Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265911 Rosa chinensis HOM05D010115 ORTHO05D000090 1.9e-66 257.7 245 100.0
RcHm_v2.0_Chr6g0265891 Rosa chinensis HOM05D010115 ORTHO05D000090 1.5e-31 141.7 233 83.3
Prupe.6G093300 Prunus persica HOM05D000162 ORTHO05D000090 1.2e-23 115.5 248 36.7
Prupe.3G114700 Prunus persica HOM05D000162 ORTHO05D000090 1.5e-18 98.6 101 55.4
Prupe.3G138000 Prunus persica HOM05D000162 ORTHO05D000090 1.1e-16 92.4 102 51.0
Prupe.6G117200 Prunus persica HOM05D000162 ORTHO05D000090 9.9e-15 85.9 102 52.9
Prupe.6G090500 Prunus persica HOM05D000162 ORTHO05D000090 1.3e-14 85.5 101 49.5
MD03G1106000 Malus domestica HOM05D000162 ORTHO05D000090 6.4e-14 83.2 87 54.0
Prupe.6G091000 Prunus persica HOM05D000162 ORTHO05D000090 6.4e-14 83.2 101 49.5
Prupe.6G090600 Prunus persica HOM05D000162 ORTHO05D000090 1.4e-13 82.0 101 47.5
Prupe.6G094000 Prunus persica HOM05D000162 ORTHO05D000090 1.4e-13 82.0 101 47.5
MD11G1122400 Malus domestica HOM05D000162 ORTHO05D000090 5.4e-13 80.1 82 53.7
RcHm_v2.0_Chr5g0061091 Rosa chinensis HOM05D000162 ORTHO05D000090 5.4e-13 80.1 94 51.1
MD11G1115600 Malus domestica HOM05D000162 ORTHO05D000090 7.1e-13 79.7 100 50.0
Prupe.6G091400 Prunus persica HOM05D000162 ORTHO05D000090 7.1e-13 79.7 90 50.0
RcHm_v2.0_Chr5g0077451 Rosa chinensis HOM05D000162 ORTHO05D000090 7.1e-13 79.7 96 49.0
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 9.2e-13 79.3 105 50.5
Prupe.6G086000 Prunus persica HOM05D000162 ORTHO05D000090 1.2e-12 79.0 105 51.4
MD11G1135500 Malus domestica HOM05D000162 ORTHO05D000090 1.0e-11 75.9 87 50.6
RcHm_v2.0_Chr5g0062161 Rosa chinensis HOM05D000162 ORTHO05D000090 1.0e-11 75.9 99 47.5
Prupe.6G080500 Prunus persica HOM05D000162 ORTHO05D000090 1.3e-11 75.5 109 42.2
FvH4_3g13950 Fragaria vesca HOM05D000162 ORTHO05D000090 1.7e-11 75.1 96 44.8
MD03G1113100 Malus domestica HOM05D000162 ORTHO05D000090 1.7e-11 75.1 98 43.9
RcHm_v2.0_Chr5g0069321 Rosa chinensis HOM05D000162 ORTHO05D000090 1.7e-11 75.1 94 47.9
MD10G1069200 Malus domestica HOM05D000162 ORTHO05D000090 3.0e-11 74.3 93 46.2
RcHm_v2.0_Chr5g0041821 Rosa chinensis HOM05D000162 ORTHO05D000090 5.1e-11 73.6 109 45.9
FvH4_4g22280 Fragaria vesca HOM05D000162 ORTHO05D000090 6.6e-11 73.2 84 47.6
RcHm_v2.0_Chr5g0027731 Rosa chinensis HOM05D000162 ORTHO05D000090 6.6e-11 73.2 93 48.4
FvH4_3g38931 Fragaria vesca HOM05D000162 ORTHO05D000090 8.7e-11 72.8 97 42.3
FAN11G2157 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.7e-11 72.8 121 38.0
MD03G1108100 Malus domestica HOM05D000162 ORTHO05D000090 8.7e-11 72.8 87 51.7
MD11G1128400 Malus domestica HOM05D000162 ORTHO05D000090 8.7e-11 72.8 91 48.4
FAN11G0787 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-10 72.0 96 43.8
FAN16G0356 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-10 72.0 119 41.2
MD11G1128800 Malus domestica HOM05D000162 ORTHO05D000090 1.5e-10 72.0 242 60.7
MD11G1128700 Malus domestica HOM05D000162 ORTHO05D000090 1.9e-10 71.6 92 51.1
MD03G1101000 Malus domestica HOM05D000162 ORTHO05D003288 2.5e-10 71.2 88 50.0
FvH4_6g52550 Fragaria vesca HOM05D000162 ORTHO05D000090 3.3e-10 70.9 92 42.4
FAN16G2035 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.3e-10 70.9 83 49.4
FvH4_5g09470 Fragaria vesca HOM05D000162 ORTHO05D000090 4.3e-10 70.5 97 43.3
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.3e-10 70.5 235 26.0
FAN11G2311 Fragaria x ananassa HOM05D000366 ORTHO05D000437 4.3e-10 70.5 97 41.2
FAN21G2264 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.3e-10 70.5 93 45.2
MD11G1128300 Malus domestica HOM05D014620 ORTHO05D016319 7.3e-10 69.7 51 66.7
RcHm_v2.0_Chr5g0074951 Rosa chinensis HOM05D000162 ORTHO05D000090 7.3e-10 69.7 99 45.5
MD03G1099700 Malus domestica HOM05D000162 ORTHO05D000090 9.6e-10 69.3 78 48.7
MD03G1107100 Malus domestica HOM05D000162 ORTHO05D000090 9.6e-10 69.3 92 46.7
MD03G1103500 Malus domestica HOM05D000162 ORTHO05D000090 1.3e-09 68.9 79 51.9
FAN07G1221 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.6e-09 68.6 94 42.6
RcHm_v2.0_Chr5g0078541 Rosa chinensis HOM05D009346 ORTHO05D012019 2.8e-09 67.8 51 68.6
FvH4_4g22270 Fragaria vesca HOM05D000162 ORTHO05D000090 3.6e-09 67.4 83 45.8
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.6e-09 67.4 92 40.2
FAN12G2315 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.6e-09 67.4 83 45.8
FvH4_3g44300 Fragaria vesca HOM05D000162 ORTHO05D000090 4.8e-09 67.0 87 42.5
FAN05G1495 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.8e-09 67.0 89 40.4
FAN11G2810 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.8e-09 67.0 88 43.2
FAN25G0639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.8e-09 67.0 88 43.2
FAN25G2428 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.2e-09 66.6 85 42.4
RcHm_v2.0_Chr5g0071481 Rosa chinensis HOM05D000162 ORTHO05D000090 8.1e-09 66.2 107 43.0
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 1.1e-08 65.9 112 39.3
FAN21G2184 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.1e-08 65.9 91 42.9
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 1.1e-08 65.9 83 43.4
MD11G1117500 Malus domestica HOM05D010115 ORTHO05D014601 1.1e-08 65.9 50 64.0
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 1.1e-08 65.9 193 26.9
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 1.1e-08 65.9 193 26.9
FvH4_3g38590 Fragaria vesca HOM05D000162 ORTHO05D000090 1.4e-08 65.5 91 40.7
FAN05G4021 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.4e-08 65.5 92 39.1
FAN05G5463 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.4e-08 65.5 92 39.1
RcHm_v2.0_Chr5g0069581 Rosa chinensis HOM05D000162 ORTHO05D000090 1.4e-08 65.5 95 43.2
FvH4_3g40940 Fragaria vesca HOM05D000162 ORTHO05D000090 1.8e-08 65.1 83 42.2
FAN25G0292 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.8e-08 65.1 94 41.5
FAN05G3453 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.4e-08 64.7 92 39.1
FAN11G1276 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.4e-08 64.7 114 39.5
FAN17G0052 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.4e-08 64.7 89 42.7
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.4e-08 64.7 103 43.7
FAN05G5046 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.1e-08 64.3 87 43.7
FAN11G0256 Fragaria x ananassa HOM05D000366 ORTHO05D000090 3.1e-08 64.3 82 42.7
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 3.1e-08 64.3 93 41.9
FvH4_3g33650 Fragaria vesca HOM05D000162 ORTHO05D000090 4.0e-08 63.9 87 42.5
FvH4_3g38940 Fragaria vesca HOM05D000162 ORTHO05D000090 4.0e-08 63.9 91 42.9
FAN16G2116 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.0e-08 63.9 81 44.4
FAN11G2281 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.3e-08 63.5 88 44.3
FAN16G0884 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.3e-08 63.5 88 42.0
FAN21G0021 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.3e-08 63.5 110 40.0
FAN05G2167 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.9e-08 63.2 87 41.4
FAN21G2507 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.9e-08 63.2 90 38.9
FAN05G2421 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.0e-08 62.8 88 40.9
FAN09G1490 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.0e-08 62.8 92 38.0
FAN05G4140 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-07 62.4 84 41.7
FAN05G5528 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-07 62.4 87 40.2
FAN16G0919 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-07 62.4 107 38.3
FAN21G0314 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.6e-07 61.2 88 40.9
FAN21G1710 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.6e-07 61.2 87 40.2
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 3.4e-07 60.8 70 47.1
FvH4_3g41820 Fragaria vesca HOM05D000162 ORTHO05D000090 3.4e-07 60.8 85 40.0
FAN11G0438 Fragaria x ananassa HOM05D000027 ORTHO05D001163 3.4e-07 60.8 70 47.1
FAN16G1933 Fragaria x ananassa HOM05D000027 ORTHO05D001163 3.4e-07 60.8 70 47.1
RcHm_v2.0_Chr5g0069221 Rosa chinensis HOM05D010115 ORTHO05D014601 3.4e-07 60.8 49 61.2
RcHm_v2.0_Chr5g0069231 Rosa chinensis HOM05D000162 ORTHO05D000090 3.4e-07 60.8 62 48.4
AUR62005276 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.4e-07 60.5 49 59.2
AUR62005303 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.4e-07 60.5 49 59.2
RcHm_v2.0_Chr5g0072861 Rosa chinensis HOM05D000162 ORTHO05D000090 4.4e-07 60.5 75 46.7
Hund21891 Selenicereus undatus HOM05D008994 ORTHO05D010954 4.4e-07 60.5 48 62.5
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.8e-07 60.1 49 59.2
RcHm_v2.0_Chr5g0027691 Rosa chinensis HOM05D009709 ORTHO05D003288 5.8e-07 60.1 42 69.0
FvH4_3g38020 Fragaria vesca HOM05D000162 ORTHO05D000090 7.6e-07 59.7 60 46.7
FvH4_3g38070 Fragaria vesca HOM05D000162 ORTHO05D000090 7.6e-07 59.7 60 46.7
RcHm_v2.0_Chr5g0072901 Rosa chinensis HOM05D000162 ORTHO05D000090 7.6e-07 59.7 115 36.5
AUR62000700 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.9e-07 59.3 49 59.2
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 9.9e-07 59.3 49 59.2
AUR62005167 Chenopodium quinoa HOM05D000162 ORTHO05D000090 9.9e-07 59.3 49 59.2
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.9e-07 59.3 49 59.2
AUR62017647 Chenopodium quinoa HOM05D000162 ORTHO05D003288 9.9e-07 59.3 49 57.1
RcHm_v2.0_Chr5g0073691 Rosa chinensis HOM05D000162 ORTHO05D000090 9.9e-07 59.3 117 35.9
FAN05G2783 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.3e-06 58.9 77 44.2
FAN17G0136 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.3e-06 58.9 121 36.4
RcHm_v2.0_Chr5g0062121 Rosa chinensis HOM05D065349 ORTHO05D014601 1.3e-06 58.9 38 71.1
Ah.13g076900 Amaranthus hybridus HOM05D000162 ORTHO05D000090 1.7e-06 58.5 49 57.1
FAN16G0967 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.7e-06 58.5 86 43.0
AUR62005305 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.2e-06 58.2 49 59.2
AUR62005307 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.2e-06 58.2 49 59.2
FAN21G3831 Fragaria x ananassa HOM05D000027 ORTHO05D000090 2.2e-06 58.2 104 38.5
RcHm_v2.0_Chr5g0077521 Rosa chinensis HOM05D000162 ORTHO05D000090 2.2e-06 58.2 102 39.2
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 2.9e-06 57.8 62 50.0
FAN11G2498 Fragaria x ananassa HOM05D000044 ORTHO05D000090 2.9e-06 57.8 62 50.0
Hund27505 Selenicereus undatus HOM05D021897 ORTHO05D010954 2.9e-06 57.8 50 60.0
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 3.8e-06 57.4 49 59.2
EL10Ac4g09784 Beta vulgaris HOM05D000162 ORTHO05D000090 3.8e-06 57.4 49 59.2
AUR62004849 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.8e-06 57.4 49 57.1
AUR62006790 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.8e-06 57.4 49 53.1
FAN11G0422 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.8e-06 57.4 60 45.0
MBI11_g20198_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 3.8e-06 57.4 50 54.0
AUR62000458 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.9e-06 57.0 47 59.6
AUR62006791 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.9e-06 57.0 49 57.1
AUR62006962 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.9e-06 57.0 49 59.2
FAN21G0329 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.9e-06 57.0 101 37.6
RcHm_v2.0_Chr5g0076121 Rosa chinensis HOM05D010115 ORTHO05D014601 4.9e-06 57.0 42 66.7
arahy.Tifrunner.gnm1.ann1.8GZ83G Arachis hypogaea HOM05D000162 ORTHO05D000090 6.4e-06 56.6 52 55.8
FAN05G5335 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.4e-06 56.6 76 42.1
FAN25G0502 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.4e-06 56.6 99 40.4
Hund21880 Selenicereus undatus HOM05D000162 ORTHO05D000090 6.4e-06 56.6 48 56.2
EL10Ac4g09782 Beta vulgaris HOM05D000162 ORTHO05D000090 8.4e-06 56.2 49 57.1
AUR62000443 Chenopodium quinoa HOM05D000162 ORTHO05D000090 8.4e-06 56.2 49 57.1
Dinv06480 Davidia involucrata HOM05D000162 ORTHO05D000090 8.4e-06 56.2 74 44.6
ECA233G4175 Erigeron canadensis HOM05D010115 ORTHO05D014601 8.4e-06 56.2 34 70.6
FAN16G3170 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.4e-06 56.2 50 62.0
PGSC0003DMG400003403 Solanum tuberosum HOM05D000162 ORTHO05D000090 8.4e-06 56.2 64 39.1


User provided reference genes

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