Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 8.3e-25 116.3 62 100.0
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 7.0e-24 113.2 62 98.4
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.3e-21 104.4 62 90.3
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 5.6e-21 103.6 62 90.3
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 5.6e-21 103.6 62 90.3
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 7.3e-21 103.2 62 88.7
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.2e-20 102.4 61 90.2
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 1.2e-20 102.4 61 90.2
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 4.7e-20 100.5 62 87.1
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 4.7e-20 100.5 60 90.0
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 6.2e-20 100.1 61 86.9
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.0e-19 99.4 60 88.3
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.0e-19 99.4 60 88.3
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.0e-19 99.4 60 88.3
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.4e-19 99.0 62 83.9
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.4e-19 99.0 60 88.3
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.4e-19 99.0 62 83.9
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.8e-19 98.6 60 85.0
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 1.8e-19 98.6 62 83.9
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.8e-19 98.6 60 85.0
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.3e-19 98.2 60 86.7
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 2.3e-19 98.2 62 82.3
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 2.3e-19 98.2 60 86.7
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 2.3e-19 98.2 59 89.8
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 3.1e-19 97.8 62 83.9
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 4.0e-19 97.4 60 85.0
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 4.0e-19 97.4 60 83.3
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 4.0e-19 97.4 60 85.0
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 4.0e-19 97.4 60 83.3
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 4.0e-19 97.4 62 83.9
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.0e-19 97.4 62 83.9
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.0e-19 97.4 62 83.9
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.0e-19 97.4 62 83.9
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 4.0e-19 97.4 59 89.8
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.0e-19 97.4 59 86.4
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 5.2e-19 97.1 60 86.7
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 5.2e-19 97.1 60 83.3
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 5.2e-19 97.1 60 88.3
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 5.2e-19 97.1 60 83.3
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.2e-19 97.1 60 86.7
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 5.2e-19 97.1 60 85.0
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 5.2e-19 97.1 62 82.3
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 5.2e-19 97.1 59 84.7
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 6.8e-19 96.7 60 85.0
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 6.8e-19 96.7 60 86.7
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 6.8e-19 96.7 60 85.0
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 8.9e-19 96.3 61 85.2
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 80.0
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 80.0
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 80.0
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 80.0
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 80.0
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 80.0
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 81.7
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 8.9e-19 96.3 59 84.7
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 83.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 8.9e-19 96.3 60 80.0
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 8.9e-19 96.3 62 80.6
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.2e-18 95.9 60 85.0
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 1.2e-18 95.9 60 85.0
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.2e-18 95.9 60 81.7
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.0e-18 95.1 59 84.7
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 2.0e-18 95.1 59 84.7
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.0e-18 95.1 59 84.7
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 2.0e-18 95.1 59 84.7
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 2.0e-18 95.1 61 78.7
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 2.6e-18 94.7 60 78.3
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.6e-18 94.7 60 78.3
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 2.6e-18 94.7 60 78.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 2.6e-18 94.7 61 78.7
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 2.6e-18 94.7 60 81.7
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 2.6e-18 94.7 60 78.3
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 2.6e-18 94.7 60 80.0
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.4e-18 94.4 60 78.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 3.4e-18 94.4 61 78.7
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 3.4e-18 94.4 59 84.7
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 4.4e-18 94.0 62 80.6
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.4e-18 94.0 60 78.3
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 4.4e-18 94.0 62 80.6
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 5.8e-18 93.6 59 84.7
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 5.8e-18 93.6 59 83.1
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 5.8e-18 93.6 60 81.7
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 7.5e-18 93.2 60 83.3
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 7.5e-18 93.2 60 78.3
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 7.5e-18 93.2 62 77.4
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 9.8e-18 92.8 59 78.0
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 9.8e-18 92.8 59 81.4
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 9.8e-18 92.8 60 81.7
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.3e-17 92.4 60 76.7
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 1.3e-17 92.4 60 76.7
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.3e-17 92.4 59 81.4
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.7e-17 92.0 61 77.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 2.2e-17 91.7 60 80.0
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 2.2e-17 91.7 60 76.7
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.2e-17 91.7 59 81.4
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 2.2e-17 91.7 59 79.7
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 2.2e-17 91.7 59 83.1
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 2.2e-17 91.7 60 80.0
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.9e-17 91.3 59 81.4
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.7e-17 90.9 59 81.4
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 4.9e-17 90.5 62 77.4
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 4.9e-17 90.5 61 83.6
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 6.4e-17 90.1 59 81.4
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 6.4e-17 90.1 61 82.0
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 8.3e-17 89.7 60 78.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 8.3e-17 89.7 60 78.3
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 8.3e-17 89.7 60 78.3
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 8.3e-17 89.7 60 78.3
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 9.2e-16 86.3 54 85.2
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.6e-15 85.5 54 85.2
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.0e-15 85.1 56 76.8
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.7e-15 84.7 59 74.6
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 4.6e-15 84.0 60 75.0
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 6.0e-15 83.6 60 71.7
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 7.8e-15 83.2 55 81.8
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.9e-14 80.9 59 72.9
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 5.0e-14 80.5 54 77.8
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.5e-13 79.0 59 72.9
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 3.3e-13 77.8 60 66.7
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 4.3e-13 77.4 60 66.7
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 4.7e-12 73.9 44 88.6
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 2.3e-11 71.6 54 66.7
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 4.0e-11 70.9 53 67.9
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 8.9e-11 69.7 57 63.2
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.7e-09 65.5 44 72.7
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.7e-09 65.5 62 59.7
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 2.9e-09 64.7 63 60.3
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 1.9e-08 62.0 37 89.2
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 2.4e-08 61.6 46 65.2
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 7.1e-08 60.1 46 65.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 9.2e-08 59.7 52 61.5


User provided reference genes

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