Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 8.5e-290 999.6 489 100.0
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 3.9e-271 937.6 489 93.7
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.1e-270 936.0 489 93.9
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.1e-270 936.0 489 94.1
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 7.8e-243 843.6 499 86.8
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 1.2e-235 819.7 506 83.0
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 4.6e-219 764.6 487 78.9
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 1.9e-217 759.2 383 96.9
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 4.7e-216 754.6 498 75.5
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 9.9e-214 746.9 455 81.5
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 1.7e-213 746.1 504 75.2
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 3.8e-213 745.0 493 75.9
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 6.4e-213 744.2 428 83.6
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 1.0e-210 736.9 447 81.0
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 1.1e-209 733.4 461 78.3
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 2.5e-209 732.3 512 72.5
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 5.6e-209 731.1 438 81.5
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 7.3e-209 730.7 486 75.1
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 1.1e-207 726.9 488 74.2
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 2.4e-207 725.7 426 82.2
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 3.1e-207 725.3 477 75.9
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 9.0e-207 723.8 473 77.4
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 2.6e-206 722.2 436 81.2
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 4.4e-206 721.5 490 74.1
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 1.1e-204 716.8 480 75.0
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 7.1e-204 714.1 440 78.9
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 9.3e-204 713.8 449 77.7
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 2.7e-203 712.2 467 75.8
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 6.0e-203 711.1 426 79.8
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 6.0e-203 711.1 425 79.5
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 7.9e-203 710.7 425 79.5
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 1.3e-202 709.9 480 73.3
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 3.0e-202 708.8 422 80.1
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 5.1e-202 708.0 438 79.9
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 5.1e-202 708.0 421 81.9
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 6.6e-202 707.6 436 81.0
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 1.9e-201 706.1 450 77.8
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 7.3e-201 704.1 436 78.9
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 9.6e-201 703.7 422 80.1
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 2.8e-200 702.2 461 75.9
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 8.1e-200 700.7 439 77.7
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 5.8e-198 694.5 427 78.5
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 5.8e-198 694.5 419 80.7
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 7.6e-198 694.1 456 75.4
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 2.2e-197 692.6 422 78.7
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 2.9e-197 692.2 423 77.5
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 3.8e-197 691.8 421 79.6
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 6.4e-197 691.0 444 76.1
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 8.4e-197 690.6 458 73.8
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 1.9e-196 689.5 423 77.5
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 2.4e-196 689.1 423 77.5
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 2.4e-196 689.1 442 76.5
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 2.4e-196 689.1 458 73.6
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 2.4e-196 689.1 474 71.1
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 1.6e-195 686.4 423 77.1
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 2.1e-195 686.0 434 77.0
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 6.0e-195 684.5 429 76.9
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 1.3e-194 683.3 422 78.0
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 1.8e-194 682.9 421 78.1
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 1.5e-193 679.9 433 75.8
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 1.5e-193 679.9 446 74.2
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 1.5e-193 679.9 452 75.2
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 1.9e-193 679.5 468 72.6
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 1.3e-189 666.8 480 70.6
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 4.2e-188 661.8 436 76.4
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 1.3e-186 656.8 382 83.0
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 1.1e-185 653.7 379 83.6
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 1.5e-185 653.3 490 70.4
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 1.9e-185 652.9 382 82.2
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 3.3e-185 652.1 457 72.4
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 1.3e-181 640.2 423 74.9
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 4.6e-179 631.7 381 79.3
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 2.5e-177 625.9 382 79.3
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 4.3e-177 625.2 378 78.3
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 9.7e-177 624.0 437 73.5
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 2.8e-176 622.5 419 72.8
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 2.7e-171 605.9 335 87.2
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 1.8e-170 603.2 422 70.1
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 1.8e-170 603.2 415 72.0
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 6.3e-168 594.7 428 69.6
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 9.1e-167 590.9 360 78.9
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 2.5e-164 582.8 417 71.0
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 4.2e-164 582.0 430 68.4
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 3.9e-162 575.5 479 64.5
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 2.2e-157 559.7 349 76.8
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 5.0e-157 558.5 429 63.2
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 5.0e-157 558.5 408 68.4
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 1.4e-154 550.4 418 64.1
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 1.5e-148 530.4 361 72.9
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 1.5e-148 530.4 314 80.9
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 1.8e-135 486.9 426 59.9
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 3.3e-132 476.1 477 54.7
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 1.1e-116 424.5 468 48.5
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 2.2e-112 410.2 245 78.0
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 4.9e-104 382.5 246 73.6
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 1.2e-102 377.9 441 47.6
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 3.4e-97 359.8 316 61.4
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 1.3e-96 357.8 316 61.4
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 1.3e-93 347.8 226 79.6
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 1.8e-90 337.4 202 77.7
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 7.9e-86 322.0 262 59.9
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 1.8e-82 310.8 315 58.4
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 5.8e-73 279.3 211 68.2
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 7.1e-71 272.3 179 74.9
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 7.9e-62 242.3 452 38.7
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 5.3e-58 229.6 165 68.5
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 5.0e-40 169.9 141 63.8
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 6.1e-38 162.9 93 83.9
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 1.2e-30 138.7 89 76.4
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 1.6e-30 138.3 87 77.0
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 9.2e-18 95.9 58 75.9
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 2.9e-11 74.3 42 83.3
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 7.8e-09 66.2 49 65.3


User provided reference genes

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