Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0263111 Rosa chinensis HOM05D024028 ORTHO05D029452 6.7e-213 743.8 389 100.0
FAN24G1391 Fragaria x ananassa HOM05D024028 ORTHO05D029452 7.0e-138 494.6 365 71.8
RcHm_v2.0_Chr6g0263091 Rosa chinensis HOM05D024028 ORTHO05D029452 1.0e-96 357.8 247 77.7
FvH4_2g08240 Fragaria vesca HOM05D024028 ORTHO05D029452 1.0e-75 288.1 212 69.3
RcHm_v2.0_Chr4g0419891 Rosa chinensis HOM05D001084 ORTHO05D020669 1.2e-36 158.3 362 32.0
RcHm_v2.0_Chr4g0420001 Rosa chinensis HOM05D001084 ORTHO05D020669 2.7e-36 157.1 364 32.1
RcHm_v2.0_Chr4g0395591 Rosa chinensis HOM05D001084 ORTHO05D020669 5.9e-36 156.0 364 32.1
Prupe.8G103700 Prunus persica HOM05D001084 ORTHO05D020669 1.0e-32 145.2 364 30.2
FAN01G0198 Fragaria x ananassa HOM05D000122 ORTHO05D020669 6.8e-32 142.5 352 30.1
FvH4_7g31862 Fragaria vesca HOM05D001084 ORTHO05D020669 1.7e-27 127.9 363 28.1
RcHm_v2.0_Chr6g0265941 Rosa chinensis HOM05D001084 ORTHO05D022670 5.4e-21 106.3 359 26.5
FAN24G1401 Fragaria x ananassa HOM05D001084 ORTHO05D022670 6.0e-20 102.8 328 27.4
FvH4_2g06181 Fragaria vesca HOM05D001084 ORTHO05D022670 1.2e-17 95.1 280 28.2
FvH4_2g08070 Fragaria vesca HOM05D001084 ORTHO05D029477 1.2e-17 95.1 390 25.4
Migut.H00526 Erythranthe guttata HOM05D001084 ORTHO05D001275 2.8e-17 94.0 355 26.2
Peaxi162Scf00016g00102 Petunia axillaris HOM05D001084 ORTHO05D001275 2.8e-17 94.0 352 27.0
Nitab4.5_0004280g0090 Nicotiana tabacum HOM05D001084 ORTHO05D001275 3.6e-17 93.6 352 26.7
Nitab4.5_0012349g0020 Nicotiana tabacum HOM05D001084 ORTHO05D001275 3.6e-17 93.6 352 26.7
Potri.004G150800 Populus trichocarpa HOM05D001084 ORTHO05D001275 8.1e-17 92.4 365 25.5
MD05G1070600 Malus domestica HOM05D001084 ORTHO05D001275 1.1e-16 92.0 356 27.5
RcHm_v2.0_Chr6g0262961 Rosa chinensis HOM05D001084 ORTHO05D001275 1.1e-16 92.0 356 27.2
Dinv39946 Davidia involucrata HOM05D001084 ORTHO05D001275 1.8e-16 91.3 356 27.0
Manes.15G148300 Manihot esculenta HOM05D001084 ORTHO05D001275 2.3e-16 90.9 380 25.8
MD10G1081600 Malus domestica HOM05D001084 ORTHO05D001275 3.1e-16 90.5 360 26.9
Eucgr.I02475 Eucalyptus grandis HOM05D001084 ORTHO05D001275 4.0e-16 90.1 370 25.4
Prupe.8G103100 Prunus persica HOM05D001084 ORTHO05D001275 4.0e-16 90.1 356 26.7
MELO3C021948.2 Cucumis melo HOM05D001084 ORTHO05D001275 5.2e-16 89.7 361 25.8
FAN06G4360 Fragaria x ananassa HOM05D001084 ORTHO05D020669 5.2e-16 89.7 269 27.1
SMO275G0037 Selaginella moellendorffii HOM05D001084 ORTHO05D001275 5.2e-16 89.7 355 24.8
CAN.G322.110 Capsicum annuum HOM05D001084 ORTHO05D001275 6.8e-16 89.4 353 27.2
Lalb_Chr03g0025811 Lupinus albus HOM05D001084 ORTHO05D001275 6.8e-16 89.4 357 26.9
CsaV3_2G014410 Cucumis sativus L. HOM05D001084 ORTHO05D001275 8.9e-16 89.0 361 25.2
Carub.0007s0603 Capsella rubella HOM05D001084 ORTHO05D001275 1.2e-15 88.6 355 25.9
Hma1.2p1_0652F.1_g195940 Hydrangea macrophylla HOM05D001084 ORTHO05D001275 1.2e-15 88.6 355 26.5
DCAR_007517 Daucus carota HOM05D001084 ORTHO05D001275 2.6e-15 87.4 363 26.4
Glyma.11G120500 Glycine max HOM05D001084 ORTHO05D001275 2.6e-15 87.4 352 26.7
SMO367G0681 Selaginella moellendorffii HOM05D001084 ORTHO05D001275 2.6e-15 87.4 355 24.8
CiPaw.05G061100 Carya illinoinensis HOM05D001084 ORTHO05D001275 3.4e-15 87.0 373 25.5
SMO367G1038 Selaginella moellendorffii HOM05D001084 ORTHO05D001275 3.4e-15 87.0 355 24.8
PGSC0003DMG400025185 Solanum tuberosum HOM05D001084 ORTHO05D001275 3.4e-15 87.0 352 26.4
TAR628G1290 Trochodendron aralioides HOM05D001084 ORTHO05D001275 3.4e-15 87.0 367 25.3
Lj3g0009377 Lotus japonicus HOM05D001084 ORTHO05D001275 5.8e-15 86.3 354 26.6
Medtr4g069160 Medicago truncatula HOM05D001084 ORTHO05D001275 5.8e-15 86.3 355 27.3
AUR62016703 Chenopodium quinoa HOM05D001084 ORTHO05D001275 7.5e-15 85.9 352 25.0
Solyc01g109380.3 Solanum lycopersicum HOM05D001084 ORTHO05D001275 7.5e-15 85.9 352 26.4
TPR.G28054 Trifolium pratense HOM05D001084 ORTHO05D001275 7.5e-15 85.9 353 27.2
TAR376G0890 Trochodendron aralioides HOM05D001084 ORTHO05D001275 7.5e-15 85.9 370 25.4
CSS0014022 Camellia sinensis var. sinensis HOM05D001084 ORTHO05D001275 9.8e-15 85.5 356 26.7
Cc02_g17880 Coffea canephora HOM05D001084 ORTHO05D001275 9.8e-15 85.5 352 26.4
Sopen01g051570 Solanum pennellii HOM05D001084 ORTHO05D001275 1.3e-14 85.1 352 26.4
VMungo1215G2091 Vigna mungo HOM05D001084 ORTHO05D001275 1.3e-14 85.1 351 25.6
AUR62011358 Chenopodium quinoa HOM05D001084 ORTHO05D001275 1.7e-14 84.7 352 25.0
Glyma.16G141800 Glycine max HOM05D001084 ORTHO05D001275 1.7e-14 84.7 354 24.9
Gohir.D02G202990 Gossypium hirsutum HOM05D001084 ORTHO05D001275 1.7e-14 84.7 355 24.5
QL11p042349 Quercus lobata HOM05D001084 ORTHO05D001275 1.7e-14 84.7 371 26.1
Ca_24831_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 2.2e-14 84.3 354 25.4
CsaV3_7G023240 Cucumis sativus L. HOM05D001084 ORTHO05D001275 2.2e-14 84.3 360 25.8
Migut.B00265 Erythranthe guttata HOM05D001084 ORTHO05D001275 2.2e-14 84.3 352 25.6
Lalb_Chr01g0002721 Lupinus albus HOM05D001084 ORTHO05D001275 2.2e-14 84.3 353 25.8
Cpa.g.sc62.111 Carica papaya HOM05D001084 ORTHO05D001275 2.9e-14 84.0 356 27.0
ClCG09G017820 Citrullus lanatus HOM05D001084 ORTHO05D001275 2.9e-14 84.0 359 25.3
Sed0014401 Sechium edule HOM05D001084 ORTHO05D001275 2.9e-14 84.0 356 25.3
COL.COLO4_32460 Corchorus olitorius HOM05D001084 ORTHO05D001275 3.7e-14 83.6 352 24.7
MELO3C012570.2 Cucumis melo HOM05D001084 ORTHO05D001275 3.7e-14 83.6 360 25.6
Psat7g184960 Pisum sativum HOM05D001084 ORTHO05D001275 3.7e-14 83.6 353 25.8
VMungo1215G1120 Vigna mungo HOM05D001084 ORTHO05D001275 3.7e-14 83.6 351 25.4
Actinidia27911 Actinidia chinensis HOM05D001084 ORTHO05D001275 4.9e-14 83.2 353 26.9
Gohir.A03G180000 Gossypium hirsutum HOM05D001084 ORTHO05D001275 4.9e-14 83.2 381 24.4
Gorai.005G228900 Gossypium raimondii HOM05D001084 ORTHO05D001275 4.9e-14 83.2 390 23.6
EL10Ac6g14896 Beta vulgaris HOM05D001084 ORTHO05D001275 6.4e-14 82.8 363 26.2
Actinidia17827 Actinidia chinensis HOM05D001084 ORTHO05D001275 8.3e-14 82.4 352 26.1
Haze_02417 Corylus avellana HOM05D001084 ORTHO05D001275 8.3e-14 82.4 385 24.7
Glyma.12G045600 Glycine max HOM05D001084 ORTHO05D001275 8.3e-14 82.4 352 25.6
MSTRG.16791 Avicennia marina HOM05D001084 ORTHO05D001275 1.1e-13 82.0 354 26.6
MSTRG.5390 Avicennia marina HOM05D001084 ORTHO05D001275 1.1e-13 82.0 352 25.0
ClCG02G005280 Citrullus lanatus HOM05D001084 ORTHO05D001275 1.1e-13 82.0 360 25.6
Duzib132G1258 Durio zibethinus HOM05D001084 ORTHO05D001275 1.1e-13 82.0 365 24.1
TWI75G0560 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 1.1e-13 82.0 357 26.3
Duzib248G0731 Durio zibethinus HOM05D001084 ORTHO05D001275 1.4e-13 81.6 365 24.1
Thecc.02G122100 Theobroma cacao HOM05D001084 ORTHO05D001275 1.4e-13 81.6 352 25.6
Glyma.02G059100 Glycine max HOM05D001084 ORTHO05D001275 1.9e-13 81.3 358 25.4
Lj7C11T1 Lonicera japonica HOM05D001084 ORTHO05D001275 1.9e-13 81.3 352 25.6
Manes.17G099100 Manihot esculenta HOM05D001084 ORTHO05D001275 1.9e-13 81.3 368 24.5
Rhsim05G0076700 Rhododendron simsii HOM05D001084 ORTHO05D001275 2.4e-13 80.9 352 25.3
RcHm_v2.0_Chr6g0262571 Rosa chinensis HOM05D001084 ORTHO05D029477 2.4e-13 80.9 404 23.5
Cfa004264 Carpinus fangiana HOM05D001084 ORTHO05D001275 3.2e-13 80.5 355 24.8
Oeu003715.1 Olea europaea HOM05D001084 ORTHO05D001275 3.2e-13 80.5 352 25.0
CANSAT25G0801 Cannabis sativa HOM05D001084 ORTHO05D001275 4.1e-13 80.1 356 25.8
Ciclev10025839m.g Citrus clementina HOM05D001084 ORTHO05D001275 4.1e-13 80.1 355 25.4
Dinv42091 Davidia involucrata HOM05D001084 ORTHO05D001275 4.1e-13 80.1 352 25.6
AT4G34330 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 5.4e-13 79.7 352 23.9
AUR62003196 Chenopodium quinoa HOM05D001084 ORTHO05D001275 5.4e-13 79.7 363 25.9
AL3G51980 Arabidopsis lyrata HOM05D001084 ORTHO05D001275 7.1e-13 79.3 358 26.8
Ah.02g126440 Amaranthus hybridus HOM05D001084 ORTHO05D001275 9.2e-13 79.0 358 25.4
FAN15G2711 Fragaria x ananassa HOM05D028794 ORTHO05D029477 9.2e-13 79.0 331 23.0
Medtr1g034480 Medicago truncatula HOM05D001084 ORTHO05D001275 9.2e-13 79.0 358 26.8
Nn1g05097 Nelumbo nucifera HOM05D001084 ORTHO05D001275 9.2e-13 79.0 370 24.3
Carub.0003s3289 Capsella rubella HOM05D001084 ORTHO05D001275 1.2e-12 78.6 355 26.5
Sc18g0004680 Simmondsia chinensis HOM05D001084 ORTHO05D001275 1.2e-12 78.6 352 24.1
arahy.Tifrunner.gnm1.ann1.NQI65D Arachis hypogaea HOM05D001084 ORTHO05D001275 1.6e-12 78.2 352 26.1
CDE02G2454 Ceratophyllum demersum HOM05D001084 ORTHO05D001275 1.6e-12 78.2 355 23.9
Glyma.01G178400 Glycine max HOM05D001084 ORTHO05D001275 1.6e-12 78.2 355 24.5
Lj9P366T23 Lonicera japonica HOM05D001084 ORTHO05D001275 1.6e-12 78.2 355 25.1
Lalb_Chr17g0338191 Lupinus albus HOM05D001084 ORTHO05D001275 1.6e-12 78.2 355 27.0
Thhalv10022714m.g Eutrema salsugineum HOM05D001084 ORTHO05D001275 2.1e-12 77.8 354 26.6
CiPaw.06G137800 Carya illinoinensis HOM05D001084 ORTHO05D001275 2.7e-12 77.4 368 24.5
Sabra07G0027100 Salix brachista HOM05D001084 ORTHO05D001275 2.7e-12 77.4 356 25.3
arahy.Tifrunner.gnm1.ann1.850ERF Arachis hypogaea HOM05D001084 ORTHO05D001275 3.5e-12 77.0 352 25.9
Glyma.07G161300 Glycine max HOM05D001084 ORTHO05D001275 3.5e-12 77.0 352 25.6
Lj4g0017599 Lotus japonicus HOM05D001084 ORTHO05D001275 4.6e-12 76.6 354 25.7
unitig_747.g21217 Utricularia gibba HOM05D001084 ORTHO05D001275 4.6e-12 76.6 354 23.7
Peaxi162Scf00078g00021 Petunia axillaris HOM05D001084 ORTHO05D001275 6.0e-12 76.3 358 24.9
Carub.0007s0602 Capsella rubella HOM05D001084 ORTHO05D001275 7.8e-12 75.9 357 23.5
TWI79G1335 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 7.8e-12 75.9 352 23.3
vmacro02140 Vaccinium macrocarpon HOM05D001084 ORTHO05D001275 7.8e-12 75.9 356 23.9
RcHm_v2.0_Chr0c38g0503051 Rosa chinensis HOM05D017226 ORTHO05D020714 1.0e-11 75.5 270 26.3
DCAR_026266 Daucus carota HOM05D001084 ORTHO05D001275 1.3e-11 75.1 359 26.5
PGR142G0474 Punica granatum HOM05D001084 ORTHO05D001275 1.3e-11 75.1 366 24.6
AUR62008013 Chenopodium quinoa HOM05D001084 ORTHO05D001275 1.7e-11 74.7 363 25.6
BcaB03g16654 Brassica carinata HOM05D001084 ORTHO05D001275 2.3e-11 74.3 355 25.9
DCAR_022099 Daucus carota HOM05D001084 ORTHO05D001275 2.3e-11 74.3 352 23.6
SMO367G1236 Selaginella moellendorffii HOM05D001084 ORTHO05D001275 2.3e-11 74.3 355 23.7
TWI09G0356 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 2.3e-11 74.3 357 24.1
Migut.O00626 Erythranthe guttata HOM05D001084 ORTHO05D001275 3.0e-11 73.9 353 23.8
Eucgr.H01234 Eucalyptus grandis HOM05D001084 ORTHO05D001275 3.9e-11 73.6 356 25.6
Rhsim08G0111500 Rhododendron simsii HOM05D001084 ORTHO05D001275 5.1e-11 73.2 359 26.5
BolC7t40807H Brassica oleracea HOM05D001084 ORTHO05D001275 6.6e-11 72.8 353 25.2
Peaxi162Scf00078g10022 Petunia axillaris HOM05D001084 ORTHO05D001275 6.6e-11 72.8 356 23.0
EL10Ac9g21760 Beta vulgaris HOM05D001084 ORTHO05D001275 8.6e-11 72.4 352 23.3
C07p04110 Brassica napus HOM05D001084 ORTHO05D001275 8.6e-11 72.4 353 25.2
AT2G18630 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 1.1e-10 72.0 358 26.0
A07p02020 Brassica napus HOM05D001084 ORTHO05D001275 1.1e-10 72.0 354 25.4
CARHR109220 Cardamine hirsuta HOM05D001084 ORTHO05D001275 1.1e-10 72.0 369 26.3
BraA07t27999Z Brassica rapa HOM05D001084 ORTHO05D001275 1.5e-10 71.6 354 25.4
Cpa.g.sc158.19 Carica papaya HOM05D001084 ORTHO05D001275 1.5e-10 71.6 285 24.9
Solyc11g039740.3 Solanum lycopersicum HOM05D001084 ORTHO05D001275 1.5e-10 71.6 359 23.7
BcaC06g36440 Brassica carinata HOM05D001084 ORTHO05D001275 1.9e-10 71.2 353 24.9
Cc07_g05110 Coffea canephora HOM05D001084 ORTHO05D001275 1.9e-10 71.2 310 25.5
Cfa004265 Carpinus fangiana HOM05D001084 ORTHO05D001275 2.5e-10 70.9 355 25.4
CiPaw.02G015000 Carya illinoinensis HOM05D001084 ORTHO05D001275 2.5e-10 70.9 353 22.9
Sopen11g015460 Solanum pennellii HOM05D001084 ORTHO05D001275 2.5e-10 70.9 363 24.0
Zm00001eb400890 Zea mays HOM05D001084 ORTHO05D001275 2.5e-10 70.9 349 24.4
AL8G44820 Arabidopsis lyrata HOM05D001084 ORTHO05D001275 3.3e-10 70.5 359 24.5
Eucgr.L03393 Eucalyptus grandis HOM05D001084 ORTHO05D001275 3.3e-10 70.5 356 24.2
Lj7C11G2 Lonicera japonica HOM05D001084 ORTHO05D001275 3.3e-10 70.5 357 22.7
TWI53G1697 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 3.3e-10 70.5 357 25.2
PGSC0003DMG400037697 Solanum tuberosum HOM05D001084 ORTHO05D001275 4.3e-10 70.1 362 23.2
CAN.G914.2 Capsicum annuum HOM05D001084 ORTHO05D001275 7.3e-10 69.3 361 24.1
Ah.03g139640 Amaranthus hybridus HOM05D001084 ORTHO05D001275 1.2e-09 68.6 361 22.2
CSS0030651 Camellia sinensis var. sinensis HOM05D001084 ORTHO05D001275 1.2e-09 68.6 307 25.7
Potri.005G127200 Populus trichocarpa HOM05D001084 ORTHO05D001275 6.2e-09 66.2 354 23.7
Hma1.2p1_0066F.1_g036730 Hydrangea macrophylla HOM05D001084 ORTHO05D001275 8.1e-09 65.9 304 23.7
Hma1.2p1_0939F.1_g239410 Hydrangea macrophylla HOM05D001084 ORTHO05D001275 1.1e-08 65.5 353 24.6
Nitab4.5_0002622g0020 Nicotiana tabacum HOM05D001084 ORTHO05D001275 1.4e-08 65.1 323 24.8
Glyma.11G063800 Glycine max HOM05D001084 ORTHO05D001275 1.8e-08 64.7 355 23.4
Potri.005G127401 Populus trichocarpa HOM05D001084 ORTHO05D001275 1.8e-08 64.7 354 23.2
Peaxi162Scf00078g00013 Petunia axillaris HOM05D001084 ORTHO05D001275 2.3e-08 64.3 355 22.3
Eucgr.H01233 Eucalyptus grandis HOM05D001084 ORTHO05D001275 4.0e-08 63.5 339 24.8
Nitab4.5_0000107g0040 Nicotiana tabacum HOM05D001084 ORTHO05D001275 5.2e-08 63.2 309 24.3
Psat5g203480 Pisum sativum HOM05D001084 ORTHO05D001275 5.2e-08 63.2 341 23.5
RcHm_v2.0_Chr6g0267181 Rosa chinensis HOM05D024028 ORTHO05D341564 5.2e-08 63.2 300 23.0
Potri.005G127300 Populus trichocarpa HOM05D001084 ORTHO05D001275 8.9e-08 62.4 354 23.4
FAN27G3112 Fragaria x ananassa HOM05D001084 ORTHO05D022670 2.0e-07 61.2 150 30.7
FAN05G3994 Fragaria x ananassa HOM05D028794 ORTHO05D045768 4.4e-07 60.1 242 25.2
FvH4_2g08060 Fragaria vesca HOM05D028794 ORTHO05D045768 7.6e-07 59.3 242 25.6
RcHm_v2.0_Chr0c38g0503081 Rosa chinensis HOM05D017226 ORTHO05D020714 1.3e-06 58.5 270 24.4
RcHm_v2.0_Chr6g0262581 Rosa chinensis HOM05D017226 ORTHO05D020714 1.3e-06 58.5 270 24.4
FAN03G1277 Fragaria x ananassa HOM05D001084 ORTHO05D022670 2.9e-06 57.4 388 23.5
Carub.0008s2784 Capsella rubella HOM05D001084 ORTHO05D001275 3.7e-06 57.0 361 21.6
Lj7C11T3 Lonicera japonica HOM05D001084 ORTHO05D001275 3.7e-06 57.0 353 22.4


User provided reference genes

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