Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0264941 Rosa chinensis HOM05D008485 ORTHO05D009647 1.7e-133 479.2 222 100.0
RcHm_v2.0_Chr1g0329081 Rosa chinensis HOM05D008485 ORTHO05D009647 6.9e-122 440.7 213 94.8
FAN11G3939 Fragaria x ananassa HOM05D008485 ORTHO05D009647 5.9e-105 384.4 206 82.5
FAN23G3051 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.2e-104 382.5 213 80.3
FAN13G3330 Fragaria x ananassa HOM05D008485 ORTHO05D009647 8.4e-104 380.6 213 79.8
FAN23G0398 Fragaria x ananassa HOM05D008485 ORTHO05D009647 8.4e-104 380.6 213 79.8
FAN10G1422 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.9e-79 299.7 166 81.9
FAN13G0756 Fragaria x ananassa HOM05D008485 ORTHO05D009647 4.7e-78 295.0 171 78.9
RcHm_v2.0_Chr5g0025151 Rosa chinensis HOM05D008485 ORTHO05D009647 5.4e-66 255.0 206 53.4
RcHm_v2.0_Chr5g0036581 Rosa chinensis HOM05D008485 ORTHO05D009647 2.7e-57 226.1 210 52.9
RcHm_v2.0_Chr5g0070861 Rosa chinensis HOM05D008485 ORTHO05D009647 2.1e-54 216.5 207 50.7
RcHm_v2.0_Chr5g0029021 Rosa chinensis HOM05D008485 ORTHO05D009647 1.8e-53 213.4 212 50.0
FvH4_1g18340 Fragaria vesca HOM05D008485 ORTHO05D009647 8.9e-53 211.1 133 72.9
FvH4_3g05430 Fragaria vesca HOM05D008485 ORTHO05D009647 8.9e-53 211.1 133 72.9
FAN17G2617 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.5e-52 210.3 124 75.8
RcHm_v2.0_Chr5g0041581 Rosa chinensis HOM05D008485 ORTHO05D009647 8.3e-43 177.9 203 45.3
RcHm_v2.0_Chr4g0434301 Rosa chinensis HOM05D008485 ORTHO05D009647 9.5e-39 164.5 131 58.0
RcHm_v2.0_Chr4g0403221 Rosa chinensis HOM05D008485 ORTHO05D009647 2.1e-38 163.3 131 57.3
RcHm_v2.0_Chr7g0208561 Rosa chinensis HOM05D008485 ORTHO05D009647 6.8e-37 158.3 127 52.0
FAN10G2059 Fragaria x ananassa HOM05D008485 ORTHO05D009647 2.5e-31 139.8 75 80.0
RcHm_v2.0_Chr1g0341051 Rosa chinensis HOM05D008485 ORTHO05D009647 3.3e-31 139.4 122 55.7
RcHm_v2.0_Chr2g0094421 Rosa chinensis HOM05D008485 ORTHO05D009647 1.2e-28 131.0 122 45.9
FAN16G1989 Fragaria x ananassa HOM05D008485 ORTHO05D009647 3.4e-28 129.4 73 83.6
FAN16G1636 Fragaria x ananassa HOM05D008485 ORTHO05D009647 8.4e-27 124.8 69 75.4
RcHm_v2.0_Chr1g0381361 Rosa chinensis HOM05D016653 ORTHO05D009647 7.1e-26 121.7 196 29.6
RcHm_v2.0_Chr3g0477491 Rosa chinensis HOM05D009879 ORTHO05D009647 9.2e-26 121.3 178 33.7
FAN26G1277 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.5e-23 114.0 158 36.1
RcHm_v2.0_Chr7g0206051 Rosa chinensis HOM05D008485 ORTHO05D009647 1.5e-23 114.0 99 55.6
FAN07G2263 Fragaria x ananassa HOM05D011706 ORTHO05D009647 1.6e-22 110.5 198 29.3
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 6.2e-22 108.6 199 27.1
RcHm_v2.0_Chr1g0332631 Rosa chinensis HOM05D009879 ORTHO05D009647 3.1e-21 106.3 161 33.5
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 6.9e-21 105.1 177 32.2
RcHm_v2.0_Chr5g0007651 Rosa chinensis HOM05D009879 ORTHO05D009647 4.4e-20 102.4 161 28.6
RcHm_v2.0_Chr5g0040531 Rosa chinensis HOM05D009879 ORTHO05D009647 4.4e-20 102.4 161 28.6
FAN17G2464 Fragaria x ananassa HOM05D009879 ORTHO05D009647 7.6e-20 101.7 153 32.0
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 3.8e-19 99.4 160 33.1
MD03G1062700 Malus domestica HOM05D000514 ORTHO05D000222 4.9e-19 99.0 183 29.5
FvH4_6g23072 Fragaria vesca HOM05D009879 ORTHO05D009647 8.4e-19 98.2 141 34.0
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 8.4e-19 98.2 149 33.6
FAN18G0028 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.1e-18 97.8 145 32.4
FAN21G1637 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.9e-18 97.1 52 84.6
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 3.2e-18 96.3 177 32.8
FAN06G0059 Fragaria x ananassa HOM05D009879 ORTHO05D009647 1.2e-17 94.4 146 31.5
FAN06G1112 Fragaria x ananassa HOM05D009879 ORTHO05D009647 2.7e-17 93.2 147 33.3
MD16G1222400 Malus domestica HOM05D000514 ORTHO05D000222 2.7e-17 93.2 184 28.8
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 2.7e-17 93.2 212 30.2
MELO3C031804.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.7e-16 90.5 177 32.2
MD09G1277700 Malus domestica HOM05D008485 ORTHO05D009647 3.9e-16 89.4 77 51.9
RcHm_v2.0_Chr1g0378881 Rosa chinensis HOM05D008485 ORTHO05D009647 3.9e-16 89.4 47 87.2
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 2.5e-15 86.7 203 28.6
FvH4_3g43970 Fragaria vesca HOM05D008485 ORTHO05D009647 3.3e-15 86.3 55 74.5
FAN14G0548 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.3e-15 85.9 205 27.8
MD12G1110400 Malus domestica HOM05D000514 ORTHO05D000222 4.3e-15 85.9 179 27.4
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 5.6e-15 85.5 201 26.9
MD04G1142700 Malus domestica HOM05D000514 ORTHO05D000222 5.6e-15 85.5 156 30.1
FAN16G0255 Fragaria x ananassa HOM05D002052 ORTHO05D000222 9.6e-15 84.7 205 27.8
FAN21G0018 Fragaria x ananassa HOM05D002052 ORTHO05D000222 9.6e-15 84.7 205 28.3
FAN15G0006 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.8e-14 83.2 205 27.8
FAN15G1885 Fragaria x ananassa HOM05D002052 ORTHO05D000222 2.8e-14 83.2 205 27.8
Lj8A600T21 Lonicera japonica HOM05D008985 ORTHO05D000222 2.8e-14 83.2 156 27.6
FAN06G3008 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.8e-14 82.4 205 27.8
FAN21G3373 Fragaria x ananassa HOM05D002052 ORTHO05D000222 6.2e-14 82.0 205 27.8
CANSAT01G1847 Cannabis sativa HOM05D014621 ORTHO05D015019 1.4e-13 80.9 172 25.0
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 1.8e-13 80.5 166 25.9
FAN01G2912 Fragaria x ananassa HOM05D009879 ORTHO05D009647 3.1e-13 79.7 134 28.4
RcHm_v2.0_Chr5g0076701 Rosa chinensis HOM05D008485 ORTHO05D009647 3.1e-13 79.7 81 40.7
RcHm_v2.0_Chr6g0272081 Rosa chinensis HOM05D008485 ORTHO05D009647 6.9e-13 78.6 81 39.5
Lsat_1_v5_gn_7_48900 Lactuca sativa HOM05D014621 ORTHO05D015019 9.0e-13 78.2 171 26.9
MD15G1306500 Malus domestica HOM05D000514 ORTHO05D000222 1.2e-12 77.8 141 30.5
FAN17G2189 Fragaria x ananassa HOM05D002052 ORTHO05D000222 1.5e-12 77.4 205 27.3
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 2.6e-12 76.6 168 26.8
FAN21G0826 Fragaria x ananassa HOM05D009879 ORTHO05D009647 2.6e-12 76.6 126 29.4
HanXRQChr05g0142331 Helianthus annuus HOM05D014621 ORTHO05D015019 2.6e-12 76.6 171 25.1
Lj1A283G17 Lonicera japonica HOM05D008705 ORTHO05D000669 7.6e-12 75.1 158 29.1
MBI19_g18856_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.9e-12 74.7 156 27.6
Lj6A369T4 Lonicera japonica HOM05D008985 ORTHO05D000222 2.2e-11 73.6 154 26.6
Dinv09859 Davidia involucrata HOM05D000791 ORTHO05D000669 8.4e-11 71.6 139 28.1
MBI19_g27593_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.4e-10 68.9 153 26.8
MBI19_g01025_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.1e-10 68.6 156 26.3
MD16G1275200 Malus domestica HOM05D000514 ORTHO05D000222 7.1e-10 68.6 156 28.2
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.3e-10 68.2 156 26.3
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.6e-09 67.4 209 26.8
CSS0026212 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.7e-09 66.6 202 25.2
CSS0007712 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 4.6e-09 65.9 222 25.2
MBI09_g30141_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.0e-09 65.5 141 27.0
CSS0009810 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.3e-08 64.3 208 25.0
MELO3C028799.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.8e-08 63.9 158 27.8
FAN07G0023 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.8e-08 63.9 33 84.8
FAN01G1265 Fragaria x ananassa HOM05D008485 ORTHO05D009647 3.0e-08 63.2 36 80.6
CSS0042483 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 3.9e-08 62.8 229 24.5
MBI03_g12026_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.1e-08 62.4 136 25.7
MBI11_g23002_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.1e-08 62.4 137 26.3
MBI19_g18851_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-07 60.8 137 26.3
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 1.5e-07 60.8 126 28.6
MBI18_g07911_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.9e-07 60.5 159 23.9
Lj5A653G18 Lonicera japonica HOM05D008985 ORTHO05D000222 2.5e-07 60.1 129 26.4
MD02G1196000 Malus domestica HOM05D000514 ORTHO05D000222 2.5e-07 60.1 81 32.1
FvH4_7g02471 Fragaria vesca HOM05D009879 ORTHO05D009647 3.3e-07 59.7 86 32.6
MBI09_g10054_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.3e-07 59.7 123 27.6
ClCG04G001600 Citrullus lanatus HOM05D001963 ORTHO05D001863 7.4e-07 58.5 95 28.4
MBI05_g43492_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.3e-06 57.8 112 29.5
RcHm_v2.0_Chr3g0469161 Rosa chinensis HOM05D009879 ORTHO05D009647 1.3e-06 57.8 55 40.0
MELO3C033043.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.8e-06 56.6 81 32.1
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 2.8e-06 56.6 156 29.5
MBI18_g14824_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.6e-06 56.2 138 23.9
PSO724G0226 Papaver somniferum HOM05D000791 ORTHO05D000669 3.6e-06 56.2 161 24.8
RcHm_v2.0_Chr7g0208571 Rosa chinensis HOM05D008485 ORTHO05D009647 3.6e-06 56.2 53 54.7
FAN17G2303 Fragaria x ananassa HOM05D002052 ORTHO05D000222 4.8e-06 55.8 107 30.8
MBI18_g17722_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.2e-06 55.5 85 28.2
PSO349G0003 Papaver somniferum HOM05D000791 ORTHO05D000669 6.2e-06 55.5 164 26.8
MBI18_g19501_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.1e-06 55.1 85 28.2


User provided reference genes

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