Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 2.0e-35 151.8 71 100.0
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 7.3e-09 63.5 33 90.9
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 9.5e-09 63.2 32 93.8
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.6e-08 62.4 31 96.8
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 2.8e-08 61.6 32 90.6
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.8e-08 61.6 32 90.6
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 3.6e-08 61.2 32 87.5
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 3.6e-08 61.2 32 90.6
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 3.6e-08 61.2 32 90.6
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 3.6e-08 61.2 32 90.6
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 3.6e-08 61.2 32 90.6
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.6e-08 61.2 32 90.6
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 4.7e-08 60.8 42 71.4
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 4.7e-08 60.8 32 87.5
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 6.2e-08 60.5 32 87.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 8.1e-08 60.1 31 93.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 8.1e-08 60.1 30 96.7
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 8.1e-08 60.1 32 87.5
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.1e-07 59.7 30 93.3
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.1e-07 59.7 29 96.6
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.1e-07 59.7 29 96.6
SHI16673 Sapria himalayana HOM05D004640 ORTHO05D005489 1.1e-07 59.7 39 71.8
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.4e-07 59.3 32 87.5
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.8e-07 58.9 32 84.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 2.4e-07 58.5 32 81.2
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.4e-07 58.5 32 87.5
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 3.1e-07 58.2 32 84.4
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.1e-07 58.2 32 78.1
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.1e-07 58.2 37 78.4
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 4.0e-07 57.8 32 81.2
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 4.0e-07 57.8 32 87.5
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.5e-06 55.8 35 80.0
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 3.4e-06 54.7 33 75.8
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 3.4e-06 54.7 30 86.7


User provided reference genes

Program Settings