16 87.4 59 67.8
BolC3t18002H Brassica oleracea HOM05D003854 ORTHO05D004415 4.8e-16 87.4 59 67.8
COL.COLO4_10619 Corchorus olitorius HOM05D003854 ORTHO05D004415 4.8e-16 87.4 59 71.2
BcaB03g16370 Brassica carinata HOM05D003854 ORTHO05D004415 6.3e-16 87.0 59 69.5
Haze_02230 Corylus avellana HOM05D003854 ORTHO05D004415 6.3e-16 87.0 59 71.2
Thecc.02G073800 Theobroma cacao HOM05D003854 ORTHO05D004415 6.3e-16 87.0 59 71.2
Hma1.2p1_0066F.1_g035740 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 8.2e-16 86.7 58 69.0
Nn5g29249 Nelumbo nucifera HOM05D003854 ORTHO05D004415 8.2e-16 86.7 59 71.2
Sed0011434 Sechium edule HOM05D003854 ORTHO05D004415 8.2e-16 86.7 59 71.2
arahy.Tifrunner.gnm1.ann1.3VNM1Z Arachis hypogaea HOM05D003854 ORTHO05D004415 1.1e-15 86.3 63 61.9
Sabra04G0109800 Salix brachista HOM05D003854 ORTHO05D004415 1.1e-15 86.3 56 73.2
A03p45880 Brassica napus HOM05D003854 ORTHO05D004415 1.4e-15 85.9 59 66.1
Duzib147G1035 Durio zibethinus HOM05D003854 ORTHO05D004415 1.4e-15 85.9 59 69.5
Thhalv10022773m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 1.4e-15 85.9 59 66.1
arahy.Tifrunner.gnm1.ann1.QESS4Q Arachis hypogaea HOM05D003854 ORTHO05D004415 1.8e-15 85.5 63 61.9
MD10G1062200 Malus domestica HOM05D003854 ORTHO05D004415 1.8e-15 85.5 59 72.9
AL3G49110 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 2.4e-15 85.1 59 64.4
CANSAT11G1548 Cannabis sativa HOM05D003854 ORTHO05D004415 2.4e-15 85.1 59 71.2
Duzib187G0007 Durio zibethinus HOM05D003854 ORTHO05D004415 2.4e-15 85.1 59 67.8
Solyc01g110460.4 Solanum lycopersicum HOM05D003854 ORTHO05D004415 2.4e-15 85.1 59 69.5
Sopen01g052590 Solanum pennellii HOM05D003854 ORTHO05D004415 2.4e-15 85.1 59 69.5
MSTRG.16879 Avicennia marina HOM05D003854 ORTHO05D004415 3.1e-15 84.7 59 71.2
A09p11030 Brassica napus HOM05D003854 ORTHO05D004415 3.1e-15 84.7 59 66.1
BraA09t36743Z Brassica rapa HOM05D003854 ORTHO05D004415 3.1e-15 84.7 59 66.1
Dinv41992 Davidia involucrata HOM05D003854 ORTHO05D004415 3.1e-15 84.7 59 69.5
HPP92_014428 Vanilla planifolia HOM05D003854 ORTHO05D004415 3.1e-15 84.7 59 64.4
arahy.Tifrunner.gnm1.ann1.E6R97N Arachis hypogaea HOM05D003854 ORTHO05D004415 4.1e-15 84.3 63 60.3
BcaC04g23013 Brassica carinata HOM05D003854 ORTHO05D004415 4.1e-15 84.3 59 67.8
BcaC04g23014 Brassica carinata HOM05D003854 ORTHO05D004415 4.1e-15 84.3 59 67.8
C09p13040 Brassica napus HOM05D003854 ORTHO05D004415 4.1e-15 84.3 59 67.8
BolC9t54197H Brassica oleracea HOM05D003854 ORTHO05D004415 4.1e-15 84.3 59 67.8
CDE04G0582 Ceratophyllum demersum HOM05D003854 ORTHO05D004415 4.1e-15 84.3 59 66.1
ClCG02G004480 Citrullus lanatus HOM05D003854 ORTHO05D004415 4.1e-15 84.3 59 67.8
Lj3g0001283 Lotus japonicus HOM05D003854 ORTHO05D004415 4.1e-15 84.3 57 68.4
BcaC06g36152 Brassica carinata HOM05D003854 ORTHO05D004415 5.3e-15 84.0 59 66.1
A07p04500 Brassica napus HOM05D003854 ORTHO05D004415 5.3e-15 84.0 59 66.1
C07p07190 Brassica napus HOM05D003854 ORTHO05D004415 5.3e-15 84.0 59 66.1
BolC7t41138H Brassica oleracea HOM05D003854 ORTHO05D004415 5.3e-15 84.0 59 66.1
Migut.H02258 Erythranthe guttata HOM05D003854 ORTHO05D004415 5.3e-15 84.0 59 67.8
Hma1.2p1_0218F.1_g092290 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 5.3e-15 84.0 59 64.4
CAN.G170.108 Capsicum annuum HOM05D003854 ORTHO05D004415 6.9e-15 83.6 59 69.5
Gohir.A13G086535 Gossypium hirsutum HOM05D003854 ORTHO05D004415 6.9e-15 83.6 59 64.4
Gohir.D13G096525 Gossypium hirsutum HOM05D003854 ORTHO05D004415 6.9e-15 83.6 59 64.4
THA.LOC104807290 Tarenaya hassleriana HOM05D003854 ORTHO05D004415 6.9e-15 83.6 59 64.4
VMungo1127G2166 Vigna mungo HOM05D003854 ORTHO05D004415 6.9e-15 83.6 63 60.3
AT1G72590 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 9.0e-15 83.2 59 61.0
BraA07t28241Z Brassica rapa HOM05D003854 ORTHO05D004415 9.0e-15 83.2 58 63.8
Ca_20939_v3 Cicer arietinum L. HOM05D003854 ORTHO05D004415 9.0e-15 83.2 63 60.3
Sp3g29790 Schrenkiella parvula HOM05D003854 ORTHO05D004415 9.0e-15 83.2 59 64.4
arahy.Tifrunner.gnm1.ann1.29MT7J Arachis hypogaea HOM05D003854 ORTHO05D004415 1.2e-14 82.8 63 60.3
A03p45890 Brassica napus HOM05D003854 ORTHO05D004415 1.2e-14 82.8 59 67.8
TAR376G0190 Trochodendron aralioides HOM05D003854 ORTHO05D004415 1.2e-14 82.8 59 67.8
HanXRQChr15g0478351 Helianthus annuus HOM05D003854 ORTHO05D004415 1.5e-14 82.4 65 60.0
SEGI_09637 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 1.5e-14 82.4 57 61.4
BraA03t13718Z Brassica rapa HOM05D003854 ORTHO05D004415 2.0e-14 82.0 59 64.4
Carub.0003s3031 Capsella rubella HOM05D003854 ORTHO05D004415 2.0e-14 82.0 59 64.4
Medtr4g072070 Medicago truncatula HOM05D003854 ORTHO05D004415 2.0e-14 82.0 63 60.3
BcaC01g03007 Brassica carinata HOM05D003854 ORTHO05D004415 2.6e-14 81.6 59 62.7
C03p57250 Brassica napus HOM05D003854 ORTHO05D004415 2.6e-14 81.6 59 62.7
Thhalv10000231m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 2.6e-14 81.6 59 66.1
Psat7g139560 Pisum sativum HOM05D003854 ORTHO05D004415 2.6e-14 81.6 63 60.3
Glyma.11G110300 Glycine max HOM05D003854 ORTHO05D004415 3.4e-14 81.3 63 60.3
TPR.G28160 Trifolium pratense HOM05D003854 ORTHO05D004415 3.4e-14 81.3 63 60.3
Aqoxy6G02342 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 5.9e-14 80.5 59 66.1
BcaB08g34654 Brassica carinata HOM05D003854 ORTHO05D004415 5.9e-14 80.5 59 64.4
Aqoxy3G00105 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 1.0e-13 79.7 59 66.1
Lalb_Chr01g0002121 Lupinus albus HOM05D003854 ORTHO05D004415 1.0e-13 79.7 63 58.7
SalBow3G0187 Salvia bowleyana HOM05D003854 ORTHO05D004415 1.0e-13 79.7 59 62.7
Aa31LG8G13840 Aethionema arabicum HOM05D003854 ORTHO05D004415 1.7e-13 79.0 59 66.1
Cpa.g.sc150.10 Carica papaya HOM05D003854 ORTHO05D004415 1.7e-13 79.0 59 62.7
Cc02_g16850 Coffea canephora HOM05D003854 ORTHO05D004415 1.7e-13 79.0 59 64.4
arahy.Tifrunner.gnm1.ann1.DJ2H3Y Arachis hypogaea HOM05D003854 ORTHO05D004415 2.9e-13 78.2 59 62.7
Nitab4.5_0005266g0010 Nicotiana tabacum HOM05D003854 ORTHO05D004415 2.9e-13 78.2 55 70.9
ATR0149G029 Amborella trichopoda HOM05D003854 ORTHO05D004415 6.5e-13 77.0 57 59.6
Gohir.A10G241100 Gossypium hirsutum HOM05D003854 ORTHO05D004415 6.5e-13 77.0 50 70.0
Lsat_1_v5_gn_3_44581 Lactuca sativa HOM05D003854 ORTHO05D004415 6.5e-13 77.0 62 58.1
Os04g0576800 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 6.5e-13 77.0 57 59.6
Aa31LG10G12850 Aethionema arabicum HOM05D003854 ORTHO05D004415 8.5e-13 76.6 59 64.4
HanXRQChr17g0544071 Helianthus annuus HOM05D003854 ORTHO05D004415 8.5e-13 76.6 65 56.9
Lsat_1_v5_gn_3_44541 Lactuca sativa HOM05D003854 ORTHO05D004415 8.5e-13 76.6 65 55.4
Lj5A188T38 Lonicera japonica HOM05D003854 ORTHO05D004415 8.5e-13 76.6 50 72.0
PSO541G5287 Papaver somniferum HOM05D003854 ORTHO05D004415 1.1e-12 76.3 59 64.4
FAN24G1697 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.4e-12 75.9 57 68.4
Zm00001eb428540 Zea mays HOM05D003854 ORTHO05D004415 1.4e-12 75.9 57 57.9
Oeu060416.1 Olea europaea HOM05D003854 ORTHO05D004415 1.9e-12 75.5 59 61.0
HanXRQChr17g0544321 Helianthus annuus HOM05D003854 ORTHO05D004415 2.5e-12 75.1 65 55.4
PSO675G2881 Papaver somniferum HOM05D003854 ORTHO05D004415 3.2e-12 74.7 59 61.0
GSVIVG01018810001 Vitis vinifera HOM05D003854 ORTHO05D004415 9.4e-12 73.2 59 61.0
arahy.Tifrunner.gnm1.ann1.JJ9I6U Arachis hypogaea HOM05D003854 ORTHO05D004415 1.2e-11 72.8 56 62.5
TAR628G1389 Trochodendron aralioides HOM05D003854 ORTHO05D004415 1.6e-11 72.4 57 63.2
Lsat_1_v5_gn_3_44301 Lactuca sativa HOM05D003854 ORTHO05D004415 2.1e-11 72.0 58 58.6
Pp3c2_14820 Physcomitrium patens HOM05D003854 ORTHO05D004415 2.1e-11 72.0 59 54.2
Os07g0493400 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 3.6e-11 71.2 57 56.1
SMO367G0753 Selaginella moellendorffii HOM05D003854 ORTHO05D004415 7.9e-11 70.1 63 54.0
AT3G43840 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 1.4e-10 69.3 46 67.4
Hund00184 Selenicereus undatus HOM05D003854 ORTHO05D004415 2.0e-09 65.5 44 70.5
Mapoly0130s0019 Marchantia polymorpha HOM05D003854 ORTHO05D004415 7.4e-09 63.5 57 52.6
unitig_32.g11228 Utricularia gibba HOM05D003854 ORTHO05D004415 8.2e-08 60.1 59 50.8
FvH4_2g10631 Fragaria vesca HOM05D003854 ORTHO05D004415 3.1e-07 58.2 32 87.5
SGA_v2.0_scaffold2G00942 Striga asiatica HOM05D003854 ORTHO05D004415 1.5e-06 55.8 38 68.4
Phvul.011G038300 Phaseolus vulgaris HOM05D003854 ORTHO05D004415 2.0e-06 55.5 53 52.8
Actinidia20473 Actinidia chinensis HOM05D003854 ORTHO05D004415 4.5e-06 54.3 37 75.7


User provided reference genes

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