Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265931 Rosa chinensis HOM05D000273 ORTHO05D347511 4.6e-91 337.8 162 100.0
Zm00001eb376130 Zea mays HOM05D000273 ORTHO05D000198 8.8e-10 67.8 140 34.3
arahy.Tifrunner.gnm1.ann1.BA6QAP Arachis hypogaea HOM05D000273 ORTHO05D000198 8.3e-08 61.2 106 39.6
FAN06G3372 Fragaria x ananassa HOM05D000273 ORTHO05D000198 8.3e-08 61.2 107 39.3
FvH4_7g15800 Fragaria vesca HOM05D000273 ORTHO05D000198 1.1e-07 60.8 107 39.3
FAN01G2078 Fragaria x ananassa HOM05D000273 ORTHO05D000198 1.1e-07 60.8 107 39.3
FAN06G1428 Fragaria x ananassa HOM05D000273 ORTHO05D000198 1.1e-07 60.8 107 39.3
arahy.Tifrunner.gnm1.ann1.XQ2X1T Arachis hypogaea HOM05D000273 ORTHO05D005162 1.4e-07 60.5 106 38.7
AUR62023508 Chenopodium quinoa HOM05D000273 ORTHO05D000198 1.4e-07 60.5 104 38.5
Sed0006657 Sechium edule HOM05D000273 ORTHO05D000198 1.4e-07 60.5 136 32.4
arahy.Tifrunner.gnm1.ann1.WGX4SW Arachis hypogaea HOM05D000273 ORTHO05D000198 1.8e-07 60.1 106 39.6
TAR333G0003 Trochodendron aralioides HOM05D000273 ORTHO05D000198 1.8e-07 60.1 104 40.4
CARHR249160 Cardamine hirsuta HOM05D000273 ORTHO05D000198 2.4e-07 59.7 94 42.6
AUR62004441 Chenopodium quinoa HOM05D000273 ORTHO05D000198 2.4e-07 59.7 109 39.4
Nn7g37370 Nelumbo nucifera HOM05D000273 ORTHO05D000198 2.4e-07 59.7 94 42.6
vmacro20867 Vaccinium macrocarpon HOM05D000273 ORTHO05D000198 2.4e-07 59.7 105 37.1
vmacro20868 Vaccinium macrocarpon HOM05D000273 ORTHO05D000198 2.4e-07 59.7 105 37.1
Ah.16g101910 Amaranthus hybridus HOM05D000273 ORTHO05D000198 3.1e-07 59.3 105 38.1
Manes.01G250000 Manihot esculenta HOM05D000273 ORTHO05D000198 3.1e-07 59.3 94 42.6
arahy.Tifrunner.gnm1.ann1.Z0Y4VE Arachis hypogaea HOM05D000273 ORTHO05D000198 4.1e-07 58.9 95 41.1
CDE03G0493 Ceratophyllum demersum HOM05D000273 ORTHO05D000198 4.1e-07 58.9 95 40.0
Duzib138G1138 Durio zibethinus HOM05D000273 ORTHO05D000198 4.1e-07 58.9 105 39.0
Thecc.01G348600 Theobroma cacao HOM05D000273 ORTHO05D000198 5.4e-07 58.5 107 38.3
EL10Ac1g00321 Beta vulgaris HOM05D000273 ORTHO05D000198 7.0e-07 58.2 98 40.8
A03p31900 Brassica napus HOM05D000273 ORTHO05D000198 7.0e-07 58.2 94 42.6
CANSAT56G3393 Cannabis sativa HOM05D000273 ORTHO05D000198 7.0e-07 58.2 116 37.1
Thhalv10028725m.g Eutrema salsugineum HOM05D000273 ORTHO05D000198 7.0e-07 58.2 88 43.2
Glyma.03G254900 Glycine max HOM05D000273 ORTHO05D000198 7.0e-07 58.2 108 34.3
Sp6g00980 Schrenkiella parvula HOM05D000273 ORTHO05D000198 7.0e-07 58.2 88 43.2
BcaC01g06847 Brassica carinata HOM05D000273 ORTHO05D000198 9.2e-07 57.8 94 41.5
C03p38910 Brassica napus HOM05D000273 ORTHO05D000198 9.2e-07 57.8 94 41.5
BraA03t12362Z Brassica rapa HOM05D000273 ORTHO05D000198 9.2e-07 57.8 94 41.5
Cpa.g.sc184.1 Carica papaya HOM05D000273 ORTHO05D000198 9.2e-07 57.8 143 33.6
Lj9C593T2 Lonicera japonica HOM05D000273 ORTHO05D000198 9.2e-07 57.8 163 30.1
MD07G1143600 Malus domestica HOM05D000273 ORTHO05D000198 9.2e-07 57.8 116 36.2
BcaB01g02333 Brassica carinata HOM05D000273 ORTHO05D000198 1.2e-06 57.4 92 42.4
Carub.0006s3619 Capsella rubella HOM05D000273 ORTHO05D000198 1.2e-06 57.4 94 41.5
Ciclev10023404m.g Citrus clementina HOM05D000273 ORTHO05D000198 1.2e-06 57.4 94 41.5
CsaV3_6G001010 Cucumis sativus L. HOM05D000273 ORTHO05D000198 1.2e-06 57.4 94 39.4
RcHm_v2.0_Chr1g0358591 Rosa chinensis HOM05D000273 ORTHO05D000198 1.2e-06 57.4 107 37.4
TWI14G0862 Tripterygium wilfordii HOM05D000273 ORTHO05D000198 1.2e-06 57.4 95 38.9
Aa31LG5G830 Aethionema arabicum HOM05D000273 ORTHO05D000198 1.6e-06 57.0 98 39.8
AL6G52230 Arabidopsis lyrata HOM05D000273 ORTHO05D000198 1.6e-06 57.0 88 43.2
AT4G01130 Arabidopsis thaliana HOM05D000273 ORTHO05D000198 1.6e-06 57.0 88 43.2
Cpa.g.sc33.41 Carica papaya HOM05D000273 ORTHO05D000198 1.6e-06 57.0 148 35.1
Eucgr.D02341 Eucalyptus grandis HOM05D000273 ORTHO05D000198 1.6e-06 57.0 94 40.4
Aqoxy5G04030 Aquilegia oxysepala HOM05D000273 ORTHO05D000198 2.0e-06 56.6 96 37.5
CSS0000076 Camellia sinensis var. sinensis HOM05D000273 ORTHO05D000198 2.0e-06 56.6 91 41.8
Carub.0002s1429 Capsella rubella HOM05D000273 ORTHO05D000198 2.0e-06 56.6 133 35.3
Glyma.17G166100 Glycine max HOM05D000273 ORTHO05D000198 2.0e-06 56.6 97 39.2
Potri.014G094100 Populus trichocarpa HOM05D000273 ORTHO05D000198 2.0e-06 56.6 107 37.4
BolC3t16163H Brassica oleracea HOM05D000273 ORTHO05D000198 2.7e-06 56.2 94 41.5
CAN.G310.7 Capsicum annuum HOM05D000273 ORTHO05D000198 2.7e-06 56.2 95 40.0
Migut.B01827 Erythranthe guttata HOM05D000273 ORTHO05D000198 2.7e-06 56.2 95 40.0
Gohir.D07G227200 Gossypium hirsutum HOM05D000273 ORTHO05D000198 2.7e-06 56.2 104 37.5
Gohir.D11G098800 Gossypium hirsutum HOM05D000273 ORTHO05D000198 2.7e-06 56.2 107 36.4
Gorai.001G262100 Gossypium raimondii HOM05D000273 ORTHO05D000198 2.7e-06 56.2 104 37.5
Gorai.007G105000 Gossypium raimondii HOM05D000273 ORTHO05D000198 2.7e-06 56.2 107 36.4
Peaxi162Scf00403g00072 Petunia axillaris HOM05D000273 ORTHO05D000198 2.7e-06 56.2 137 32.8
Sabra14G0068700 Salix brachista HOM05D000273 ORTHO05D000198 2.7e-06 56.2 107 37.4
Atru.chr5.611 Acer truncatum HOM05D000273 ORTHO05D000198 3.5e-06 55.8 117 35.0
A06p42000 Brassica napus HOM05D000273 ORTHO05D000198 3.5e-06 55.8 83 43.4
BraA06t27118Z Brassica rapa HOM05D000273 ORTHO05D000198 3.5e-06 55.8 89 41.6
Cfa003840 Carpinus fangiana HOM05D000273 ORTHO05D000198 3.5e-06 55.8 94 38.3
COL.COLO4_06343 Corchorus olitorius HOM05D000273 ORTHO05D000198 3.5e-06 55.8 104 36.5
Gohir.A11G093800 Gossypium hirsutum HOM05D000273 ORTHO05D000198 3.5e-06 55.8 107 36.4
Os06g0160200 Oryza sativa ssp. japonica HOM05D000273 ORTHO05D000198 3.5e-06 55.8 161 31.1
SGA_v2.0_scaffold4G02260 Striga asiatica HOM05D000273 ORTHO05D000198 3.5e-06 55.8 91 39.6
THA.LOC104825666 Tarenaya hassleriana HOM05D000273 ORTHO05D000198 3.5e-06 55.8 83 43.4
VMungo0251G2896 Vigna mungo HOM05D000273 ORTHO05D000198 3.5e-06 55.8 95 38.9
AL5G15200 Arabidopsis lyrata HOM05D000273 ORTHO05D000198 4.5e-06 55.5 83 42.2
QL03p057359 Quercus lobata HOM05D000273 ORTHO05D000198 4.5e-06 55.5 91 38.5
QL03p057509 Quercus lobata HOM05D000273 ORTHO05D000198 4.5e-06 55.5 91 38.5
Solyc05g050210.4 Solanum lycopersicum HOM05D000273 ORTHO05D000198 4.5e-06 55.5 95 38.9
Sopen05g028640 Solanum pennellii HOM05D000273 ORTHO05D000198 4.5e-06 55.5 95 38.9
unitig_0.g332 Utricularia gibba HOM05D000273 ORTHO05D000198 4.5e-06 55.5 117 35.9
Actinidia02808 Actinidia chinensis HOM05D000273 ORTHO05D000198 5.9e-06 55.1 95 37.9
C06p42150 Brassica napus HOM05D000273 ORTHO05D000198 5.9e-06 55.1 88 42.0
Cc02_g38880 Coffea canephora HOM05D000273 ORTHO05D000198 5.9e-06 55.1 88 42.0
Haze_12266 Corylus avellana HOM05D000273 ORTHO05D000198 5.9e-06 55.1 101 37.6
DCAR_005269 Daucus carota HOM05D000273 ORTHO05D000198 5.9e-06 55.1 107 37.4
Migut.M00199 Erythranthe guttata HOM05D000273 ORTHO05D000198 5.9e-06 55.1 95 38.9
Thhalv10004667m.g Eutrema salsugineum HOM05D000273 ORTHO05D000198 5.9e-06 55.1 83 43.4
Hma1.2p1_0384F.1_g140950 Hydrangea macrophylla HOM05D000273 ORTHO05D000198 5.9e-06 55.1 94 39.4
Phvul.003G239200 Phaseolus vulgaris HOM05D000273 ORTHO05D000198 5.9e-06 55.1 97 37.1
Prupe.2G182700 Prunus persica HOM05D000273 ORTHO05D000198 5.9e-06 55.1 94 39.4
THA.LOC104801384 Tarenaya hassleriana HOM05D000273 ORTHO05D000198 5.9e-06 55.1 83 43.4
AT3G26430 Arabidopsis thaliana HOM05D000273 ORTHO05D000198 7.7e-06 54.7 83 43.4
MELO3C021168.2 Cucumis melo HOM05D000273 ORTHO05D000198 7.7e-06 54.7 129 33.3
Gohir.A07G220500 Gossypium hirsutum HOM05D000273 ORTHO05D000198 7.7e-06 54.7 104 36.5
Gohir.D10G086100 Gossypium hirsutum HOM05D000273 ORTHO05D000198 7.7e-06 54.7 103 38.8
Gorai.011G094300 Gossypium raimondii HOM05D000273 ORTHO05D000198 7.7e-06 54.7 103 38.8
Lj1g0021997 Lotus japonicus HOM05D000273 ORTHO05D000198 7.7e-06 54.7 94 37.2


User provided reference genes

Program Settings