Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 4.7e-138 494.6 259 100.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 3.8e-15 86.3 44 93.2
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.6e-13 79.7 45 82.2
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.0e-12 78.2 45 80.0
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 2.3e-12 77.0 44 77.3
RcHm_v2.0_Chr4g0411161 Rosa chinensis HOM05D004908 ORTHO05D341662 9.8e-11 71.6 65 61.5
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.3e-10 71.2 42 76.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.3e-10 71.2 41 75.6
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.2e-10 70.5 42 73.8
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 8.3e-10 68.6 42 71.4
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 2.4e-09 67.0 41 73.2
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 7.0e-09 65.5 41 68.3
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 7.0e-09 65.5 44 61.4
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.2e-08 64.7 47 63.8
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 2.0e-08 63.9 39 71.8
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 3.5e-08 63.2 41 68.3
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 5.9e-08 62.4 41 68.3
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 5.9e-08 62.4 41 68.3
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 5.9e-08 62.4 33 90.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 7.8e-08 62.0 41 61.0
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.0e-07 61.6 62 51.6
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.3e-07 61.2 50 56.0
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.3e-07 61.2 42 64.3
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.7e-07 60.8 50 58.0
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.3e-07 60.5 46 63.0
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 2.3e-07 60.5 41 63.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 2.3e-07 60.5 41 65.9
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 2.9e-07 60.1 41 65.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 2.9e-07 60.1 50 58.0
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.9e-07 60.1 41 65.9
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 3.9e-07 59.7 41 63.4
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.0e-07 59.3 42 59.5
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.0e-07 59.3 53 47.2
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 5.0e-07 59.3 48 62.5
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.6e-07 58.9 48 62.5
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.6e-07 58.9 48 62.5
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 8.6e-07 58.5 41 61.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 8.6e-07 58.5 41 68.3
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 8.6e-07 58.5 41 63.4
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 8.6e-07 58.5 41 65.9
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 8.6e-07 58.5 33 81.8
RcHm_v2.0_Chr7g0198541 Rosa chinensis HOM05D004908 ORTHO05D342725 1.1e-06 58.2 30 90.0
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.1e-06 58.2 40 62.5
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.5e-06 57.8 41 63.4
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-06 57.8 42 54.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.9e-06 57.4 45 55.6
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.9e-06 57.4 42 59.5
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 2.5e-06 57.0 41 58.5
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 2.5e-06 57.0 41 61.0
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 3.3e-06 56.6 40 65.0
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.3e-06 56.2 46 52.2
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 5.6e-06 55.8 55 54.5
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 5.6e-06 55.8 41 58.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 7.3e-06 55.5 40 65.0
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 7.3e-06 55.5 45 57.8
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 9.5e-06 55.1 41 58.5


User provided reference genes

Program Settings