Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 0.0e+00 1405.2 734 100.0
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 0.0e+00 1092.8 749 80.1
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.8e-307 1058.9 743 78.9
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-304 1049.7 752 77.5
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-300 1035.4 745 77.7
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.5e-295 1017.7 745 76.4
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 2.5e-253 879.0 585 82.1
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 3.6e-220 768.8 741 63.2
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.2e-175 620.9 756 54.0
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 4.4e-173 612.5 531 67.6
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.8e-161 572.8 521 67.0
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.3e-156 555.1 519 64.0
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 6.6e-145 518.8 758 48.9
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 1.1e-126 458.4 520 56.0
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 3.8e-100 370.2 776 39.2
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.8e-87 327.4 783 38.4
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.7e-84 318.2 757 37.8
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 5.0e-84 316.6 781 37.1
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.1e-82 311.2 782 36.6
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.3e-80 303.9 789 34.9
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.3e-80 303.5 794 37.2
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.1e-78 298.9 593 41.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 2.2e-76 291.2 645 38.0
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.1e-70 272.3 772 34.7
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.5e-68 263.1 815 33.5
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 3.2e-67 260.8 719 35.7
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 1.3e-63 248.8 724 34.4
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.7e-63 247.3 822 31.5
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.6e-58 231.9 692 33.1
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 4.4e-56 223.8 766 32.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 7.5e-56 223.0 755 32.1
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.3e-55 222.2 825 31.4
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 3.7e-55 220.7 754 32.0
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 4.8e-55 220.3 711 32.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.1e-54 219.2 787 31.6
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.5e-53 214.2 652 34.7
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 3.5e-53 214.2 629 35.1
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.0e-52 212.6 755 31.7
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.3e-52 212.2 750 32.1
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 5.5e-51 206.8 641 34.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.6e-50 205.3 815 31.9
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.6e-50 205.3 763 29.9
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.0e-49 202.6 770 30.8
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.8e-49 201.8 579 33.3
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 3.0e-49 201.1 358 41.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 4.0e-49 200.7 694 31.0
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 4.0e-49 200.7 768 31.2
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.3e-47 195.7 826 30.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 7.0e-46 189.9 543 33.9
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 7.0e-46 189.9 685 30.9
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 9.1e-46 189.5 774 28.4
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.6e-45 188.7 693 31.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 4.5e-45 187.2 349 40.1
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.3e-44 185.7 601 33.3
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-44 185.3 163 64.4
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 6.5e-44 183.3 447 34.5
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-43 182.6 377 38.2
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 1.1e-43 182.6 743 29.2
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.0e-41 176.0 767 28.9
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 8.8e-41 172.9 676 29.4
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.2e-40 172.6 595 32.3
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.2e-40 172.6 641 31.0
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 7.5e-40 169.9 757 30.1
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.3e-39 169.1 701 30.7
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 2.8e-39 167.9 428 33.9
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 3.7e-39 167.5 763 29.5
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.4e-38 165.6 746 29.9
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.4e-38 163.7 729 30.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 7.0e-38 163.3 637 30.3
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.3e-36 158.3 422 33.2
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.8e-36 157.5 653 29.7
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 4.3e-35 154.1 372 36.3
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 7.3e-35 153.3 780 27.2
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.2e-34 152.5 374 36.1
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.8e-34 151.4 584 30.5
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.8e-34 151.4 139 65.5
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.7e-34 150.6 753 28.6
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 6.1e-34 150.2 507 32.5
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 8.0e-34 149.8 777 29.1
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-33 149.4 136 65.4
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.5e-32 145.6 356 34.3
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 7.5e-32 143.3 738 27.9
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 3.2e-30 137.9 821 25.0
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 9.2e-30 136.3 715 27.1
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 4.6e-29 134.0 336 34.2
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 7.8e-29 133.3 375 34.4
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.0e-28 132.9 268 35.4
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.3e-28 132.5 322 32.9
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 1.7e-28 132.1 510 27.6
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 2.3e-28 131.7 275 35.3
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.3e-28 131.7 767 28.9
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 3.0e-28 131.3 760 27.1
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 3.9e-28 131.0 520 28.5
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 3.9e-28 131.0 262 37.0
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 3.9e-28 131.0 533 29.6
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 5.0e-28 130.6 269 37.2
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.5e-27 129.0 288 34.7
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.5e-27 129.0 367 34.1
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 9.5e-27 126.3 273 35.5
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.2e-26 125.9 693 26.4
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.2e-26 125.9 794 27.7
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.6e-26 125.6 280 35.0
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 3.6e-26 124.4 269 35.3
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 3.6e-26 124.4 269 35.3
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 5.2e-25 120.6 668 26.3
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.2e-24 119.4 328 34.8
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.0e-24 118.6 334 33.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 4.4e-24 117.5 549 28.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 9.8e-24 116.3 266 35.0
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 3.7e-23 114.4 257 34.2
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 4.9e-23 114.0 269 33.5
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 4.9e-23 114.0 338 34.3
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 4.9e-23 114.0 132 47.0
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 1.1e-22 112.8 743 27.2
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.9e-22 112.1 344 27.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 5.4e-22 110.5 406 29.3
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 5.4e-22 110.5 664 26.4
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.2e-21 109.4 312 33.0
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.6e-21 109.0 159 45.3
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.6e-21 109.0 517 26.9
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.6e-21 109.0 353 32.6
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 2.7e-21 108.2 285 33.7
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 1.0e-20 106.3 266 33.5
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-20 105.5 259 32.0
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.7e-20 105.5 169 37.9
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 6.6e-20 103.6 540 28.1
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.1e-19 102.8 393 32.8
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.9e-19 102.1 259 32.0
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 6.2e-18 97.1 628 26.9
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-17 96.3 417 29.3
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 4.0e-17 94.4 168 35.1
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 5.2e-17 94.0 112 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-16 92.8 254 32.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.5e-16 92.4 242 32.6
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.5e-16 92.4 264 30.7
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 1.5e-16 92.4 177 36.7
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 3.4e-16 91.3 205 32.7
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 2.2e-15 88.6 173 34.1
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.3e-15 86.7 291 28.9
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.1e-14 86.3 118 40.7
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 2.7e-13 81.6 786 23.2
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.3e-12 79.3 61 55.7
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 8.6e-12 76.6 143 34.3
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.1e-11 76.3 126 36.5
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 1.1e-11 76.3 126 36.5
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.5e-11 75.9 213 32.9
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.5e-11 75.9 550 25.6
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 9.5e-11 73.2 437 26.3
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 9.5e-11 73.2 75 42.7
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.8e-10 71.6 78 48.7
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 3.6e-10 71.2 113 36.3
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 3.6e-10 71.2 160 33.8
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.4e-06 59.3 56 50.0
Thecc.07G171300 Theobroma cacao HOM05D003739 ORTHO05D045175 1.9e-06 58.9 61 54.1


User provided reference genes

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