Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 4.4e-56 221.1 113 100.0
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.8e-47 191.0 113 78.8
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 8.2e-47 190.3 113 80.5
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 2.4e-46 188.7 113 79.6
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.2e-45 186.4 113 77.9
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.9e-35 152.5 87 81.6
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 6.6e-28 127.5 122 64.8
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.1e-26 122.5 116 59.5
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 3.0e-20 102.1 142 47.2
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 8.9e-17 90.5 107 46.7
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 8.9e-17 90.5 113 50.4
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 1.3e-15 86.7 112 45.5
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 4.9e-15 84.7 107 42.1
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 6.4e-15 84.3 81 50.6
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.1e-14 83.6 80 52.5
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 1.1e-14 83.6 80 48.8
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.1e-14 83.6 99 46.5
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 1.9e-14 82.8 113 46.0
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 4.1e-14 81.6 79 51.9
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 5.4e-14 81.3 80 53.8
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 7.0e-14 80.9 83 49.4
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.2e-13 80.1 80 45.0
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 1.6e-13 79.7 81 50.6
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 2.7e-13 79.0 87 50.6
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 3.5e-13 78.6 82 42.7
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 6.0e-13 77.8 72 55.6
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.8e-13 77.4 101 44.6
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.0e-12 77.0 80 50.0
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 1.0e-12 77.0 82 50.0
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 1.0e-12 77.0 99 41.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.0e-12 77.0 76 47.4
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 1.3e-12 76.6 87 47.1
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 1.3e-12 76.6 77 49.4
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 1.7e-12 76.3 75 46.7
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.7e-12 76.3 82 42.7
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 2.3e-12 75.9 116 40.5
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.0e-12 75.5 77 48.1
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 3.9e-12 75.1 84 45.2
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 3.9e-12 75.1 100 40.0
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 3.9e-12 75.1 80 52.5
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 5.0e-12 74.7 81 51.9
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 6.6e-12 74.3 84 51.2
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 6.6e-12 74.3 110 43.6
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 6.6e-12 74.3 82 51.2
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 8.6e-12 73.9 100 48.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 8.6e-12 73.9 75 44.0
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.1e-11 73.6 79 45.6
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 1.5e-11 73.2 80 48.8
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 1.9e-11 72.8 84 44.0
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.9e-11 72.8 80 52.5
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.9e-11 72.8 84 50.0
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.5e-11 72.4 83 43.4
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.3e-11 72.0 78 52.6
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 4.3e-11 71.6 100 40.0
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 4.3e-11 71.6 80 42.5
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 7.3e-11 70.9 79 45.6
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 9.5e-11 70.5 84 39.3
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 9.5e-11 70.5 92 42.4
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.6e-10 69.7 80 46.2
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 2.8e-10 68.9 87 50.6
Peaxi162Scf00016g00938 Petunia axillaris HOM05D007227 ORTHO05D002252 3.6e-10 68.6 80 42.5
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.7e-10 68.2 105 40.0
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 1.1e-09 67.0 83 38.6
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.1e-09 67.0 83 44.6
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 1.4e-09 66.6 77 42.9
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.4e-09 66.6 105 39.0
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.4e-09 66.6 105 39.0
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.3e-09 65.9 57 52.6
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 2.3e-09 65.9 87 41.4
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 2.3e-09 65.9 76 47.4
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 3.1e-09 65.5 60 51.7
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 3.1e-09 65.5 75 44.0
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 4.0e-09 65.1 79 43.0
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 4.0e-09 65.1 79 43.0
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 5.2e-09 64.7 97 40.2
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 6.8e-09 64.3 82 46.3
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 8.9e-09 63.9 77 45.5
Sopen01g051670 Solanum pennellii HOM05D007227 ORTHO05D002252 8.9e-09 63.9 81 43.2
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 8.9e-09 63.9 80 50.0
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 1.2e-08 63.5 96 36.5
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.5e-08 63.2 66 47.0
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.5e-08 63.2 105 41.9
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.0e-08 62.8 67 47.8
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 2.6e-08 62.4 104 40.4
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.6e-08 62.4 87 40.2
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 3.4e-08 62.0 80 46.2
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 4.4e-08 61.6 72 41.7
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 4.4e-08 61.6 112 33.9
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 5.8e-08 61.2 83 36.1
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 9.9e-08 60.5 89 40.4
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 9.9e-08 60.5 83 41.0
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.9e-08 60.5 85 38.8
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 9.9e-08 60.5 80 47.5
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.3e-07 60.1 86 39.5
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 1.3e-07 60.1 81 46.9
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.3e-07 60.1 80 40.0
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 1.3e-07 60.1 118 32.2
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 1.3e-07 60.1 75 41.3
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.7e-07 59.7 89 40.4
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 1.7e-07 59.7 83 33.7
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 1.7e-07 59.7 72 41.7
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 1.7e-07 59.7 76 40.8
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.7e-07 59.7 106 33.0
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.2e-07 59.3 91 37.4
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 2.9e-07 58.9 92 39.1
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.7e-07 58.5 81 39.5
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 4.9e-07 58.2 75 38.7
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 4.9e-07 58.2 82 40.2
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.9e-07 58.2 97 34.0
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 6.4e-07 57.8 88 33.0
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 8.3e-07 57.4 77 40.3
Carub.0001s3848 Capsella rubella HOM05D009461 ORTHO05D002252 8.3e-07 57.4 85 36.5
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 8.3e-07 57.4 86 40.7
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 8.3e-07 57.4 91 35.2
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 1.1e-06 57.0 87 34.5
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.1e-06 57.0 71 42.3
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 1.4e-06 56.6 83 34.9
BcaC06g36704 Brassica carinata HOM05D009461 ORTHO05D002252 1.9e-06 56.2 86 36.0
C07p00920 Brassica napus HOM05D009461 ORTHO05D002252 1.9e-06 56.2 86 36.0
BolC7t40528H Brassica oleracea HOM05D009461 ORTHO05D002252 1.9e-06 56.2 86 36.0
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 1.9e-06 56.2 69 42.0
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.9e-06 56.2 95 32.6
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 2.4e-06 55.8 110 33.6
BcaB07g33682 Brassica carinata HOM05D009461 ORTHO05D002252 2.4e-06 55.8 86 36.0
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 2.4e-06 55.8 80 36.2
Peaxi162Scf00003g01323 Petunia axillaris HOM05D007227 ORTHO05D002252 2.4e-06 55.8 74 37.8
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.4e-06 55.8 91 35.2
A07p00480 Brassica napus HOM05D009461 ORTHO05D002252 3.2e-06 55.5 85 36.5
BraA07t27839Z Brassica rapa HOM05D009461 ORTHO05D002252 3.2e-06 55.5 85 36.5
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 3.2e-06 55.5 83 41.0
Thhalv10011902m.g Eutrema salsugineum HOM05D009461 ORTHO05D002252 3.2e-06 55.5 86 38.4
Atru.chr5.2993 Acer truncatum HOM05D007227 ORTHO05D002252 4.1e-06 55.1 98 33.7
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 4.1e-06 55.1 89 36.0
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 4.1e-06 55.1 72 38.9
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.1e-06 55.1 80 37.5
Psat5g006600 Pisum sativum HOM05D010359 ORTHO05D002252 4.1e-06 55.1 76 39.5
VMungo1127G0650 Vigna mungo HOM05D007556 ORTHO05D002252 4.1e-06 55.1 76 35.5
AT1G49310 Arabidopsis thaliana HOM05D009461 ORTHO05D002252 5.4e-06 54.7 80 40.0
MELO3C020982.2 Cucumis melo HOM05D007227 ORTHO05D002252 5.4e-06 54.7 87 34.5
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 5.4e-06 54.7 91 35.2
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 7.1e-06 54.3 116 31.9
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 7.1e-06 54.3 91 35.2
BcaC05g27512 Brassica carinata HOM05D009461 ORTHO05D002252 9.2e-06 53.9 80 38.8
C05p34820 Brassica napus HOM05D009461 ORTHO05D002252 9.2e-06 53.9 80 38.8
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 9.2e-06 53.9 92 30.4
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 9.2e-06 53.9 92 30.4
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.2e-06 53.9 80 37.5


User provided reference genes

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