Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.9e-167 592.4 295 100.0
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 3.5e-166 588.2 295 99.0
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.6e-126 456.4 296 80.1
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 3.8e-120 435.3 293 78.2
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 3.3e-119 432.2 278 77.7
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.0e-117 427.2 269 78.8
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 9.8e-116 420.6 287 74.6
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.8e-115 419.1 301 71.8
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.4e-114 416.8 301 71.4
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.2e-113 413.7 268 76.1
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.6e-113 413.3 268 74.3
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.5e-113 412.1 289 72.7
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.1e-111 407.1 270 74.4
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 4.3e-111 405.2 273 73.3
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 4.3e-111 405.2 220 94.1
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 5.6e-111 404.8 271 72.7
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 9.5e-111 404.1 289 71.3
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 9.5e-111 404.1 289 71.3
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.8e-110 402.5 271 71.6
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 2.8e-110 402.5 272 72.4
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 3.6e-110 402.1 276 71.7
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 3.1e-109 399.1 271 72.3
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 4.0e-109 398.7 277 71.5
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 5.2e-109 398.3 290 68.6
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 8.9e-109 397.5 271 72.3
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.2e-108 397.1 262 72.9
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 2.0e-108 396.4 284 70.1
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.0e-108 396.4 281 69.8
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 5.8e-108 394.8 274 71.5
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 9.8e-108 394.0 292 69.9
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.3e-107 393.7 292 68.8
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.3e-107 393.7 276 69.9
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.7e-107 393.3 272 69.9
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.7e-107 393.3 268 73.9
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 4.9e-107 391.7 270 71.5
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 4.9e-107 391.7 278 70.5
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 6.4e-107 391.3 285 68.8
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.4e-106 390.2 296 67.6
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.4e-106 390.2 279 69.9
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.4e-106 390.2 267 71.5
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 3.2e-106 389.0 272 70.2
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 5.4e-106 388.3 276 69.9
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 7.0e-106 387.9 272 71.3
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 7.0e-106 387.9 267 71.5
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 9.2e-106 387.5 287 66.9
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.2e-105 387.1 276 68.8
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.2e-105 387.1 259 73.4
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.2e-105 387.1 268 71.3
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.6e-105 386.7 285 67.4
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.6e-105 386.7 266 71.4
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.6e-105 386.7 272 69.9
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 2.0e-105 386.3 269 69.1
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.0e-105 384.8 271 69.0
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 7.8e-105 384.4 271 69.7
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.0e-104 384.0 268 70.5
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.7e-104 383.3 276 69.6
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.0e-104 382.5 268 70.5
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.0e-104 382.5 268 70.5
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 3.0e-104 382.5 288 67.7
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 3.9e-104 382.1 271 69.0
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 3.9e-104 382.1 269 68.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 3.9e-104 382.1 290 65.9
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 6.6e-104 381.3 278 69.4
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.1e-103 380.6 268 70.1
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.1e-103 380.6 270 70.4
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 4.3e-103 378.6 266 69.5
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 9.5e-103 377.5 269 69.1
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.6e-102 376.7 267 67.8
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 2.1e-102 376.3 269 67.3
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.1e-102 376.3 274 68.2
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 5.2e-101 371.7 321 60.4
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 5.2e-101 371.7 304 64.1
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 6.8e-101 371.3 295 65.8
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 8.9e-101 370.9 270 68.5
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.4e-100 369.0 317 60.9
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.7e-99 366.7 273 67.8
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.2e-99 366.3 232 76.7
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 2.9e-99 365.9 274 66.8
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.9e-99 365.9 274 66.8
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 3.7e-99 365.5 275 66.5
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 8.3e-99 364.4 281 64.4
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 8.3e-99 364.4 289 63.3
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.1e-98 364.0 232 75.4
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.4e-98 363.6 255 67.8
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.4e-98 363.6 291 62.9
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 2.4e-98 362.8 269 68.0
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 4.1e-98 362.1 231 74.9
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 7.0e-98 361.3 320 58.1
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 9.2e-98 360.9 388 52.3
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-97 360.5 235 74.0
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.3e-96 357.1 284 60.9
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 1.7e-96 356.7 277 66.8
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.3e-96 356.3 270 64.1
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 5.1e-96 355.1 266 64.3
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 9.5e-95 350.9 236 72.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 7.5e-92 341.3 252 65.1
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.4e-91 338.2 238 73.5
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 6.8e-85 318.2 262 61.5
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.2e-84 317.4 268 60.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 9.2e-82 307.8 252 59.9
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-81 305.4 237 65.4
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 4.6e-81 305.4 277 55.2
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.3e-80 303.1 194 74.2
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 7.8e-73 278.1 190 70.5
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.1e-71 274.2 201 64.2
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.6e-70 270.4 222 64.9
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 1.5e-68 263.8 216 63.9
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 3.9e-64 249.2 170 76.5
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.6e-62 243.8 215 59.1
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 3.1e-61 239.6 173 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.2e-59 233.4 196 58.7
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 6.0e-57 225.3 188 65.4
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-56 223.4 157 68.8
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-53 214.5 177 70.6
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-51 208.0 176 62.5
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 4.2e-50 202.6 175 61.1
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 5.1e-48 195.7 130 73.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 8.7e-48 194.9 124 70.2
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 4.5e-44 182.6 228 47.4
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-40 169.9 157 58.6
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-40 169.5 157 59.9
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 6.7e-40 168.7 156 59.0
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-39 166.8 157 58.0
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-39 164.9 157 58.6
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-38 164.5 173 53.2
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-38 162.5 157 56.7
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-37 159.8 156 56.4
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-37 159.5 158 55.7
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-36 157.1 113 69.0
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.8e-32 144.1 280 35.7
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-32 142.5 144 55.6
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-31 140.6 157 52.2
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.6e-31 140.2 88 71.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 7.4e-31 138.7 98 67.3
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-30 135.6 160 50.0
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-30 135.6 160 50.0
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-29 134.0 94 71.3
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-29 133.7 95 71.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 3.1e-29 133.3 99 64.6
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-27 127.5 125 56.0
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-27 127.5 123 56.9
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 6.5e-27 125.6 75 77.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-22 109.4 109 56.0
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-19 100.5 139 46.0
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-18 97.8 133 45.1
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 8.0e-17 92.0 70 67.1
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.6e-15 87.0 57 73.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-14 83.2 53 75.5
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 8.3e-14 82.0 56 67.9
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-13 81.3 96 50.0
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 8.8e-08 62.0 116 37.1


User provided reference genes

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