Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0267731 Rosa chinensis HOM05D003293 ORTHO05D013446 9.9e-77 290.0 146 100.0
RcHm_v2.0_Chr5g0022661 Rosa chinensis HOM05D003293 ORTHO05D013446 1.4e-62 243.0 123 98.4
RcHm_v2.0_Chr2g0110561 Rosa chinensis HOM05D003293 ORTHO05D013446 4.0e-62 241.5 123 97.6
RcHm_v2.0_Chr4g0408151 Rosa chinensis HOM05D003293 ORTHO05D013446 5.5e-51 204.5 101 99.0
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 1.9e-48 196.1 177 62.7
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 1.8e-46 189.5 183 60.1
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 3.4e-45 185.3 203 54.2
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.0e-41 173.7 203 50.2
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 1.3e-39 166.8 203 48.3
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.3e-39 166.8 203 48.3
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.3e-39 166.8 203 48.3
RcHm_v2.0_Chr3g0468611 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-39 166.8 166 59.0
RcHm_v2.0_Chr1g0350061 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-39 166.4 159 59.1
RcHm_v2.0_Chr2g0101951 Rosa chinensis HOM05D003293 ORTHO05D013446 1.6e-39 166.4 159 59.1
RcHm_v2.0_Chr2g0155871 Rosa chinensis HOM05D003293 ORTHO05D013446 2.8e-39 165.6 185 53.0
RcHm_v2.0_Chr4g0401281 Rosa chinensis HOM05D003293 ORTHO05D013446 6.3e-39 164.5 185 53.0
RcHm_v2.0_Chr7g0231801 Rosa chinensis HOM05D003293 ORTHO05D013446 1.4e-38 163.3 185 52.4
RcHm_v2.0_Chr7g0234111 Rosa chinensis HOM05D003293 ORTHO05D013446 1.8e-38 162.9 159 58.5
RcHm_v2.0_Chr7g0238791 Rosa chinensis HOM05D003293 ORTHO05D013446 6.9e-38 161.0 159 57.9
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 7.7e-37 157.5 203 46.8
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 1.3e-36 156.8 203 46.3
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 3.8e-36 155.2 203 45.8
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 2.5e-35 152.5 203 45.8
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.1e-32 143.7 203 44.3
RcHm_v2.0_Chr7g0239601 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-28 130.2 101 68.3
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 1.4e-27 126.7 74 87.8
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 1.4e-27 126.7 199 39.7
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 5.5e-27 124.8 204 39.7
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.2e-26 123.6 102 62.7
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 1.2e-26 123.6 102 62.7
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.6e-26 123.2 80 77.5
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.6e-26 123.2 199 38.7
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 2.1e-26 122.9 80 77.5
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 7.9e-26 120.9 80 76.2
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.0e-25 120.6 80 76.2
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 1.4e-25 120.2 204 36.8
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 1.4e-25 120.2 80 76.2
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.8e-25 119.8 80 73.8
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 2.3e-25 119.4 80 75.0
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 3.0e-25 119.0 204 38.2
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 3.9e-25 118.6 74 81.1
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 3.9e-25 118.6 80 72.5
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 3.9e-25 118.6 80 72.5
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 3.9e-25 118.6 71 84.5
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 3.9e-25 118.6 80 75.0
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 5.1e-25 118.2 109 56.9
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 5.1e-25 118.2 74 79.7
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 6.7e-25 117.9 74 79.7
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 6.7e-25 117.9 80 72.5
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 6.7e-25 117.9 80 72.5
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 6.7e-25 117.9 74 79.7
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 6.7e-25 117.9 200 39.0
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 6.7e-25 117.9 199 37.7
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 6.7e-25 117.9 199 37.7
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 6.7e-25 117.9 207 37.7
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 6.7e-25 117.9 80 71.2
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 8.8e-25 117.5 109 56.9
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 8.8e-25 117.5 80 72.5
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 8.8e-25 117.5 80 71.2
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 8.8e-25 117.5 80 71.2
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 8.8e-25 117.5 80 71.2
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-24 117.1 80 73.8
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-24 117.1 80 73.8
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-24 117.1 80 73.8
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 1.1e-24 117.1 80 73.8
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.1e-24 117.1 80 71.2
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.1e-24 117.1 80 71.2
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.5e-24 116.7 74 79.7
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.5e-24 116.7 204 37.7
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 2.0e-24 116.3 80 72.5
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.0e-24 116.3 80 72.5
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.0e-24 116.3 80 72.5
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.0e-24 116.3 80 72.5
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 2.0e-24 116.3 80 72.5
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 2.0e-24 116.3 80 72.5
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 2.0e-24 116.3 80 72.5
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 2.6e-24 115.9 80 71.2
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 2.6e-24 115.9 80 72.5
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 2.6e-24 115.9 80 72.5
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 2.6e-24 115.9 80 72.5
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 2.6e-24 115.9 80 72.5
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 2.6e-24 115.9 80 72.5
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 2.6e-24 115.9 207 37.7
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.6e-24 115.9 74 78.4
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 2.6e-24 115.9 80 71.2
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 3.3e-24 115.5 80 70.0
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 3.3e-24 115.5 80 71.2
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 4.4e-24 115.2 80 71.2
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 4.4e-24 115.2 74 75.7
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 4.4e-24 115.2 207 36.7
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 5.7e-24 114.8 74 78.4
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 5.7e-24 114.8 80 71.2
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 5.7e-24 114.8 80 70.0
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 5.7e-24 114.8 80 70.0
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 5.7e-24 114.8 80 71.2
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 5.7e-24 114.8 80 70.0
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 5.7e-24 114.8 80 70.0
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 7.4e-24 114.4 203 37.9
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 7.4e-24 114.4 207 37.2
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 7.4e-24 114.4 207 37.2
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 7.4e-24 114.4 80 70.0
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 7.4e-24 114.4 80 71.2
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 9.7e-24 114.0 80 71.2
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 9.7e-24 114.0 80 70.0
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 9.7e-24 114.0 71 81.7
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 9.7e-24 114.0 80 70.0
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 9.7e-24 114.0 80 70.0
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 9.7e-24 114.0 80 70.0
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 1.3e-23 113.6 80 71.2
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 1.3e-23 113.6 80 70.0
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 1.3e-23 113.6 74 75.7
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 1.7e-23 113.2 207 36.7
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 1.7e-23 113.2 80 70.0
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.7e-23 113.2 80 71.2
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.7e-23 113.2 80 71.2
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 2.2e-23 112.8 80 70.0
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 2.2e-23 112.8 80 68.8
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 2.2e-23 112.8 74 75.7
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 2.2e-23 112.8 80 68.8
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 3.7e-23 112.1 74 75.7
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 3.7e-23 112.1 74 75.7
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 3.7e-23 112.1 74 75.7
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 4.8e-23 111.7 80 68.8
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 4.8e-23 111.7 80 68.8
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 4.8e-23 111.7 80 68.8
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 4.8e-23 111.7 80 68.8
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 6.3e-23 111.3 74 74.3
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 6.3e-23 111.3 74 74.3
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 6.3e-23 111.3 74 74.3
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 6.3e-23 111.3 74 74.3
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 6.3e-23 111.3 80 70.0
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 8.2e-23 110.9 80 70.0
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.1e-22 110.5 71 76.1
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 1.1e-22 110.5 71 76.1
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 1.4e-22 110.2 74 75.7
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 1.4e-22 110.2 80 65.0
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.8e-22 109.8 72 75.0
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 1.8e-22 109.8 80 67.5
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 1.8e-22 109.8 74 73.0
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 4.1e-22 108.6 80 67.5
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 7.0e-22 107.8 71 73.2
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 1.5e-21 106.7 72 73.6
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 1.5e-21 106.7 80 67.5
arahy.Tifrunner.gnm1.ann1.K3F60Q Arachis hypogaea HOM05D003293 ORTHO05D005060 1.5e-21 106.7 80 68.8
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 1.5e-21 106.7 72 73.6
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 1.5e-21 106.7 71 73.2
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 2.6e-21 105.9 102 54.9
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 2.6e-21 105.9 71 71.8
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 3.4e-21 105.5 75 70.7
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 4.5e-21 105.1 72 72.2
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 4.5e-21 105.1 72 72.2
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 5.9e-21 104.8 72 72.2
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 7.7e-21 104.4 72 70.8
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 1.0e-20 104.0 81 64.2
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 1.0e-20 104.0 81 64.2
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 1.3e-20 103.6 81 64.2
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 1.3e-20 103.6 81 64.2
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 2.2e-20 102.8 73 68.5
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 2.2e-20 102.8 71 67.6
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.9e-20 102.4 72 70.8
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 3.8e-20 102.1 95 58.9
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 1.1e-19 100.5 80 62.5
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 1.4e-19 100.1 72 70.8
Rhsim01G0232100 Rhododendron simsii HOM05D003293 ORTHO05D013446 3.2e-19 99.0 115 49.6
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 5.5e-19 98.2 71 67.6
Actinidia12755 Actinidia chinensis HOM05D003293 ORTHO05D005060 4.7e-18 95.1 75 68.0
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 8.0e-18 94.4 80 63.8
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 2.6e-16 89.4 122 45.9
Cpa.g.c31787.1 Carica papaya HOM05D003293 ORTHO05D005060 1.7e-15 86.7 56 75.0
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 3.7e-15 85.5 79 57.0
PSO675G5548 Papaver somniferum HOM05D003293 ORTHO05D005060 4.2e-11 72.0 54 61.1
Aqoxy7G02401 Aquilegia oxysepala HOM05D003293 ORTHO05D013446 2.7e-10 69.3 48 66.7
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 8.0e-10 67.8 74 52.7
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.4e-09 67.0 138 36.2
Haze_27383 Corylus avellana HOM05D003293 ORTHO05D044783 1.2e-08 63.9 72 45.8


User provided reference genes

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