Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.7e-271 938.7 469 100.0
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 3.5e-240 834.7 465 91.4
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 4.0e-220 768.1 466 81.1
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 1.7e-215 752.7 465 78.5
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 2.4e-209 732.3 456 76.8
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 2.9e-202 708.8 460 76.3
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.2e-200 703.4 467 73.0
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.2e-200 703.4 467 73.4
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 1.7e-199 699.5 467 72.8
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 2.3e-199 699.1 463 73.4
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 3.0e-199 698.7 467 72.6
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 5.6e-198 694.5 352 97.7
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.8e-196 689.5 454 75.1
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 4.4e-195 684.9 465 71.8
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 1.2e-192 676.8 467 70.0
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 7.8e-192 674.1 468 69.7
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.3e-191 673.3 467 68.7
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.0e-191 672.2 462 70.1
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.5e-190 669.8 467 71.1
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 2.5e-190 669.1 465 69.7
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 3.6e-189 665.2 459 71.2
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.6e-187 659.1 467 67.9
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 7.6e-187 657.5 454 69.6
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 7.6e-187 657.5 454 69.6
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 8.4e-186 654.1 464 67.0
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 3.5e-184 648.7 464 66.2
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 3.9e-183 645.2 467 68.1
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.6e-181 639.8 467 67.0
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.1e-180 637.1 454 67.2
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 6.9e-180 634.4 465 68.0
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 2.9e-178 629.0 458 64.0
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 3.8e-178 628.6 458 65.1
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 4.9e-178 628.2 466 66.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.4e-177 626.7 470 66.0
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 2.4e-177 625.9 465 66.5
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 2.1e-176 622.9 456 66.4
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 2.1e-176 622.9 462 67.3
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.1e-176 622.9 458 63.3
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 6.0e-176 621.3 467 65.7
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 7.8e-176 620.9 462 64.9
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 4.8e-173 611.7 458 64.0
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 6.2e-173 611.3 459 63.0
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 8.1e-173 610.9 467 63.0
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.4e-172 610.1 458 63.8
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 2.4e-172 609.4 469 64.0
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 3.4e-171 605.5 467 64.7
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 4.5e-171 605.1 458 61.8
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.3e-170 603.6 458 64.6
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 1.3e-170 603.6 464 63.6
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 1.3e-170 603.6 467 63.2
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 2.2e-170 602.8 465 61.1
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 2.2e-170 602.8 458 61.4
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 4.9e-170 601.7 458 61.6
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 1.1e-169 600.5 464 63.4
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 3.9e-167 592.0 458 61.6
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.1e-166 590.5 461 61.6
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 9.6e-166 587.4 458 59.2
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.8e-164 583.2 464 59.7
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 2.4e-164 582.8 468 60.9
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.2e-163 580.5 459 61.2
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 2.6e-163 579.3 468 60.0
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 2.6e-163 579.3 384 73.2
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.4e-163 578.9 466 61.8
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 4.5e-163 578.6 468 61.5
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 2.9e-162 575.9 468 61.1
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.3e-159 566.2 467 60.2
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.3e-157 560.5 462 60.8
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.0e-154 550.8 450 60.2
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.2e-154 549.7 460 57.4
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 3.8e-154 548.9 462 58.2
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.5e-153 546.2 455 56.9
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 4.6e-152 542.0 459 58.4
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 6.0e-152 541.6 468 58.5
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 5.1e-151 538.5 470 57.4
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.3e-149 533.9 450 58.2
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.6e-149 533.5 460 57.8
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.8e-149 532.7 450 58.0
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 8.2e-149 531.2 461 58.1
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.4e-148 529.6 450 58.9
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.4e-148 529.6 456 56.8
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 5.9e-147 525.0 455 56.9
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 5.9e-147 525.0 450 58.2
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 3.2e-145 519.2 456 57.0
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 6.7e-143 511.5 457 53.2
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 1.1e-142 510.8 454 54.8
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 4.1e-140 502.3 474 54.2
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 6.9e-140 501.5 459 56.9
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 2.0e-139 500.0 341 69.5
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 9.1e-132 474.6 348 65.2
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 2.9e-130 469.5 355 62.5
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 4.2e-129 465.7 462 53.2
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 4.2e-129 465.7 462 53.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 8.0e-128 461.5 467 51.6
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 9.1e-124 448.0 466 52.4
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 1.6e-123 447.2 361 60.7
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 3.8e-122 442.6 459 47.7
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.1e-116 424.5 447 48.8
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 3.1e-116 422.9 373 58.4
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 9.1e-116 421.4 455 47.7
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 3.8e-114 416.0 455 46.4
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 3.0e-111 406.4 303 64.4
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 1.3e-106 391.0 455 46.8
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.3e-106 391.0 276 67.0
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 2.5e-105 386.7 469 42.6
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 3.0e-103 379.8 363 55.4
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 5.0e-98 362.5 452 45.1
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 8.6e-98 361.7 411 44.3
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 8.3e-93 345.1 367 49.9
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.0e-83 312.4 258 60.1
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 3.2e-76 290.0 317 47.9
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.2e-75 288.1 194 71.1
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.1e-71 275.0 262 52.7
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 5.8e-70 269.2 180 76.1
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 3.0e-66 256.9 462 37.7
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 6.6e-66 255.8 196 67.3
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 8.7e-66 255.4 168 70.8
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 8.1e-64 248.8 208 57.2
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 5.8e-62 242.7 179 67.0
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 9.3e-52 208.8 128 79.7
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 4.6e-43 179.9 124 66.9
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.9e-41 174.5 200 48.5
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 5.3e-23 113.2 146 39.7
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.5e-20 104.4 75 61.3
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.2e-16 91.3 76 55.3
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 7.7e-14 82.8 79 51.9
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.8e-10 71.6 62 58.1
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.3e-08 65.5 42 59.5
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 5.9e-06 56.6 122 36.1


User provided reference genes

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