Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 0.0e+00 1128.2 588 100.0
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 8.1e-255 883.6 585 82.1
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.8e-230 802.7 591 74.6
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.7e-202 709.1 592 69.6
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.6e-200 702.6 602 68.4
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.7e-199 698.7 602 68.4
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.1e-198 695.3 602 67.8
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 4.2e-150 535.8 577 58.2
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.5e-128 464.2 609 51.6
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 6.5e-119 432.2 369 68.0
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.7e-114 416.4 344 69.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.7e-108 395.6 364 65.4
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 9.1e-105 385.2 604 47.5
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 1.5e-86 324.7 308 62.0
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 8.6e-63 245.7 641 37.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.3e-54 216.9 638 36.4
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.8e-53 214.2 623 35.6
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.2e-51 208.8 636 35.2
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.9e-50 204.1 663 34.5
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.4e-49 201.8 638 33.9
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.6e-45 187.2 648 32.3
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 7.6e-43 179.5 562 32.6
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.5e-38 165.2 502 32.9
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-38 164.9 537 32.6
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 7.3e-38 162.9 689 31.3
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.1e-36 159.1 623 30.8
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 6.4e-34 149.8 614 31.6
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 4.2e-33 147.1 468 33.1
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.3e-31 142.1 544 31.1
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.3e-31 142.1 618 29.6
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.3e-31 142.1 607 29.2
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.3e-30 137.5 614 28.3
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 9.0e-28 129.4 668 27.7
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 7.6e-27 126.3 488 30.5
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.2e-26 124.8 508 29.9
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.9e-25 121.7 620 27.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 4.2e-25 120.6 597 29.8
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 7.1e-25 119.8 604 30.0
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 4.6e-24 117.1 509 31.4
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.3e-23 115.5 625 25.9
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.3e-23 114.8 658 27.1
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.9e-23 114.0 512 29.3
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 4.3e-22 110.5 574 29.8
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 4.3e-22 110.5 609 29.1
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 9.6e-22 109.4 514 29.6
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.6e-21 108.6 223 43.0
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.6e-21 108.6 606 28.7
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.3e-20 103.6 573 28.3
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.2e-19 102.4 636 26.6
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 4.5e-19 100.5 406 29.6
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.5e-19 100.5 553 27.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 5.8e-19 100.1 590 28.1
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 7.6e-19 99.8 609 27.3
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 7.6e-19 99.8 555 27.7
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.0e-18 99.4 365 31.5
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 4.9e-18 97.1 349 32.7
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 4.9e-18 97.1 643 27.5
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.1e-17 95.9 300 31.3
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 3.2e-17 94.4 517 26.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 4.2e-17 94.0 612 26.5
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 2.1e-16 91.7 247 34.8
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.1e-16 91.7 340 31.2
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.0e-15 89.4 217 36.4
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.3e-15 89.0 612 26.3
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.0e-15 87.8 537 28.9
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 3.9e-15 87.4 248 35.5
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 5.1e-15 87.0 511 28.4
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.7e-13 80.9 193 35.8
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.8e-13 80.5 598 24.7
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.1e-12 79.3 199 35.2
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.4e-12 79.0 628 26.0
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.2e-11 75.9 625 25.6
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.0e-11 75.1 627 25.7
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 3.4e-11 74.3 409 26.4
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 5.9e-11 73.6 448 24.3
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 7.6e-11 73.2 559 25.8
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.4e-09 68.9 604 24.7
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.2e-09 67.4 460 26.1
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 5.5e-09 67.0 213 31.9
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 7.2e-09 66.6 464 25.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 9.3e-09 66.2 120 38.3
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 9.3e-09 66.2 212 32.5
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.2e-08 65.9 212 33.5
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.6e-08 65.5 171 32.7
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.7e-08 64.7 596 25.0
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 7.9e-08 63.2 552 25.9
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.0e-07 62.8 523 25.4
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.8e-07 62.0 125 32.0
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.3e-07 61.6 125 32.0
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.3e-07 61.6 261 30.3
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 3.0e-07 61.2 130 31.5
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 5.1e-07 60.5 126 33.3
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 5.1e-07 60.5 126 33.3
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.1e-06 59.3 620 25.0
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.5e-06 58.9 564 25.0
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.5e-06 58.9 290 29.0
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.9e-06 58.5 129 31.8
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.5e-06 58.2 464 22.2
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 4.3e-06 57.4 290 29.0
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 4.3e-06 57.4 621 24.0
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 5.7e-06 57.0 128 30.5
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 5.7e-06 57.0 477 23.5
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 7.4e-06 56.6 288 28.5


User provided reference genes

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