Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0262741 Rosa chinensis HOM05D006849 ORTHO05D003348 4.2e-83 311.2 148 100.0
RcHm_v2.0_Chr5g0035621 Rosa chinensis HOM05D006849 ORTHO05D003348 1.1e-80 303.1 147 98.0
RcHm_v2.0_Chr1g0320331 Rosa chinensis HOM05D006849 ORTHO05D003348 6.3e-71 270.8 135 96.3
RcHm_v2.0_Chr5g0063301 Rosa chinensis HOM05D006849 ORTHO05D003348 3.1e-70 268.5 135 95.6
RcHm_v2.0_Chr3g0491361 Rosa chinensis HOM05D006849 ORTHO05D003348 4.1e-54 214.9 115 89.6
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 1.0e-44 183.7 140 58.6
RcHm_v2.0_Chr5g0066571 Rosa chinensis HOM05D006849 ORTHO05D003348 3.6e-42 175.3 143 53.8
RcHm_v2.0_Chr5g0053321 Rosa chinensis HOM05D006849 ORTHO05D003348 3.4e-40 168.7 143 53.1
RcHm_v2.0_Chr1g0371171 Rosa chinensis HOM05D006849 ORTHO05D003348 1.7e-39 166.4 151 52.3
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 1.6e-34 149.8 144 47.2
RcHm_v2.0_Chr2g0122381 Rosa chinensis HOM05D006849 ORTHO05D003348 3.6e-34 148.7 131 51.1
RcHm_v2.0_Chr7g0212031 Rosa chinensis HOM05D006849 ORTHO05D003348 2.3e-33 146.0 121 54.5
RcHm_v2.0_Chr2g0133331 Rosa chinensis HOM05D006849 ORTHO05D003348 1.2e-32 143.7 128 50.0
FAN21G2011 Fragaria x ananassa HOM05D006849 ORTHO05D003348 7.5e-32 141.0 133 48.9
FAN16G1404 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.7e-31 139.8 129 47.3
FAN14G2538 Fragaria x ananassa HOM05D006849 ORTHO05D003348 4.9e-31 138.3 133 48.1
FAN22G1474 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.2e-30 134.0 145 46.2
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 7.8e-29 131.0 140 44.3
RcHm_v2.0_Chr2g0174211 Rosa chinensis HOM05D006849 ORTHO05D003348 1.3e-28 130.2 122 51.6
FvH4_5g21501 Fragaria vesca HOM05D006849 ORTHO05D003348 8.6e-28 127.5 119 44.5
FvH4_2g22171 Fragaria vesca HOM05D006849 ORTHO05D003348 5.6e-27 124.8 142 41.5
FAN02G2385 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.6e-26 123.2 139 40.3
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 6.2e-26 121.3 137 40.1
FAN06G0436 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.4e-25 120.2 143 38.5
RcHm_v2.0_Chr2g0133271 Rosa chinensis HOM05D006849 ORTHO05D003348 6.8e-25 117.9 103 51.5
FAN23G2888 Fragaria x ananassa HOM05D006849 ORTHO05D003348 9.8e-24 114.0 140 37.9
FvH4_5g19920 Fragaria vesca HOM05D006849 ORTHO05D003348 1.7e-23 113.2 140 38.6
FvH4_2g06412 Fragaria vesca HOM05D006849 ORTHO05D003348 1.1e-22 110.5 94 54.3
FAN14G0390 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.4e-22 110.2 100 46.0
FAN01G0657 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.5e-19 99.4 135 35.6
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.5e-19 99.4 135 35.6
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 3.3e-19 99.0 135 35.6
FvH4_4g22470 Fragaria vesca HOM05D006849 ORTHO05D003348 1.6e-18 96.7 94 48.9
FAN26G2587 Fragaria x ananassa HOM05D007856 ORTHO05D003348 1.6e-18 96.7 135 37.8
FvH4_2g08146 Fragaria vesca HOM05D007856 ORTHO05D003348 3.6e-18 95.5 135 35.6
FvH4_6g08820 Fragaria vesca HOM05D007856 ORTHO05D003348 6.2e-18 94.7 134 36.6
FAN10G4353 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.1e-18 94.4 123 37.4
RcHm_v2.0_Chr5g0050871 Rosa chinensis HOM05D006849 ORTHO05D003348 1.4e-17 93.6 70 57.1
FvH4_1g07041 Fragaria vesca HOM05D007856 ORTHO05D003348 2.3e-17 92.8 134 33.6
FAN21G0042 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.0e-17 92.0 127 31.5
MD07G1084700 Malus domestica HOM05D006849 ORTHO05D003348 1.2e-16 90.5 143 28.7
FAN24G3491 Fragaria x ananassa HOM05D006849 ORTHO05D003348 5.8e-16 88.2 80 47.5
FAN24G0953 Fragaria x ananassa HOM05D007856 ORTHO05D003348 9.9e-16 87.4 134 32.8
Potri.019G061550 Populus trichocarpa HOM05D006849 ORTHO05D003348 1.7e-15 86.7 135 34.8
FAN20G3088 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.2e-15 86.3 139 33.8
Potri.003G004401 Populus trichocarpa HOM05D006849 ORTHO05D003348 4.9e-15 85.1 134 34.3
FAN16G1806 Fragaria x ananassa HOM05D006849 ORTHO05D003348 8.3e-15 84.3 85 43.5
RcHm_v2.0_Chr4g0413141 Rosa chinensis HOM05D006849 ORTHO05D003348 8.3e-15 84.3 79 45.6
FAN04G0160 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.4e-14 82.8 106 37.7
FAN15G3621 Fragaria x ananassa HOM05D006849 ORTHO05D003348 2.7e-13 79.3 85 41.2
FAN23G1437 Fragaria x ananassa HOM05D000005 ORTHO05D003348 2.7e-13 79.3 150 30.0
FvH4_3g10141 Fragaria vesca HOM05D007856 ORTHO05D003348 4.6e-13 78.6 110 35.5
FvH4_7g08311 Fragaria vesca HOM05D007856 ORTHO05D003348 4.6e-13 78.6 110 35.5
FvH4_7g18891 Fragaria vesca HOM05D007856 ORTHO05D003348 4.6e-13 78.6 110 35.5
RcHm_v2.0_Chr1g0378741 Rosa chinensis HOM05D006849 ORTHO05D003348 6.0e-13 78.2 65 53.8
FAN07G1000 Fragaria x ananassa HOM05D006849 ORTHO05D003348 1.0e-12 77.4 112 39.3
MD17G1252600 Malus domestica HOM05D006849 ORTHO05D003348 2.3e-12 76.3 82 41.5
FAN19G3137 Fragaria x ananassa HOM05D006849 ORTHO05D003348 3.3e-11 72.4 70 44.3
MD11G1203900 Malus domestica HOM05D007856 ORTHO05D003348 1.2e-10 70.5 102 30.4
FvH4_3g14392 Fragaria vesca HOM05D000004 ORTHO05D000002 4.7e-10 68.6 93 32.3
FAN16G3654 Fragaria x ananassa HOM05D007856 ORTHO05D003348 6.2e-10 68.2 74 37.8
RcHm_v2.0_Chr7g0184001 Rosa chinensis HOM05D006849 ORTHO05D003348 8.1e-10 67.8 38 81.6
FvH4_5g26612 Fragaria vesca HOM05D007856 ORTHO05D003348 1.1e-09 67.4 72 37.5
FAN17G1070 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.0e-09 65.5 80 37.5
PSO675G3596 Papaver somniferum HOM05D002907 ORTHO05D013727 4.0e-09 65.5 122 32.0
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 2.0e-08 63.2 85 36.5
SEGI_23554 Sequoiadendron giganteum HOM05D000824 ORTHO05D003555 3.4e-08 62.4 135 27.4
FAN13G2002 Fragaria x ananassa HOM05D000824 ORTHO05D003555 7.6e-08 61.2 137 25.5
FAN09G1384 Fragaria x ananassa HOM05D000053 ORTHO05D000448 2.2e-07 59.7 100 29.0
FvH4_5g13771 Fragaria vesca HOM05D000824 ORTHO05D003555 3.8e-07 58.9 137 24.1
FAN18G4284 Fragaria x ananassa HOM05D000824 ORTHO05D003555 3.8e-07 58.9 137 24.1
RcHm_v2.0_Chr5g0067561 Rosa chinensis HOM05D006849 ORTHO05D003348 3.8e-07 58.9 61 41.0
RcHm_v2.0_Chr7g0230621 Rosa chinensis HOM05D006849 ORTHO05D003348 3.8e-07 58.9 61 41.0
TWI73G0686 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.8e-07 58.9 136 26.5
FAN08G3534 Fragaria x ananassa HOM05D007856 ORTHO05D003348 4.9e-07 58.5 123 29.3
Gohir.A03G070300 Gossypium hirsutum HOM05D000824 ORTHO05D003555 4.9e-07 58.5 134 24.6
TWI60G0328 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 4.9e-07 58.5 136 27.2
FvH4_2g13511 Fragaria vesca HOM05D006849 ORTHO05D003348 6.4e-07 58.2 58 37.9
FAN20G3125 Fragaria x ananassa HOM05D006849 ORTHO05D003348 6.4e-07 58.2 147 29.3
MD02G1253200 Malus domestica HOM05D037583 ORTHO05D003348 6.4e-07 58.2 79 32.9
MD02G1254000 Malus domestica HOM05D037583 ORTHO05D003348 6.4e-07 58.2 79 32.9
Aa31LG3G18510 Aethionema arabicum HOM05D000824 ORTHO05D003555 1.9e-06 56.6 134 23.9
Gorai.003G101500 Gossypium raimondii HOM05D000824 ORTHO05D003555 1.9e-06 56.6 134 23.9
TWI53G0769 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.9e-06 56.6 123 24.4
Thecc.04G109000 Theobroma cacao HOM05D007876 ORTHO05D007430 3.2e-06 55.8 96 25.0
MD14G1159700 Malus domestica HOM05D006849 ORTHO05D003348 4.2e-06 55.5 53 35.8
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 5.4e-06 55.1 138 26.1
Lj4g0021262 Lotus japonicus HOM05D000824 ORTHO05D003555 5.4e-06 55.1 134 23.9
FvH4_4g24650 Fragaria vesca HOM05D007856 ORTHO05D003348 7.1e-06 54.7 139 28.1
Gohir.D03G096700 Gossypium hirsutum HOM05D000824 ORTHO05D003555 7.1e-06 54.7 134 23.9
CANSAT80G1236 Cannabis sativa HOM05D000824 ORTHO05D003555 9.2e-06 54.3 134 23.1
DCAR_002704 Daucus carota HOM05D002492 ORTHO05D002621 9.2e-06 54.3 122 27.0
DCAR_026108 Daucus carota HOM05D002492 ORTHO05D002621 9.2e-06 54.3 122 27.0


User provided reference genes

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