Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0263141 Rosa chinensis HOM05D013780 ORTHO05D011525 1.3e-164 583.2 343 100.0
FvH4_2g08260 Fragaria vesca HOM05D013780 ORTHO05D011525 4.1e-105 385.6 310 73.5
FAN24G1050 Fragaria x ananassa HOM05D013780 ORTHO05D011525 2.0e-104 383.3 297 78.5
FAN15G0680 Fragaria x ananassa HOM05D013780 ORTHO05D011525 3.1e-73 279.6 399 54.6
Prupe.8G102100 Prunus persica HOM05D013780 ORTHO05D011525 3.1e-52 209.9 273 52.0
QL11p042781 Quercus lobata HOM05D013780 ORTHO05D011525 7.6e-27 125.6 284 41.5
MD10G1080800 Malus domestica HOM05D013780 ORTHO05D011525 1.2e-24 118.2 261 37.2
Duzib052G1011 Durio zibethinus HOM05D011181 ORTHO05D011525 1.3e-15 88.2 227 39.2
Cfa004979 Carpinus fangiana HOM05D013780 ORTHO05D011525 7.3e-14 82.4 152 42.1
Haze_02410 Corylus avellana HOM05D013780 ORTHO05D011525 1.4e-12 78.2 213 36.6
Migut.H00187 Erythranthe guttata HOM05D001459 ORTHO05D001359 1.5e-11 74.7 211 38.9
Lalb_Chr17g0338181 Lupinus albus HOM05D011181 ORTHO05D011525 1.5e-11 74.7 181 32.6
TAR381G1105 Trochodendron aralioides HOM05D001459 ORTHO05D001359 2.6e-11 73.9 219 33.3
PSO170G2342 Papaver somniferum HOM05D001459 ORTHO05D001359 4.5e-11 73.2 184 40.2
Peaxi162Scf00427g00516 Petunia axillaris HOM05D001459 ORTHO05D001359 5.8e-11 72.8 207 39.1
Sed0024040 Sechium edule HOM05D001459 ORTHO05D001359 1.3e-10 71.6 236 34.7
PSO700G0112 Papaver somniferum HOM05D001459 ORTHO05D001359 2.2e-10 70.9 177 40.7
CAN.G358.125 Capsicum annuum HOM05D001459 ORTHO05D001359 1.1e-09 68.6 230 36.5
Glyma.20G007700 Glycine max HOM05D011181 ORTHO05D011525 1.4e-09 68.2 193 32.6
Nitab4.5_0002128g0040 Nicotiana tabacum HOM05D001459 ORTHO05D001359 4.2e-09 66.6 216 38.0
Hma1.2p1_0203F.1_g086580 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 5.4e-09 66.2 242 34.3
Dinv36055 Davidia involucrata HOM05D001459 ORTHO05D001359 7.1e-09 65.9 172 33.7
BolC1t00228H Brassica oleracea HOM05D001459 ORTHO05D001359 1.6e-08 64.7 232 34.9
ATR0733G172 Amborella trichopoda HOM05D001459 ORTHO05D001359 4.6e-08 63.2 290 31.0
VMungo1215G3207 Vigna mungo HOM05D011181 ORTHO05D011525 6.0e-08 62.8 121 35.5
arahy.Tifrunner.gnm1.ann1.1D6R9Y Arachis hypogaea HOM05D011181 ORTHO05D011525 1.3e-07 61.6 169 34.9
CARHR245080 Cardamine hirsuta HOM05D001459 ORTHO05D001359 1.3e-07 61.6 192 37.0
Potri.005G126000 Populus trichocarpa HOM05D001459 ORTHO05D001359 1.3e-07 61.6 213 31.5
Solyc02g085610.4 Solanum lycopersicum HOM05D001459 ORTHO05D001359 1.3e-07 61.6 214 37.9
Sopen02g030280 Solanum pennellii HOM05D001459 ORTHO05D001359 1.3e-07 61.6 214 37.9
Lj2g0001412 Lotus japonicus HOM05D001459 ORTHO05D001359 1.8e-07 61.2 205 36.1
BcaNung00705 Brassica carinata HOM05D001459 ORTHO05D001359 2.3e-07 60.8 232 34.9
C01p02370 Brassica napus HOM05D001459 ORTHO05D001359 2.3e-07 60.8 232 34.9
Psat6g097640 Pisum sativum HOM05D011181 ORTHO05D011525 2.3e-07 60.8 92 42.4
BcaNung04435 Brassica carinata HOM05D001459 ORTHO05D001359 3.0e-07 60.5 222 37.4
Thhalv10025733m.g Eutrema salsugineum HOM05D001459 ORTHO05D001359 3.0e-07 60.5 220 36.4
HanXRQChr03g0069071 Helianthus annuus HOM05D001459 ORTHO05D001359 3.9e-07 60.1 184 34.2
Nitab4.5_0001279g0170 Nicotiana tabacum HOM05D001459 ORTHO05D001359 3.9e-07 60.1 216 36.6
Actinidia12110 Actinidia chinensis HOM05D001459 ORTHO05D001359 5.1e-07 59.7 245 35.9
COL.COLO4_32451 Corchorus olitorius HOM05D011181 ORTHO05D011525 6.7e-07 59.3 110 38.2
Sabra07G0025300 Salix brachista HOM05D001459 ORTHO05D001359 6.7e-07 59.3 191 36.1
Thecc.02G122700 Theobroma cacao HOM05D011181 ORTHO05D011525 6.7e-07 59.3 178 36.0
Lsat_1_v5_gn_4_153461 Lactuca sativa HOM05D001459 ORTHO05D001359 8.7e-07 58.9 212 34.0
SGA_v2.0_scaffold33G13393 Striga asiatica HOM05D001459 ORTHO05D001359 8.7e-07 58.9 128 43.0
A08p22380 Brassica napus HOM05D001459 ORTHO05D001359 1.1e-06 58.5 194 38.1
BraA08t34195Z Brassica rapa HOM05D001459 ORTHO05D001359 1.1e-06 58.5 194 38.1
PGSC0003DMG400012660 Solanum tuberosum HOM05D001459 ORTHO05D001359 1.1e-06 58.5 198 34.3
Sp7g34390 Schrenkiella parvula HOM05D001459 ORTHO05D001359 1.5e-06 58.2 198 38.9
arahy.Tifrunner.gnm1.ann1.R46QP0 Arachis hypogaea HOM05D011181 ORTHO05D011525 1.9e-06 57.8 189 31.7
MSTRG.2753 Avicennia marina HOM05D001459 ORTHO05D001359 1.9e-06 57.8 213 35.7
Ca_12491_v3 Cicer arietinum L. HOM05D011181 ORTHO05D011525 1.9e-06 57.8 177 31.6
FAN28G1442 Fragaria x ananassa HOM05D001459 ORTHO05D001359 1.9e-06 57.8 128 43.8
Dinv42088 Davidia involucrata HOM05D001459 ORTHO05D045162 4.3e-06 56.6 280 27.9
Actinidia36544 Actinidia chinensis HOM05D001459 ORTHO05D001359 5.6e-06 56.2 235 34.9
A01p02180 Brassica napus HOM05D001459 ORTHO05D001359 5.6e-06 56.2 224 34.4
BraA01t00207Z Brassica rapa HOM05D001459 ORTHO05D001359 5.6e-06 56.2 224 34.4
Cpa.g.sc158.7 Carica papaya HOM05D001459 ORTHO05D001359 7.4e-06 55.8 212 35.8
Hma1.2p1_1228F.1_g268620 Hydrangea macrophylla HOM05D001459 ORTHO05D001359 7.4e-06 55.8 173 32.9
TWI73G0633 Tripterygium wilfordii HOM05D001459 ORTHO05D001359 7.4e-06 55.8 84 46.4
BcaC01g00445 Brassica carinata HOM05D001459 ORTHO05D001359 9.6e-06 55.5 187 36.4
C03p79920 Brassica napus HOM05D001459 ORTHO05D001359 9.6e-06 55.5 187 36.4
CSS0021144 Camellia sinensis var. sinensis HOM05D001459 ORTHO05D001359 9.6e-06 55.5 149 38.9


User provided reference genes

Program Settings