Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0268111 Rosa chinensis HOM05D000002 ORTHO05D001134 6.9e-69 263.8 133 100.0
RcHm_v2.0_Chr1g0324761 Rosa chinensis HOM05D000002 ORTHO05D001134 1.9e-34 149.4 111 65.8
RcHm_v2.0_Chr7g0188321 Rosa chinensis HOM05D000002 ORTHO05D001134 1.9e-34 149.4 117 63.2
RcHm_v2.0_Chr1g0317481 Rosa chinensis HOM05D000002 ORTHO05D001134 2.3e-32 142.5 106 66.0
RcHm_v2.0_Chr5g0045461 Rosa chinensis HOM05D000002 ORTHO05D001134 2.3e-32 142.5 106 66.0
RcHm_v2.0_Chr1g0375621 Rosa chinensis HOM05D000002 ORTHO05D001134 6.5e-27 124.4 105 56.2
RcHm_v2.0_Chr1g0365511 Rosa chinensis HOM05D000002 ORTHO05D001134 1.8e-21 106.3 79 64.6
RcHm_v2.0_Chr3g0453771 Rosa chinensis HOM05D000002 ORTHO05D001134 1.8e-21 106.3 79 64.6
FvH4_2g02290 Fragaria vesca HOM05D000002 ORTHO05D001134 2.4e-21 105.9 109 45.0
RcHm_v2.0_Chr1g0365141 Rosa chinensis HOM05D000002 ORTHO05D001134 2.5e-18 95.9 109 45.9
RcHm_v2.0_Chr7g0181791 Rosa chinensis HOM05D000002 ORTHO05D001134 2.5e-18 95.9 80 58.8
RcHm_v2.0_Chr3g0496651 Rosa chinensis HOM05D000002 ORTHO05D001134 5.5e-18 94.7 80 57.5
RcHm_v2.0_Chr1g0322601 Rosa chinensis HOM05D000002 ORTHO05D001134 7.2e-18 94.4 79 58.2
MD15G1059300 Malus domestica HOM05D000002 ORTHO05D001134 1.2e-15 87.0 105 41.9
MD04G1043300 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-15 86.7 108 43.5
FvH4_5g30231 Fragaria vesca HOM05D000002 ORTHO05D001134 2.6e-15 85.9 83 50.6
FvH4_3g14801 Fragaria vesca HOM05D000002 ORTHO05D001134 3.4e-15 85.5 82 51.2
RcHm_v2.0_Chr6g0306511 Rosa chinensis HOM05D000002 ORTHO05D001134 1.7e-14 83.2 104 44.2
RcHm_v2.0_Chr2g0086291 Rosa chinensis HOM05D000002 ORTHO05D001134 2.2e-14 82.8 107 40.2
RcHm_v2.0_Chr6g0304521 Rosa chinensis HOM05D000002 ORTHO05D001134 3.7e-14 82.0 107 39.3
FvH4_7g09082 Fragaria vesca HOM05D000002 ORTHO05D001134 4.9e-14 81.6 77 51.9
RcHm_v2.0_Chr3g0468531 Rosa chinensis HOM05D000002 ORTHO05D001134 4.9e-14 81.6 110 38.2
MD15G1002900 Malus domestica HOM05D000002 ORTHO05D001134 6.3e-14 81.3 107 43.0
RcHm_v2.0_Chr3g0478981 Rosa chinensis HOM05D000002 ORTHO05D001134 6.3e-14 81.3 108 41.7
MD10G1072300 Malus domestica HOM05D000005 ORTHO05D010497 2.4e-13 79.3 113 38.1
RcHm_v2.0_Chr1g0383431 Rosa chinensis HOM05D000002 ORTHO05D001134 2.4e-13 79.3 120 40.8
FvH4_1g29941 Fragaria vesca HOM05D000002 ORTHO05D001134 3.2e-13 79.0 75 50.7
MD02G1100700 Malus domestica HOM05D000002 ORTHO05D001134 4.1e-13 78.6 105 40.0
MD03G1045100 Malus domestica HOM05D000002 ORTHO05D001134 5.9e-12 74.7 105 37.1
RcHm_v2.0_Chr1g0368471 Rosa chinensis HOM05D000002 ORTHO05D001134 7.8e-12 74.3 105 37.1
RcHm_v2.0_Chr5g0076631 Rosa chinensis HOM05D000002 ORTHO05D001134 7.8e-12 74.3 105 41.0
RcHm_v2.0_Chr5g0001181 Rosa chinensis HOM05D000002 ORTHO05D001134 1.0e-11 73.9 107 41.1
Ah.03g146900 Amaranthus hybridus HOM05D000002 ORTHO05D001134 1.3e-11 73.6 113 33.6
RcHm_v2.0_Chr5g0082051 Rosa chinensis HOM05D000002 ORTHO05D001134 2.3e-11 72.8 105 37.1
Migut.M00507 Erythranthe guttata HOM05D000002 ORTHO05D001134 3.9e-11 72.0 107 34.6
RcHm_v2.0_Chr1g0336961 Rosa chinensis HOM05D000002 ORTHO05D001134 3.9e-11 72.0 107 32.7
RcHm_v2.0_Chr3g0496001 Rosa chinensis HOM05D000002 ORTHO05D001134 5.0e-11 71.6 105 36.2
RcHm_v2.0_Chr3g0467151 Rosa chinensis HOM05D000002 ORTHO05D001134 6.6e-11 71.2 76 43.4
RcHm_v2.0_Chr4g0390941 Rosa chinensis HOM05D000002 ORTHO05D001134 1.9e-10 69.7 101 41.6
CANSAT01G0629 Cannabis sativa HOM05D000002 ORTHO05D001134 4.3e-10 68.6 107 35.5
CANSAT56G2162 Cannabis sativa HOM05D000002 ORTHO05D001134 5.6e-10 68.2 106 34.0
AL85U10020 Arabidopsis lyrata HOM05D000587 ORTHO05D001561 9.5e-10 67.4 128 32.8
FvH4_2g15841 Fragaria vesca HOM05D000002 ORTHO05D001134 9.5e-10 67.4 117 36.8
RcHm_v2.0_Chr5g0079181 Rosa chinensis HOM05D000002 ORTHO05D001134 9.5e-10 67.4 116 34.5
TPR.G8661 Trifolium pratense HOM05D000002 ORTHO05D000001 9.5e-10 67.4 102 37.3
Atru.chr13.1760 Acer truncatum HOM05D000002 ORTHO05D001134 1.2e-09 67.0 123 28.5
RcHm_v2.0_Chr1g0348501 Rosa chinensis HOM05D000002 ORTHO05D001134 1.2e-09 67.0 104 34.6
RcHm_v2.0_Chr7g0181641 Rosa chinensis HOM05D000002 ORTHO05D001134 1.2e-09 67.0 68 48.5
AUR62032617 Chenopodium quinoa HOM05D000202 ORTHO05D001134 1.6e-09 66.6 115 28.7
Sabra11G0076200 Salix brachista HOM05D000002 ORTHO05D001134 1.6e-09 66.6 99 33.3
AUR62040346 Chenopodium quinoa HOM05D000002 ORTHO05D001134 2.8e-09 65.9 99 38.4
CANSAT35G0076 Cannabis sativa HOM05D000002 ORTHO05D001134 3.6e-09 65.5 117 32.5
FvH4_2g05985 Fragaria vesca HOM05D000002 ORTHO05D001134 3.6e-09 65.5 105 36.2
RcHm_v2.0_Chr6g0255561 Rosa chinensis HOM05D000002 ORTHO05D001134 3.6e-09 65.5 105 33.3
RcHm_v2.0_Chr2g0173271 Rosa chinensis HOM05D000002 ORTHO05D001134 4.7e-09 65.1 105 33.3
RcHm_v2.0_Chr6g0266491 Rosa chinensis HOM05D000002 ORTHO05D001134 4.7e-09 65.1 85 42.4
TPR.G34101 Trifolium pratense HOM05D000002 ORTHO05D001134 4.7e-09 65.1 121 33.1
RcHm_v2.0_Chr5g0021461 Rosa chinensis HOM05D000002 ORTHO05D001134 6.1e-09 64.7 105 33.3
Sabra18G0065300 Salix brachista HOM05D000002 ORTHO05D001134 6.1e-09 64.7 99 32.3
ECA232G2889 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-09 64.3 112 33.9
ECA232G4604 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-09 64.3 99 32.3
ECA240G3666 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.0e-09 64.3 99 33.3
Sabra02G0128400 Salix brachista HOM05D000002 ORTHO05D001134 8.0e-09 64.3 77 40.3
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 8.0e-09 64.3 77 40.3
Sabra05G0004000 Salix brachista HOM05D000311 ORTHO05D000183 8.0e-09 64.3 77 40.3
Sabra05G0109400 Salix brachista HOM05D000002 ORTHO05D001134 8.0e-09 64.3 77 40.3
Sabra11G0084000 Salix brachista HOM05D000002 ORTHO05D001134 8.0e-09 64.3 77 40.3
Sabra16G0164900 Salix brachista HOM05D000002 ORTHO05D001134 8.0e-09 64.3 77 40.3
Sabra16G0175400 Salix brachista HOM05D000027 ORTHO05D001134 8.0e-09 64.3 77 40.3
FvH4_3g33631 Fragaria vesca HOM05D000002 ORTHO05D001134 1.0e-08 63.9 105 33.3
RcHm_v2.0_Chr1g0378491 Rosa chinensis HOM05D000002 ORTHO05D001134 1.0e-08 63.9 43 76.7
FvH4_2g18261 Fragaria vesca HOM05D000002 ORTHO05D001134 1.4e-08 63.5 109 33.0
MD08G1232100 Malus domestica HOM05D000002 ORTHO05D001134 1.4e-08 63.5 98 33.7
Sabra19G0009600 Salix brachista HOM05D000002 ORTHO05D001134 1.4e-08 63.5 99 32.3
CANSAT01G1051 Cannabis sativa HOM05D000002 ORTHO05D001134 1.8e-08 63.2 107 34.6
Sabra01G0088800 Salix brachista HOM05D000002 ORTHO05D001134 1.8e-08 63.2 77 39.0
Sabra11G0092000 Salix brachista HOM05D000002 ORTHO05D001134 1.8e-08 63.2 99 32.3
CSS0043616 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 2.3e-08 62.8 107 32.7
ECA236G4726 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-08 62.8 119 31.1
ECA238G4751 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.3e-08 62.8 99 32.3
Sabra04G0091300 Salix brachista HOM05D000002 ORTHO05D001134 2.3e-08 62.8 77 39.0
Sabra09G0001500 Salix brachista HOM05D008748 ORTHO05D000649 2.3e-08 62.8 77 39.0
CSS0013561 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 3.1e-08 62.4 107 32.7
CANSAT35G0560 Cannabis sativa HOM05D000002 ORTHO05D001134 3.1e-08 62.4 103 34.0
FvH4_4g17672 Fragaria vesca HOM05D000002 ORTHO05D001134 3.1e-08 62.4 97 37.1
CSS0015894 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
CSS0017973 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
CSS0019952 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
CSS0021489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
CSS0031421 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
CSS0032029 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
CSS0040386 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
CSS0044748 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 107 32.7
ECA232G2907 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.0e-08 62.0 99 32.3
ECA233G4811 Erigeron canadensis HOM05D000002 ORTHO05D001134 4.0e-08 62.0 99 33.3
Sabra11G0075700 Salix brachista HOM05D000002 ORTHO05D001134 4.0e-08 62.0 99 30.3
ECA232G3032 Erigeron canadensis HOM05D000002 ORTHO05D001134 5.2e-08 61.6 99 33.3
ECA234G2496 Erigeron canadensis HOM05D000327 ORTHO05D001134 5.2e-08 61.6 99 34.3
PSO731G0088 Papaver somniferum HOM05D000002 ORTHO05D001134 5.2e-08 61.6 96 34.4
ECA238G0421 Erigeron canadensis HOM05D000122 ORTHO05D002085 6.8e-08 61.2 99 33.3
ECA247G2076 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.8e-08 61.2 99 31.3
PSO782G2391 Papaver somniferum HOM05D000002 ORTHO05D001134 6.8e-08 61.2 103 32.0
Sabra05G0016200 Salix brachista HOM05D000002 ORTHO05D001134 6.8e-08 61.2 99 30.3
CSS0001359 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 8.9e-08 60.8 107 32.7
CSS0005787 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 8.9e-08 60.8 107 32.7
CSS0045046 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 8.9e-08 60.8 107 32.7
CSS0047428 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 8.9e-08 60.8 107 32.7
CANSAT21G1843 Cannabis sativa HOM05D000002 ORTHO05D001134 8.9e-08 60.8 101 34.7
CiPaw.10G127600 Carya illinoinensis HOM05D000002 ORTHO05D001134 8.9e-08 60.8 100 33.0
ECA246G2881 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.9e-08 60.8 99 31.3
ECA248G3467 Erigeron canadensis HOM05D000002 ORTHO05D001134 8.9e-08 60.8 99 32.3
CSS0004348 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 1.2e-07 60.5 107 32.7
CANSAT01G3173 Cannabis sativa HOM05D000002 ORTHO05D001134 1.2e-07 60.5 118 29.7
CANSAT56G1418 Cannabis sativa HOM05D000002 ORTHO05D001134 1.2e-07 60.5 106 32.1
Cpa.g.sc4.185 Carica papaya HOM05D000002 ORTHO05D001134 1.2e-07 60.5 109 33.9
AUR62029287 Chenopodium quinoa HOM05D000893 ORTHO05D001134 1.2e-07 60.5 134 29.1
ECA240G0039 Erigeron canadensis HOM05D000002 ORTHO05D001134 1.2e-07 60.5 99 32.3
Sabra04G0008500 Salix brachista HOM05D000002 ORTHO05D001134 1.2e-07 60.5 130 30.8
CSS0048219 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 1.5e-07 60.1 107 32.7
ECA246G4071 Erigeron canadensis HOM05D000002 ORTHO05D001134 1.5e-07 60.1 99 32.3
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-07 59.7 99 32.3
FvH4_4g00961 Fragaria vesca HOM05D000002 ORTHO05D001134 2.0e-07 59.7 105 35.2
HanXRQChr13g0409601 Helianthus annuus HOM05D000002 ORTHO05D001134 2.0e-07 59.7 99 34.3
HanXRQChr15g0477091 Helianthus annuus HOM05D000002 ORTHO05D001134 2.6e-07 59.3 99 34.3
PSO210G0743 Papaver somniferum HOM05D000002 ORTHO05D001134 2.6e-07 59.3 113 29.2
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.4e-07 58.9 112 28.6
PSO339G1018 Papaver somniferum HOM05D000002 ORTHO05D001134 3.4e-07 58.9 114 28.1
CSS0028775 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.4e-07 58.5 109 32.1
CANSAT01G2684 Cannabis sativa HOM05D000002 ORTHO05D001134 4.4e-07 58.5 102 31.4
CiPaw.11G084200 Carya illinoinensis HOM05D000124 ORTHO05D001134 4.4e-07 58.5 100 32.0
GSVIVG01014104001 Vitis vinifera HOM05D000043 ORTHO05D000223 4.4e-07 58.5 109 25.7
FvH4_3g13432 Fragaria vesca HOM05D000002 ORTHO05D000001 5.8e-07 58.2 105 30.5
RcHm_v2.0_Chr2g0117391 Rosa chinensis HOM05D000002 ORTHO05D001134 5.8e-07 58.2 43 69.8
Atru.chr11.404 Acer truncatum HOM05D000002 ORTHO05D001134 7.5e-07 57.8 107 30.8
CANSAT64G0883 Cannabis sativa HOM05D000002 ORTHO05D001134 7.5e-07 57.8 92 31.5
ECA233G4495 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.5e-07 57.8 99 31.3
Psat0s3596g0040 Pisum sativum HOM05D000002 ORTHO05D001134 7.5e-07 57.8 103 32.0
Rhsim01G0099200 Rhododendron simsii HOM05D000002 ORTHO05D001134 7.5e-07 57.8 104 34.6
PSO478G2248 Papaver somniferum HOM05D000002 ORTHO05D001134 9.8e-07 57.4 109 28.4
RcHm_v2.0_Chr1g0335001 Rosa chinensis HOM05D000002 ORTHO05D001134 9.8e-07 57.4 43 69.8
CSS0004936 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.3e-06 57.0 104 32.7
CANSAT25G2057 Cannabis sativa HOM05D000002 ORTHO05D001134 1.3e-06 57.0 114 33.3
FvH4_3g30611 Fragaria vesca HOM05D000002 ORTHO05D001134 1.3e-06 57.0 105 30.5
THA.LOC104823254 Tarenaya hassleriana HOM05D000002 ORTHO05D001134 1.3e-06 57.0 99 32.3
CANSAT54G2894 Cannabis sativa HOM05D000002 ORTHO05D001134 1.7e-06 56.6 100 34.0
CANSAT56G3404 Cannabis sativa HOM05D000002 ORTHO05D001134 1.7e-06 56.6 104 33.7
CANSAT80G1091 Cannabis sativa HOM05D000002 ORTHO05D001134 1.7e-06 56.6 92 31.5
RcHm_v2.0_Chr5g0045101 Rosa chinensis HOM05D000002 ORTHO05D001134 1.7e-06 56.6 70 42.9
CSS0016992 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D001134 2.2e-06 56.2 96 33.3
PSO339G1161 Papaver somniferum HOM05D000002 ORTHO05D001134 2.2e-06 56.2 103 30.1
CANSAT54G1705 Cannabis sativa HOM05D000009 ORTHO05D001134 2.9e-06 55.8 91 30.8
FvH4_7g00731 Fragaria vesca HOM05D000002 ORTHO05D001134 2.9e-06 55.8 47 57.4
TWI39G0705 Tripterygium wilfordii HOM05D000002 ORTHO05D001134 2.9e-06 55.8 116 26.7
CANSAT01G2557 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.5 93 31.2
CANSAT64G0791 Cannabis sativa HOM05D000002 ORTHO05D001134 3.7e-06 55.5 89 31.5
CAN.G1580.3 Capsicum annuum HOM05D000002 ORTHO05D001134 3.7e-06 55.5 107 29.9
ECA246G4054 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.7e-06 55.5 76 34.2
FvH4_1g12751 Fragaria vesca HOM05D000002 ORTHO05D001134 3.7e-06 55.5 105 32.4
Prupe.4G244000 Prunus persica HOM05D000002 ORTHO05D001134 3.7e-06 55.5 76 39.5
Sopen10g025130 Solanum pennellii HOM05D000002 ORTHO05D001134 3.7e-06 55.5 106 26.4
THA.LOC104803468 Tarenaya hassleriana HOM05D000002 ORTHO05D001134 3.7e-06 55.5 96 31.2
ECA233G0481 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-06 55.1 76 34.2
ECA233G0623 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-06 55.1 76 34.2
ECA233G4438 Erigeron canadensis HOM05D000002 ORTHO05D001134 4.9e-06 55.1 78 34.6
FvH4_1g16303 Fragaria vesca HOM05D000002 ORTHO05D001134 4.9e-06 55.1 43 67.4
Rhsim03G0077200 Rhododendron simsii HOM05D000002 ORTHO05D001134 4.9e-06 55.1 104 30.8
THA.LOC104825812 Tarenaya hassleriana HOM05D000002 ORTHO05D001134 4.9e-06 55.1 102 25.5
CANSAT01G0351 Cannabis sativa HOM05D000002 ORTHO05D001134 6.4e-06 54.7 79 36.7
AUR62026226 Chenopodium quinoa HOM05D000002 ORTHO05D001134 6.4e-06 54.7 109 22.9
ECA232G4055 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.4e-06 54.7 76 34.2
ECA233G0511 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.4e-06 54.7 76 34.2
ECA236G0974 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.4e-06 54.7 76 34.2
ECA240G2188 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.4e-06 54.7 76 34.2
Hma1.2p1_0316F.1_g123000 Hydrangea macrophylla HOM05D000002 ORTHO05D001134 6.4e-06 54.7 77 40.3
EL10Ac5g11829 Beta vulgaris HOM05D010653 ORTHO05D013151 8.3e-06 54.3 98 30.6
ECA233G2911 Erigeron canadensis HOM05D000002 ORTHO05D001134 8.3e-06 54.3 76 34.2
THA.LOC104818495 Tarenaya hassleriana HOM05D000002 ORTHO05D001134 8.3e-06 54.3 78 33.3


User provided reference genes

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