Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 3.2e-44 181.4 95 100.0
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 6.3e-40 167.2 95 92.6
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 5.3e-39 164.1 95 91.6
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.2e-38 162.9 95 91.6
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 3.4e-38 161.4 95 90.5
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 3.4e-38 161.4 95 90.5
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 3.1e-31 138.3 95 80.0
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 9.1e-31 136.7 95 78.9
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 1.6e-30 136.0 95 78.9
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 4.1e-23 111.3 95 67.4
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 3.5e-22 108.2 95 68.4
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 5.9e-22 107.5 95 65.3
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 1.7e-21 105.9 97 66.0
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 6.5e-21 104.0 95 63.2
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 1.9e-20 102.4 93 61.3
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 4.2e-20 101.3 92 63.0
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 4.2e-20 101.3 95 61.1
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 5.5e-20 100.9 95 63.2
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 5.5e-20 100.9 95 64.2
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 9.4e-20 100.1 97 61.9
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.7e-19 98.6 95 63.2
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 4.7e-19 97.8 95 60.0
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 8.0e-19 97.1 95 57.9
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 8.0e-19 97.1 95 62.1
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 2.3e-18 95.5 95 63.2
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 5.2e-18 94.4 95 61.1
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 5.2e-18 94.4 92 59.8
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 5.2e-18 94.4 95 60.0
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 6.8e-18 94.0 93 64.5
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 8.8e-18 93.6 90 65.6
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 1.5e-17 92.8 98 60.2
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.0e-17 92.4 96 59.4
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 2.0e-17 92.4 92 59.8
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 2.6e-17 92.0 90 65.6
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 3.4e-17 91.7 96 61.5
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 5.7e-17 90.9 96 60.4
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 5.7e-17 90.9 95 56.8
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 9.8e-17 90.1 90 64.4
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 9.8e-17 90.1 94 57.4
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 2.8e-16 88.6 92 57.6
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 4.8e-16 87.8 95 54.7
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.1e-15 86.7 94 57.4
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.8e-15 85.9 97 55.7
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 5.4e-15 84.3 95 58.9
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 2.7e-14 82.0 95 55.8
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 2.7e-14 82.0 102 52.9
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.5e-14 81.6 94 54.3
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 3.5e-14 81.6 101 49.5
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 3.5e-14 81.6 92 56.5
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 5.9e-14 80.9 92 58.7
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 5.9e-14 80.9 92 54.3
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.0e-13 80.1 92 54.3
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 1.7e-13 79.3 92 53.3
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.7e-13 79.3 92 53.3
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.9e-13 78.6 101 52.5
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 3.8e-13 78.2 95 53.7
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 5.0e-13 77.8 95 54.7
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 5.0e-13 77.8 65 61.5
arahy.Tifrunner.gnm1.ann1.GKZX65 Arachis hypogaea HOM05D006691 ORTHO05D007620 6.5e-13 77.4 104 45.2
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 6.5e-13 77.4 95 46.3
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 8.6e-13 77.0 100 52.0
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 8.6e-13 77.0 93 53.8
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 8.6e-13 77.0 96 47.9
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 1.1e-12 76.6 96 52.1
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 1.1e-12 76.6 95 49.5
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 1.5e-12 76.3 96 52.1
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 1.9e-12 75.9 93 50.5
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 2.5e-12 75.5 102 49.0
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 3.2e-12 75.1 92 48.9
arahy.Tifrunner.gnm1.ann1.JP7MPK Arachis hypogaea HOM05D006691 ORTHO05D007620 5.5e-12 74.3 104 45.2
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 5.5e-12 74.3 61 65.6
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 5.5e-12 74.3 88 51.1
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 7.2e-12 73.9 92 46.7
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 9.5e-12 73.6 85 55.3
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.8e-11 72.0 61 67.2
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 3.6e-11 71.6 61 65.6
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 4.7e-11 71.2 43 72.1
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 2.3e-10 68.9 95 48.4
PGR042G3893 Punica granatum HOM05D006691 ORTHO05D007620 3.0e-10 68.6 84 51.2
ATR0585G050 Amborella trichopoda HOM05D006691 ORTHO05D007620 4.0e-10 68.2 95 42.1
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 4.0e-10 68.2 87 46.0
HanXRQChr16g0505401 Helianthus annuus HOM05D006691 ORTHO05D007620 8.8e-10 67.0 95 50.5
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 8.8e-10 67.0 95 47.4
Glyma.06G010000 Glycine max HOM05D006691 ORTHO05D007620 1.5e-09 66.2 90 42.2
Glyma.08G235100 Glycine max HOM05D006691 ORTHO05D007620 4.4e-09 64.7 93 44.1
Eucgr.G01694 Eucalyptus grandis HOM05D006691 ORTHO05D007620 5.7e-09 64.3 104 44.2
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 9.8e-09 63.5 94 50.0
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 2.8e-08 62.0 43 69.8
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 6.3e-08 60.8 98 44.9
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 1.8e-07 59.3 90 37.8
Ah.01g019150 Amaranthus hybridus HOM05D001345 ORTHO05D001190 1.2e-06 56.6 68 52.9
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 1.2e-06 56.6 98 43.9
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 1.2e-06 56.6 96 40.6
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.6e-06 56.2 83 47.0
HPP92_017191 Vanilla planifolia HOM05D006691 ORTHO05D007620 1.6e-06 56.2 88 37.5
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 2.7e-06 55.5 96 39.6
Lalb_Chr03g0032901 Lupinus albus HOM05D006691 ORTHO05D007620 2.7e-06 55.5 40 55.0
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 3.5e-06 55.1 96 39.6
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 3.5e-06 55.1 96 39.6
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 3.5e-06 55.1 96 39.6
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 3.5e-06 55.1 32 68.8
HPP92_010634 Vanilla planifolia HOM05D006691 ORTHO05D007620 3.5e-06 55.1 83 41.0
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 5.9e-06 54.3 96 39.6
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 7.8e-06 53.9 96 36.5
Sc18g0005100 Simmondsia chinensis HOM05D006691 ORTHO05D007620 7.8e-06 53.9 98 39.8


User provided reference genes

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