Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 4.8e-191 671.0 342 100.0
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.1e-170 602.4 344 91.0
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.0e-160 569.3 396 78.8
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 4.6e-149 531.6 342 80.7
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 9.9e-136 487.3 311 79.4
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.3e-135 486.9 308 80.5
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.4e-134 483.4 346 75.1
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 7.8e-133 477.6 305 78.7
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.3e-132 476.9 317 78.5
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.7e-132 476.5 330 76.4
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.3e-132 476.1 305 79.7
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.5e-131 473.4 330 73.9
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.3e-131 471.1 344 75.3
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 3.6e-130 468.8 283 82.3
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.1e-129 467.2 328 74.1
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.4e-129 466.8 311 76.5
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.1e-129 465.7 345 74.2
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.0e-129 465.3 309 76.7
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 9.0e-129 464.2 346 74.3
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.2e-128 463.8 331 73.4
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 2.0e-128 463.0 282 81.6
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 3.4e-128 462.2 339 72.9
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.3e-127 460.3 318 72.3
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 2.2e-127 459.5 311 76.2
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.2e-127 459.5 318 72.6
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 8.4e-127 457.6 278 83.8
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 8.4e-127 457.6 325 72.9
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 4.2e-126 455.3 277 83.4
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 7.1e-126 454.5 339 70.8
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 7.8e-125 451.1 309 74.1
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.1e-123 447.2 329 71.4
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 3.3e-123 445.7 292 75.0
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.3e-122 443.7 294 75.9
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.6e-122 443.4 317 70.3
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 2.8e-122 442.6 288 76.4
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 6.2e-122 441.4 288 76.0
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.1e-121 440.7 333 67.9
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.8e-121 439.9 335 69.6
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 5.3e-121 438.3 285 75.1
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 9.0e-121 437.6 325 71.7
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.2e-120 437.2 307 73.9
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.5e-120 436.8 309 69.9
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.5e-120 436.8 306 71.2
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 3.4e-120 435.6 284 75.4
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 5.8e-120 434.9 281 77.9
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 2.9e-119 432.6 320 68.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 3.8e-119 432.2 298 73.5
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.4e-118 430.3 287 74.9
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 1.9e-118 429.9 284 73.2
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 3.2e-118 429.1 288 74.3
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 4.2e-118 428.7 281 76.2
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 1.2e-117 427.2 334 66.2
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 2.1e-117 426.4 343 63.8
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 2.1e-117 426.4 319 68.3
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 7.9e-117 424.5 275 76.4
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 1.8e-116 423.3 274 77.0
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 2.3e-116 422.9 295 70.5
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 2.3e-116 422.9 281 73.7
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 5.1e-116 421.8 281 73.0
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 9.6e-115 417.5 335 66.6
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.4e-113 413.7 368 63.6
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.1e-113 412.5 380 61.6
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 6.9e-113 411.4 277 76.5
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-112 410.6 324 66.4
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 2.6e-112 409.5 287 72.5
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 5.8e-112 408.3 323 66.3
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 1.7e-111 406.8 276 72.5
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 2.2e-111 406.4 283 71.7
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 2.9e-111 406.0 288 69.8
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 4.9e-111 405.2 284 71.5
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 9.3e-110 401.0 300 67.3
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.6e-109 400.2 325 66.2
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 1.3e-108 397.1 259 74.5
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 5.1e-108 395.2 318 67.3
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.3e-106 390.6 281 71.9
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 5.3e-105 385.2 277 71.5
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 2.0e-104 383.3 293 69.6
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.9e-103 379.4 252 74.6
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 2.5e-102 376.3 308 64.6
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.6e-101 373.6 251 73.7
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 3.5e-101 372.5 327 64.2
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 7.9e-101 371.3 306 68.0
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.3e-100 370.5 339 62.2
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 3.8e-95 352.4 363 56.5
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.5e-94 349.7 323 59.4
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 3.2e-94 349.4 279 65.9
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 4.6e-93 345.5 262 71.8
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.5e-91 339.7 275 66.5
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.3e-87 327.4 219 79.0
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.9e-86 323.6 282 62.4
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.8e-84 317.0 279 63.8
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 3.7e-82 309.3 346 48.8
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 4.8e-82 308.9 197 77.7
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 2.6e-80 303.1 264 58.0
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.2e-76 288.9 281 53.7
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 3.3e-75 286.2 198 70.7
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-73 281.2 275 53.5
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.3e-73 278.9 270 54.1
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 8.0e-69 265.0 270 52.6
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 2.6e-67 260.0 260 55.0
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.7e-66 257.3 165 78.8
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.6e-64 250.8 378 43.1
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.1e-61 240.4 257 52.9
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 8.0e-61 238.4 207 61.4
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.4e-59 232.6 174 67.2
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 8.0e-45 185.3 136 67.6
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.7e-42 176.4 114 78.9
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 2.4e-41 173.7 144 63.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 2.5e-38 163.7 186 51.6
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 4.4e-35 152.9 188 46.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.7e-34 151.0 185 48.1
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 5.4e-33 146.0 225 43.1
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 2.1e-32 144.1 241 35.3
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-32 143.3 212 42.5
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 4.6e-32 142.9 214 43.0
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.1e-28 131.7 104 65.4
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 2.6e-27 127.1 281 31.0
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 3.7e-26 123.2 211 40.8
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 3.7e-26 123.2 79 81.0
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 8.3e-26 122.1 137 52.6
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 2.4e-25 120.6 72 76.4
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.2e-24 118.2 69 85.5
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 2.7e-24 117.1 232 32.3
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 7.8e-24 115.5 82 69.5
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 3.0e-23 113.6 73 75.3
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 6.2e-21 105.9 87 62.1
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.1e-20 103.6 60 81.7
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-16 91.3 151 38.4
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 5.1e-15 86.3 64 67.2
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 4.3e-14 83.2 128 39.8
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 4.7e-13 79.7 64 62.5
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-12 78.6 81 51.9
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 5.3e-12 76.3 99 47.5
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 1.3e-10 71.6 57 64.9
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.4e-09 66.2 34 88.2
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 9.3e-09 65.5 34 88.2
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 2.7e-08 63.9 39 71.8


User provided reference genes

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