Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.5e-144 516.2 258 100.0
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 4.1e-126 454.9 258 88.8
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.2e-109 400.2 258 81.0
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.9e-109 397.9 228 88.2
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 2.3e-108 396.0 248 79.8
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 1.1e-91 340.5 257 66.1
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 4.3e-91 338.6 257 65.8
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.2e-88 330.5 257 63.4
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.7e-87 326.6 256 65.2
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.9e-87 325.9 256 62.1
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 8.4e-87 324.3 258 62.0
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 7.1e-86 321.2 257 63.4
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.6e-85 320.1 239 64.9
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 6.0e-85 318.2 258 61.6
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.3e-84 317.0 256 61.3
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 3.9e-84 315.5 239 64.0
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 7.3e-83 311.2 258 60.9
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.2e-82 310.5 256 63.3
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.6e-82 310.1 258 59.7
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.6e-82 310.1 239 63.2
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.8e-82 309.3 252 61.5
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 6.2e-82 308.1 258 61.6
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 4.4e-80 302.0 238 62.6
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.2e-79 299.7 258 58.5
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 2.7e-77 292.7 238 61.8
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 4.6e-77 292.0 235 61.3
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 6.0e-77 291.6 209 67.5
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 6.6e-76 288.1 256 59.4
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.7e-76 287.7 238 60.5
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.5e-75 287.0 255 56.5
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 3.3e-75 285.8 192 70.3
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 4.3e-75 285.4 237 59.5
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 4.3e-75 285.4 235 60.0
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 9.6e-75 284.3 257 54.9
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 9.6e-75 284.3 239 60.7
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.6e-74 283.5 253 58.5
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 1.8e-73 280.0 237 60.8
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 3.1e-73 279.3 238 59.2
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 4.0e-73 278.9 239 59.8
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 6.9e-73 278.1 244 58.2
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 6.9e-73 278.1 258 54.3
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.2e-72 277.3 239 58.6
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 2.6e-72 276.2 239 59.0
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.4e-72 275.8 238 58.0
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 4.4e-72 275.4 239 58.6
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 4.4e-72 275.4 238 58.0
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 5.8e-72 275.0 236 57.6
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 7.6e-72 274.6 237 57.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 2.9e-71 272.7 258 53.9
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.9e-71 271.9 242 55.8
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.1e-70 270.8 244 53.7
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.9e-70 270.0 239 57.3
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 3.2e-70 269.2 237 58.2
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 5.4e-70 268.5 259 56.0
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 5.4e-70 268.5 263 53.2
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 5.4e-70 268.5 244 55.7
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.6e-69 265.4 243 56.4
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 4.6e-69 265.4 238 55.0
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 6.0e-69 265.0 258 52.7
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 7.9e-69 264.6 232 58.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 1.0e-68 264.2 253 55.7
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.0e-68 262.7 236 56.8
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.5e-67 260.4 232 56.0
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.9e-67 260.0 240 55.0
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.5e-67 259.6 238 55.9
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 3.3e-67 259.2 245 54.3
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 7.3e-67 258.1 244 52.9
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.1e-66 256.5 250 52.8
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.8e-66 256.1 242 52.9
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.6e-66 255.8 234 53.8
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 4.8e-66 255.4 209 62.2
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.1e-65 254.2 232 56.0
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.1e-65 254.2 246 54.1
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.8e-65 253.4 244 52.5
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.8e-65 253.4 237 54.9
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.8e-65 253.4 256 50.4
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 2.4e-65 253.1 230 57.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 3.1e-65 252.7 237 54.4
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 4.0e-65 252.3 257 50.2
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 5.3e-65 251.9 244 51.6
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.0e-64 250.0 254 52.0
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.6e-64 249.6 226 54.0
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 3.4e-64 249.2 246 52.0
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 3.4e-64 249.2 233 54.1
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 4.5e-64 248.8 235 52.8
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 4.5e-64 248.8 237 51.9
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.8e-64 248.4 233 54.5
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.8e-64 248.4 233 54.5
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 1.3e-63 247.3 230 54.8
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.2e-63 246.5 244 52.0
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.2e-63 246.5 248 50.4
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.9e-63 245.4 238 51.3
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 4.9e-63 245.4 246 52.8
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 8.4e-63 244.6 237 52.7
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.1e-62 244.2 244 50.8
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.1e-62 244.2 246 51.2
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.4e-62 243.8 182 66.5
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.9e-62 243.4 254 52.0
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 2.4e-62 243.0 238 49.6
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 3.2e-62 242.7 248 51.6
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 7.1e-62 241.5 256 50.0
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 9.3e-62 241.1 238 49.2
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.2e-61 240.7 239 50.2
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.2e-61 240.7 238 50.4
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.6e-61 240.4 239 50.6
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.7e-61 239.6 239 50.2
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 3.5e-61 239.2 239 50.6
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.5e-61 239.2 215 57.7
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 3.5e-61 239.2 215 57.7
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.5e-61 239.2 239 52.7
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 6.0e-61 238.4 207 58.0
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.7e-60 234.6 225 56.0
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.5e-59 233.8 238 50.4
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.5e-59 233.8 238 50.4
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 2.8e-58 229.6 238 52.9
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 3.7e-58 229.2 237 48.9
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.0e-57 225.7 208 57.7
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 9.0e-57 224.6 208 54.3
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 3.4e-56 222.6 166 64.5
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 1.3e-55 220.7 239 50.6
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.1e-54 217.6 190 57.4
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.1e-54 217.6 190 57.4
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.5e-54 216.5 222 50.9
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 7.1e-54 214.9 143 78.3
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.7e-53 213.0 235 46.4
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 3.9e-52 209.1 216 50.0
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.1e-52 208.8 209 55.0
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.9e-51 206.8 245 47.3
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 9.6e-51 204.5 240 48.3
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 2.1e-50 203.4 209 50.7
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.6e-48 196.4 235 46.4
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 4.6e-45 185.7 193 50.3
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.3e-44 184.1 256 44.9
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.3e-44 184.1 269 40.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 2.4e-41 173.3 245 41.6
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 5.3e-41 172.2 86 93.0
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 2.2e-39 166.8 238 39.9
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.8e-39 166.0 170 48.8
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.8e-33 147.1 166 47.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.1e-29 132.1 101 61.4
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.8e-28 130.6 109 61.5
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 5.7e-27 125.6 139 51.1
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 7.0e-25 118.6 92 62.0
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.7e-23 114.0 148 43.9
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.7e-23 114.0 92 59.8
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 2.9e-23 113.2 233 36.1
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.8e-20 104.0 74 68.9
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 2.3e-20 103.6 255 32.2
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 8.8e-20 101.7 93 57.0
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.8e-17 94.0 150 39.3
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.5e-11 74.3 54 70.4


User provided reference genes

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