Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 2.5e-107 392.1 199 100.0
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 1.7e-92 342.8 198 84.8
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.6e-91 337.0 198 83.3
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.3e-90 336.7 205 82.0
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 9.9e-88 327.0 226 73.9
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 8.2e-74 280.8 196 76.5
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 1.8e-73 279.6 206 72.3
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 4.5e-64 248.4 196 68.9
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 2.3e-60 236.1 198 63.1
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.6e-59 232.6 169 68.0
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 7.4e-59 231.1 169 67.5
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 5.3e-57 224.9 196 59.7
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 9.1e-57 224.2 198 62.6
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.0e-56 223.0 192 61.5
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 3.4e-56 222.2 183 63.9
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 3.4e-56 222.2 171 65.5
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 7.7e-56 221.1 174 63.8
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.0e-55 220.7 172 63.4
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.3e-55 220.3 176 61.4
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 5.0e-55 218.4 168 66.1
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 8.5e-55 217.6 195 61.0
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.4e-54 216.9 180 62.2
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.4e-54 216.9 180 62.2
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 4.2e-54 215.3 171 60.8
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 5.5e-54 214.9 190 60.5
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 5.5e-54 214.9 174 62.1
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 9.4e-54 214.2 175 61.1
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.6e-53 213.4 170 63.5
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.6e-53 213.4 211 59.2
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 4.7e-53 211.8 169 64.5
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 4.7e-53 211.8 172 62.8
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 5.2e-52 208.4 171 60.2
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 6.7e-52 208.0 177 61.0
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 6.7e-52 208.0 195 55.9
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.0e-51 206.5 168 60.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 5.7e-51 204.9 216 50.9
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 1.7e-50 203.4 165 61.8
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 4.8e-50 201.8 194 57.2
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.1e-49 200.7 170 58.2
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 1.2e-48 197.2 193 55.4
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 2.6e-48 196.1 177 53.7
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 7.7e-48 194.5 170 56.5
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.3e-47 193.7 182 57.7
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.9e-47 192.6 175 60.0
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 2.9e-47 192.6 174 58.0
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 6.5e-47 191.4 175 56.0
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 8.5e-47 191.0 168 56.5
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.1e-46 190.7 180 54.4
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.9e-46 189.9 172 55.8
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 5.5e-46 188.3 173 55.5
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 2.1e-45 186.4 172 54.7
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 2.7e-45 186.0 170 54.1
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 2.7e-45 186.0 174 52.3
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 8.0e-45 184.5 182 51.6
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 5.2e-44 181.8 165 53.9
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 8.8e-44 181.0 202 48.5
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 2.0e-43 179.9 170 52.9
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 2.0e-43 179.9 196 48.0
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 2.6e-43 179.5 174 50.6
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 4.4e-43 178.7 200 48.0
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 5.7e-43 178.3 174 53.4
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 9.7e-43 177.6 170 52.4
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.3e-42 177.2 173 51.4
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.7e-42 176.8 200 47.5
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.7e-42 176.8 175 54.9
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 2.2e-42 176.4 177 52.0
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.8e-42 176.0 170 56.5
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 2.8e-42 176.0 170 53.5
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 8.2e-42 174.5 174 51.7
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 8.2e-42 174.5 175 54.9
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.1e-41 174.1 177 51.4
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.1e-41 174.1 175 54.3
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.1e-41 174.1 177 53.1
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.8e-41 173.3 178 53.9
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 2.4e-41 172.9 203 48.8
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.1e-41 172.2 167 54.5
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 5.3e-41 171.8 195 43.6
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.2e-40 170.6 181 52.5
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.2e-40 170.6 183 51.4
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.2e-40 170.6 172 52.3
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.2e-40 170.6 169 47.3
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.6e-40 170.2 184 52.2
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.6e-40 170.2 201 49.3
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 2.7e-40 169.5 184 51.6
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 4.5e-40 168.7 181 50.3
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 4.5e-40 168.7 181 50.3
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.5e-40 168.7 155 56.8
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 5.9e-40 168.3 189 50.3
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 1.0e-39 167.5 181 49.7
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.0e-39 167.5 181 49.7
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.0e-39 167.5 181 49.7
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.7e-39 166.8 179 46.4
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 3.8e-39 165.6 177 50.3
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 3.8e-39 165.6 182 51.6
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 8.5e-39 164.5 163 49.7
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 1.5e-38 163.7 205 46.8
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.9e-38 163.3 181 49.7
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 4.2e-38 162.2 185 50.3
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 5.5e-38 161.8 198 46.5
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.6e-37 160.2 136 59.6
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.6e-37 160.2 170 48.2
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 6.8e-36 154.8 280 37.5
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 1.2e-35 154.1 173 49.7
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.6e-35 152.9 178 47.8
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 3.4e-35 152.5 154 56.5
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 4.8e-34 148.7 223 43.9
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 6.3e-34 148.3 225 41.8
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.1e-33 147.5 162 47.5
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 9.1e-33 144.4 160 49.4
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 1.6e-32 143.7 136 52.9
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 2.0e-32 143.3 195 46.2
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 7.7e-32 141.4 138 52.2
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 5.0e-31 138.7 130 55.4
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 5.5e-30 135.2 96 68.8
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 5.5e-30 135.2 147 46.9
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 7.2e-30 134.8 110 60.0
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 4.7e-29 132.1 172 41.3
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 6.1e-29 131.7 168 45.2
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.3e-28 129.8 127 55.9
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 2.3e-28 129.8 199 36.7
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 6.8e-28 128.3 174 47.1
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 2.0e-27 126.7 201 37.8
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 5.7e-27 125.2 101 58.4
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 5.7e-27 125.2 145 47.6
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.7e-26 123.6 174 44.8
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 6.3e-26 121.7 92 60.9
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.1e-25 120.9 197 38.6
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 2.4e-25 119.8 187 38.5
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 7.0e-25 118.2 195 37.9
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.5e-24 115.9 190 37.4
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.5e-22 110.5 186 32.8
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.9e-22 110.2 101 54.5
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.3e-22 109.4 170 41.2
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.3e-22 109.0 177 39.5
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.6e-21 107.1 177 39.0
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.6e-21 107.1 169 36.1
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 3.6e-21 105.9 176 38.1
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.7e-21 105.5 177 38.4
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 1.0e-20 104.4 133 44.4
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 4.0e-20 102.4 183 33.9
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 8.9e-20 101.3 97 50.5
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 3.4e-19 99.4 178 36.0
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 4.4e-19 99.0 141 42.6
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.7e-19 98.6 79 62.0
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 1.3e-18 97.4 129 41.9
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 6.4e-18 95.1 130 38.5
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 3.9e-15 85.9 114 41.2
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.9e-15 85.9 93 47.3
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 8.0e-13 78.2 112 40.2
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 2.9e-10 69.7 56 55.4
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.7e-10 69.3 49 67.3
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 8.3e-10 68.2 129 35.7


User provided reference genes

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