Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0266651 Rosa chinensis HOM05D001660 ORTHO05D006486 1.2e-22 109.0 55 100.0
RcHm_v2.0_Chr4g0402461 Rosa chinensis HOM05D001660 ORTHO05D006486 4.3e-17 90.5 48 93.8
Thecc.09G177800 Theobroma cacao HOM05D001660 ORTHO05D006486 2.8e-16 87.8 48 89.6
Ah.14g083850 Amaranthus hybridus HOM05D001660 ORTHO05D006486 3.7e-16 87.4 54 77.8
RcHm_v2.0_Chr6g0273661 Rosa chinensis HOM05D001660 ORTHO05D006486 3.7e-16 87.4 47 93.6
EL10Ac8g18284 Beta vulgaris HOM05D001660 ORTHO05D006486 4.8e-16 87.0 54 77.8
COL.COLO4_37698 Corchorus olitorius HOM05D001660 ORTHO05D006486 4.8e-16 87.0 48 89.6
GSVIVG01029217001 Vitis vinifera HOM05D001660 ORTHO05D006486 4.8e-16 87.0 54 79.6
Cfa013504 Carpinus fangiana HOM05D001660 ORTHO05D006486 8.2e-16 86.3 48 87.5
Haze_22096 Corylus avellana HOM05D001660 ORTHO05D006486 8.2e-16 86.3 48 87.5
AL8G33410 Arabidopsis lyrata HOM05D001660 ORTHO05D006486 1.1e-15 85.9 54 77.8
CiPaw.08G036300 Carya illinoinensis HOM05D001660 ORTHO05D006486 1.1e-15 85.9 48 85.4
Lsat_1_v5_gn_8_67640 Lactuca sativa HOM05D001660 ORTHO05D006486 1.1e-15 85.9 54 77.8
Nitab4.5_0000455g0030 Nicotiana tabacum HOM05D001660 ORTHO05D006486 1.1e-15 85.9 49 83.7
Nitab4.5_0000730g0110 Nicotiana tabacum HOM05D001660 ORTHO05D006486 1.1e-15 85.9 49 83.7
Nitab4.5_0004134g0020 Nicotiana tabacum HOM05D001660 ORTHO05D006486 1.1e-15 85.9 49 83.7
Solyc10g054280.2 Solanum lycopersicum HOM05D001660 ORTHO05D006486 1.4e-15 85.5 48 85.4
Sopen10g024180 Solanum pennellii HOM05D001660 ORTHO05D006486 1.4e-15 85.5 48 85.4
CAN.G2214.1 Capsicum annuum HOM05D001660 ORTHO05D006486 1.8e-15 85.1 48 85.4
CARHR271230 Cardamine hirsuta HOM05D001660 ORTHO05D006486 1.8e-15 85.1 54 75.9
FvH4_4g08210 Fragaria vesca HOM05D001660 ORTHO05D006486 1.8e-15 85.1 48 87.5
FAN12G1428 Fragaria x ananassa HOM05D001660 ORTHO05D006486 1.8e-15 85.1 48 87.5
Hund26348 Selenicereus undatus HOM05D001660 ORTHO05D006486 1.8e-15 85.1 54 75.9
BcaB08g36099 Brassica carinata HOM05D001660 ORTHO05D006486 2.4e-15 84.7 54 74.1
BcaC04g19967 Brassica carinata HOM05D001660 ORTHO05D006486 2.4e-15 84.7 54 74.1
A10p14880 Brassica napus HOM05D001660 ORTHO05D006486 2.4e-15 84.7 54 74.1
C09p49300 Brassica napus HOM05D001660 ORTHO05D006486 2.4e-15 84.7 54 74.1
BolC9t57781H Brassica oleracea HOM05D001660 ORTHO05D006486 2.4e-15 84.7 54 74.1
BraA10t43567Z Brassica rapa HOM05D001660 ORTHO05D006486 2.4e-15 84.7 54 74.1
Dinv42722 Davidia involucrata HOM05D001660 ORTHO05D006486 2.4e-15 84.7 48 85.4
Dinv43379 Davidia involucrata HOM05D001660 ORTHO05D006486 2.4e-15 84.7 48 85.4
TWI32G0852 Tripterygium wilfordii HOM05D001660 ORTHO05D006486 2.4e-15 84.7 48 85.4
AT5G57440 Arabidopsis thaliana HOM05D001660 ORTHO05D006486 3.1e-15 84.3 54 75.9
Carub.0008s1795 Capsella rubella HOM05D001660 ORTHO05D006486 3.1e-15 84.3 54 75.9
ECA236G3152 Erigeron canadensis HOM05D001660 ORTHO05D006486 3.1e-15 84.3 54 75.9
FAN22G1272 Fragaria x ananassa HOM05D001660 ORTHO05D006486 3.1e-15 84.3 48 87.5
Gohir.A05G004700 Gossypium hirsutum HOM05D001660 ORTHO05D006486 3.1e-15 84.3 48 87.5
Gohir.D05G005600 Gossypium hirsutum HOM05D001660 ORTHO05D006486 3.1e-15 84.3 48 87.5
Gorai.009G005400 Gossypium raimondii HOM05D001660 ORTHO05D006486 3.1e-15 84.3 48 87.5
Peaxi162Scf00231g00616 Petunia axillaris HOM05D001660 ORTHO05D006486 3.1e-15 84.3 54 74.1
Thhalv10014532m.g Eutrema salsugineum HOM05D001660 ORTHO05D006486 4.0e-15 84.0 54 74.1
THA.LOC104811788 Tarenaya hassleriana HOM05D001660 ORTHO05D006486 4.0e-15 84.0 54 75.9
Aa31LG3G13320 Aethionema arabicum HOM05D001660 ORTHO05D006486 5.3e-15 83.6 54 74.1
Hma1.2p1_1025F.1_g249290 Hydrangea macrophylla HOM05D001660 ORTHO05D006486 5.3e-15 83.6 48 83.3
Sp6g19150 Schrenkiella parvula HOM05D001660 ORTHO05D006486 5.3e-15 83.6 54 75.9
Sc14g0001270 Simmondsia chinensis HOM05D001660 ORTHO05D006486 5.3e-15 83.6 48 83.3
Dinv41247 Davidia involucrata HOM05D001660 ORTHO05D006486 6.9e-15 83.2 48 83.3
Potri.018G092500 Populus trichocarpa HOM05D001660 ORTHO05D006486 6.9e-15 83.2 48 81.2
Actinidia17318 Actinidia chinensis HOM05D001660 ORTHO05D006486 1.2e-14 82.4 48 81.2
AUR62023800 Chenopodium quinoa HOM05D001660 ORTHO05D006486 1.2e-14 82.4 54 75.9
FAN07G1551 Fragaria x ananassa HOM05D001660 ORTHO05D006486 1.2e-14 82.4 48 85.4
Phvul.003G145700 Phaseolus vulgaris HOM05D001660 ORTHO05D006486 1.2e-14 82.4 48 85.4
PGR102G1486 Punica granatum HOM05D001660 ORTHO05D006486 1.2e-14 82.4 48 83.3
Atru.chr7.624 Acer truncatum HOM05D001660 ORTHO05D006486 2.0e-14 81.6 48 79.2
arahy.Tifrunner.gnm1.ann1.0AS7E9 Arachis hypogaea HOM05D001660 ORTHO05D006486 2.0e-14 81.6 48 83.3
arahy.Tifrunner.gnm1.ann1.8SC2X9 Arachis hypogaea HOM05D001660 ORTHO05D006486 2.0e-14 81.6 48 83.3
AUR62002388 Chenopodium quinoa HOM05D001660 ORTHO05D006486 2.0e-14 81.6 54 75.9
Sabra18G0079700 Salix brachista HOM05D001660 ORTHO05D006486 2.0e-14 81.6 54 70.4
Ah.09g229880 Amaranthus hybridus HOM05D001660 ORTHO05D006486 2.6e-14 81.3 51 74.5
arahy.Tifrunner.gnm1.ann1.RX88G0 Arachis hypogaea HOM05D001660 ORTHO05D006486 2.6e-14 81.3 48 81.2
HanXRQChr05g0143001 Helianthus annuus HOM05D001660 ORTHO05D006486 2.6e-14 81.3 54 72.2
Prupe.1G086000 Prunus persica HOM05D001660 ORTHO05D006486 2.6e-14 81.3 48 79.2
FAN17G0257 Fragaria x ananassa HOM05D001660 ORTHO05D006486 3.4e-14 80.9 48 83.3
Eucgr.C02309 Eucalyptus grandis HOM05D001660 ORTHO05D006486 4.5e-14 80.5 48 81.2
QL02p097765 Quercus lobata HOM05D001660 ORTHO05D006486 4.5e-14 80.5 47 85.1
arahy.Tifrunner.gnm1.ann1.5J4LWM Arachis hypogaea HOM05D001660 ORTHO05D006486 5.8e-14 80.1 48 79.2
TPR.G5369 Trifolium pratense HOM05D001660 ORTHO05D006486 5.8e-14 80.1 54 74.1
MSTRG.6215 Avicennia marina HOM05D001660 ORTHO05D006486 7.6e-14 79.7 48 79.2
Psat5g065160 Pisum sativum HOM05D001660 ORTHO05D006486 7.6e-14 79.7 54 72.2
CSS0019633 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D006486 1.0e-13 79.3 48 81.2
MD13G1253800 Malus domestica HOM05D001660 ORTHO05D006486 1.0e-13 79.3 48 79.2
Medtr4g128090 Medicago truncatula HOM05D001660 ORTHO05D006486 1.0e-13 79.3 54 72.2
AT4G25840 Arabidopsis thaliana HOM05D001660 ORTHO05D006486 1.3e-13 79.0 48 77.1
ClCG06G013340 Citrullus lanatus HOM05D001660 ORTHO05D006486 1.3e-13 79.0 48 81.2
Glyma.13G096400 Glycine max HOM05D001660 ORTHO05D006486 1.3e-13 79.0 48 79.2
VMungo1215G3132 Vigna mungo HOM05D001660 ORTHO05D006486 1.3e-13 79.0 54 70.4
CANSAT11G2247 Cannabis sativa HOM05D001660 ORTHO05D006486 1.7e-13 78.6 48 72.9
Carub.0007s1511 Capsella rubella HOM05D001660 ORTHO05D006486 1.7e-13 78.6 48 77.1
CARHR233300 Cardamine hirsuta HOM05D001660 ORTHO05D006486 1.7e-13 78.6 48 77.1
Cpa.g.sc233.12 Carica papaya HOM05D001660 ORTHO05D006486 1.7e-13 78.6 48 79.2
Cc06_g13240 Coffea canephora HOM05D001660 ORTHO05D006486 1.7e-13 78.6 48 77.1
DCAR_014698 Daucus carota HOM05D001660 ORTHO05D006486 1.7e-13 78.6 48 79.2
Manes.14G153800 Manihot esculenta HOM05D001660 ORTHO05D006486 1.7e-13 78.6 48 79.2
Sabra06G0129700 Salix brachista HOM05D001660 ORTHO05D006486 1.7e-13 78.6 46 80.4
SalBow6G3880 Salvia bowleyana HOM05D001660 ORTHO05D006486 2.2e-13 78.2 48 79.2
Ciclev10009343m.g Citrus clementina HOM05D001660 ORTHO05D006486 2.9e-13 77.8 48 77.1
Eucgr.C02310 Eucalyptus grandis HOM05D001660 ORTHO05D006486 2.9e-13 77.8 48 79.2
Sed0009942 Sechium edule HOM05D001660 ORTHO05D006486 2.9e-13 77.8 48 81.2
AL7G27190 Arabidopsis lyrata HOM05D001660 ORTHO05D006486 3.8e-13 77.4 48 75.0
MELO3C017462.2 Cucumis melo HOM05D001660 ORTHO05D006486 3.8e-13 77.4 48 79.2
CsaV3_1G031600 Cucumis sativus L. HOM05D001660 ORTHO05D006486 3.8e-13 77.4 48 79.2
Oeu042167.1 Olea europaea HOM05D001660 ORTHO05D006486 3.8e-13 77.4 47 80.9
Migut.J01480 Erythranthe guttata HOM05D001660 ORTHO05D006486 5.0e-13 77.0 48 79.2
Sp7g23870 Schrenkiella parvula HOM05D001660 ORTHO05D006486 5.0e-13 77.0 48 77.1
Ca_21225_v3 Cicer arietinum L. HOM05D001660 ORTHO05D006486 6.5e-13 76.6 48 79.2
Lalb_Chr12g0199411 Lupinus albus HOM05D001660 ORTHO05D006486 6.5e-13 76.6 48 77.1
PSO063G3992 Papaver somniferum HOM05D001660 ORTHO05D006486 6.5e-13 76.6 48 79.2
SGA_v2.0_scaffold69G23256 Striga asiatica HOM05D000011 ORTHO05D000018 8.4e-13 76.3 47 78.7
Lalb_Chr13g0300231 Lupinus albus HOM05D001660 ORTHO05D006486 1.1e-12 75.9 48 77.1
PSO017G4075 Papaver somniferum HOM05D001660 ORTHO05D006486 1.4e-12 75.5 48 77.1
TAR625G0405 Trochodendron aralioides HOM05D001660 ORTHO05D006486 1.4e-12 75.5 48 77.1
Aa31LG3G230 Aethionema arabicum HOM05D001660 ORTHO05D006486 1.9e-12 75.1 54 63.0
SGA_v2.0_scaffold66G22449 Striga asiatica HOM05D001660 ORTHO05D006486 1.9e-12 75.1 48 72.9
Nn2g12777 Nelumbo nucifera HOM05D001660 ORTHO05D006486 2.5e-12 74.7 54 68.5
vmacro06014 Vaccinium macrocarpon HOM05D001660 ORTHO05D006486 4.2e-12 73.9 49 73.5
Thhalv10025858m.g Eutrema salsugineum HOM05D001660 ORTHO05D006486 5.5e-12 73.6 48 72.9
unitig_21.g20649 Utricularia gibba HOM05D003152 ORTHO05D004094 5.5e-12 73.6 49 75.5
Rhsim03G0264400 Rhododendron simsii HOM05D001660 ORTHO05D006486 7.1e-12 73.2 48 75.0
Aqoxy7G03078 Aquilegia oxysepala HOM05D001660 ORTHO05D006486 9.3e-12 72.8 48 70.8
BcaC06g32782 Brassica carinata HOM05D001660 ORTHO05D006486 9.3e-12 72.8 48 72.9
Phvul.003G145800 Phaseolus vulgaris HOM05D001660 ORTHO05D006486 9.3e-12 72.8 48 68.8
A03p56290 Brassica napus HOM05D001660 ORTHO05D006486 1.6e-11 72.0 48 72.9
C07p54540 Brassica napus HOM05D001660 ORTHO05D006486 1.6e-11 72.0 48 72.9
BolC7t45942H Brassica oleracea HOM05D001660 ORTHO05D006486 1.6e-11 72.0 48 72.9
BraA03t14700Z Brassica rapa HOM05D001660 ORTHO05D006486 1.6e-11 72.0 48 72.9
SGA_v2.0_scaffold14G07122 Striga asiatica HOM05D066374 ORTHO05D037484 2.1e-11 71.6 50 66.0
VMungo1215G0755 Vigna mungo HOM05D001660 ORTHO05D006486 3.5e-11 70.9 48 66.7
TPR.G5384 Trifolium pratense HOM05D001660 ORTHO05D006486 1.3e-10 68.9 54 66.7
Eucgr.C02313 Eucalyptus grandis HOM05D001660 ORTHO05D006486 3.0e-10 67.8 42 78.6
Migut.J01481 Erythranthe guttata HOM05D001660 ORTHO05D006486 3.9e-10 67.4 48 68.8
CDE04G2961 Ceratophyllum demersum HOM05D001660 ORTHO05D006486 1.5e-09 65.5 48 64.6
MBI16_g39832_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D006486 3.3e-09 64.3 48 66.7
HPP92_021946 Vanilla planifolia HOM05D001660 ORTHO05D006486 4.3e-09 63.9 48 62.5
Duzib168G0313 Durio zibethinus HOM05D001660 ORTHO05D006486 7.4e-09 63.2 38 81.6
Pp3c21_16490 Physcomitrium patens HOM05D001660 ORTHO05D006486 1.6e-08 62.0 48 54.2
Os08g0243600 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D006486 8.2e-08 59.7 52 51.9
ATR0580G358 Amborella trichopoda HOM05D001660 ORTHO05D006486 1.4e-07 58.9 48 60.4
SMO115G0322 Selaginella moellendorffii HOM05D001660 ORTHO05D006486 1.4e-07 58.9 48 54.2
ATR1149G046 Amborella trichopoda HOM05D001660 ORTHO05D006486 1.8e-07 58.5 48 60.4
Zm00001eb414640 Zea mays HOM05D001660 ORTHO05D006486 2.4e-07 58.2 52 51.9
SEGI_10124 Sequoiadendron giganteum HOM05D001660 ORTHO05D006486 5.3e-07 57.0 48 52.1
Mapoly0050s0123 Marchantia polymorpha HOM05D001660 ORTHO05D006486 9.0e-07 56.2 48 50.0
AagrBONN_evm.TU.Sc2ySwM_369.140 Anthoceros agrestis HOM05D001660 ORTHO05D006486 4.5e-06 53.9 48 50.0
Lj4g0006839 Lotus japonicus HOM05D001660 ORTHO05D006486 4.5e-06 53.9 39 71.8


User provided reference genes

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