Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 4.5e-80 301.2 153 100.0
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 2.8e-74 282.0 145 99.3
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.8e-74 282.0 145 99.3
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 6.3e-74 280.8 145 98.6
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.1e-73 280.0 145 98.6
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 2.0e-64 249.2 144 89.6
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 2.2e-63 245.7 144 86.8
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 2.2e-63 245.7 144 86.8
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 2.2e-63 245.7 144 91.0
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 1.5e-62 243.0 144 87.5
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 3.2e-62 241.9 144 84.7
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 3.6e-61 238.4 144 85.4
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 6.1e-61 237.7 143 84.6
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 8.0e-61 237.3 145 84.8
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 8.0e-61 237.3 143 83.9
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 1.0e-60 236.9 144 84.7
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 1.4e-60 236.5 144 84.0
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 1.4e-60 236.5 144 84.7
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.4e-60 236.5 144 84.0
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 3.0e-60 235.3 144 84.7
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 3.0e-60 235.3 144 82.6
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 3.0e-60 235.3 144 84.0
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 4.0e-60 235.0 144 84.7
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.2e-60 234.6 145 84.1
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 6.7e-60 234.2 143 85.3
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 8.8e-60 233.8 145 83.4
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 8.8e-60 233.8 145 83.4
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 1.1e-59 233.4 144 84.7
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 2.0e-59 232.6 144 81.2
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.3e-59 231.9 143 83.9
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 3.3e-59 231.9 145 84.1
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.3e-59 231.9 144 80.6
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 4.4e-59 231.5 144 83.3
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 4.4e-59 231.5 144 83.3
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 4.4e-59 231.5 144 83.3
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 4.4e-59 231.5 144 84.0
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 5.7e-59 231.1 145 83.4
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.3e-58 229.9 144 81.2
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.7e-58 229.6 144 79.9
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.7e-58 229.6 144 79.9
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.7e-58 228.4 144 82.6
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.7e-58 228.4 144 81.9
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 4.8e-58 228.0 143 81.8
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 6.3e-58 227.6 144 81.9
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 8.2e-58 227.3 144 82.6
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.4e-57 225.7 145 82.1
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 2.4e-57 225.7 145 82.1
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 3.1e-57 225.3 145 83.4
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 5.3e-57 224.6 144 78.5
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 7.0e-57 224.2 146 78.1
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 7.0e-57 224.2 144 79.9
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.1e-57 223.8 145 81.4
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 1.2e-56 223.4 145 81.4
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 1.6e-56 223.0 144 78.5
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 1.6e-56 223.0 139 84.9
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 2.7e-56 222.2 144 77.8
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 2.7e-56 222.2 147 80.3
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 5.9e-56 221.1 144 81.2
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 5.9e-56 221.1 145 81.4
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.0e-55 220.3 144 82.6
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 1.7e-55 219.5 144 78.5
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 2.2e-55 219.2 153 79.7
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 2.9e-55 218.8 144 77.1
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 2.9e-55 218.8 144 77.1
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 3.8e-55 218.4 145 76.6
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 5.0e-55 218.0 144 77.8
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 6.5e-55 217.6 144 79.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 8.5e-55 217.2 143 76.2
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 1.5e-54 216.5 144 79.2
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 4.2e-54 214.9 144 77.8
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 5.5e-54 214.5 144 79.9
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 5.5e-54 214.5 145 77.2
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 9.4e-54 213.8 144 77.1
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 9.4e-54 213.8 144 77.8
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 1.2e-53 213.4 145 77.2
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 1.6e-53 213.0 147 76.2
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 6.1e-53 211.1 143 76.9
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 6.1e-53 211.1 146 76.0
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 1.4e-52 209.9 144 75.7
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.3e-52 209.1 148 75.7
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 3.0e-52 208.8 137 79.6
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.0e-52 208.4 148 74.3
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 4.0e-52 208.4 148 74.3
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 5.2e-52 208.0 151 77.5
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 8.8e-52 207.2 144 77.1
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 4.4e-51 204.9 147 72.8
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 4.4e-51 204.9 144 75.0
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 4.4e-51 204.9 145 74.5
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 6.3e-50 201.1 149 73.2
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 6.3e-50 201.1 142 76.1
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 8.3e-50 200.7 154 70.8
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 1.1e-49 200.3 146 72.6
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-49 200.3 142 76.1
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.8e-49 199.5 142 75.4
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.8e-49 199.5 150 72.0
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 3.1e-49 198.7 150 75.3
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 5.4e-49 198.0 149 72.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 7.0e-49 197.6 158 67.7
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 9.1e-49 197.2 150 70.7
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 2.0e-48 196.1 151 70.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.0e-48 196.1 158 67.1
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.7e-47 193.0 152 69.7
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 1.7e-47 193.0 100 99.0
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 9.4e-46 187.2 149 67.1
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 2.7e-45 185.7 115 81.7
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 8.8e-44 180.6 146 67.8
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 8.8e-44 180.6 146 67.8
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 2.2e-42 176.0 152 65.8
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 1.6e-40 169.9 159 59.1
PSO170G5319 Papaver somniferum HOM05D005136 ORTHO05D006619 2.0e-40 169.5 109 81.7
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 7.7e-40 167.5 109 80.7
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 1.0e-39 167.2 144 66.0
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 1.3e-39 166.8 143 64.3
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.7e-39 166.4 147 64.6
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.1e-38 163.7 139 66.9
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 1.1e-38 163.7 105 80.0
EL10Ac7g17776 Beta vulgaris HOM05D005136 ORTHO05D006619 1.2e-35 153.7 134 64.2
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 2.6e-35 152.5 148 57.4
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 9.8e-35 150.6 135 63.7
Atru.chr5.2947 Acer truncatum HOM05D005136 ORTHO05D006619 3.6e-29 132.1 86 80.2
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.8e-28 129.8 149 52.3
EL10Ac8g18726 Beta vulgaris HOM05D006015 ORTHO05D007816 2.3e-28 129.4 92 71.7
EL10Ac9g21097 Beta vulgaris HOM05D006015 ORTHO05D006619 2.3e-28 129.4 92 71.7
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 4.0e-28 128.6 84 77.4
SMO174G0113 Selaginella moellendorffii HOM05D005136 ORTHO05D006619 5.2e-28 128.3 131 53.4
Mapoly0003s0019 Marchantia polymorpha HOM05D005136 ORTHO05D006619 6.8e-28 127.9 128 54.7
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 1.5e-22 110.2 163 45.4
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 7.3e-22 107.8 78 70.5
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 3.1e-20 102.4 79 60.8
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 4.0e-20 102.1 88 62.5
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 1.5e-19 100.1 79 62.0
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 4.4e-19 98.6 144 46.5
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.5e-19 97.8 71 67.6
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 7.5e-19 97.8 71 67.6
AagrBONN_evm.TU.Sc2ySwM_369.532 Anthoceros agrestis HOM05D005136 ORTHO05D006619 1.7e-18 96.7 129 42.6
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.4e-17 91.7 69 59.4
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 7.1e-17 91.3 71 63.4
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 9.2e-17 90.9 69 65.2
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.6e-16 90.1 69 65.2
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 2.1e-16 89.7 69 63.8
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 6.0e-16 88.2 145 41.4
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 9.5e-14 80.9 72 56.9
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 6.2e-13 78.2 72 55.6
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 5.2e-12 75.1 70 54.3
ECA233G0803 Erigeron canadensis HOM05D005136 ORTHO05D006619 1.3e-10 70.5 122 42.6
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.4e-09 67.0 83 45.8
Peaxi162Scf00316g00313 Petunia axillaris HOM05D005136 ORTHO05D006619 6.0e-08 61.6 51 64.7
Solyc09g082750.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 1.3e-07 60.5 72 41.7
Solyc09g082740.1 Solanum lycopersicum HOM05D005136 ORTHO05D024799 5.1e-07 58.5 96 37.5
Sopen09g031600 Solanum pennellii HOM05D005136 ORTHO05D024799 6.6e-07 58.2 98 37.8
HPP92_014777 Vanilla planifolia HOM05D005136 ORTHO05D006619 1.9e-06 56.6 72 38.9


User provided reference genes

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