Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0261721 Rosa chinensis HOM05D041862 ORTHO05D018019 4.6e-76 287.7 136 100.0
RcHm_v2.0_Chr3g0453341 Rosa chinensis HOM05D000002 ORTHO05D000047 7.6e-39 164.1 131 58.8
RcHm_v2.0_Chr4g0394021 Rosa chinensis HOM05D000002 ORTHO05D000047 1.4e-32 143.3 123 60.2
TWI79G1645 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 4.0e-32 141.7 134 50.7
RcHm_v2.0_Chr7g0188861 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-31 140.2 123 59.3
TWI63G0245 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 2.2e-30 136.0 125 52.0
RcHm_v2.0_Chr1g0322851 Rosa chinensis HOM05D000002 ORTHO05D000047 6.5e-30 134.4 137 52.6
RcHm_v2.0_Chr2g0156071 Rosa chinensis HOM05D000002 ORTHO05D000001 2.5e-29 132.5 137 52.6
RcHm_v2.0_Chr4g0388371 Rosa chinensis HOM05D000002 ORTHO05D000047 6.7e-27 124.4 123 50.4
FvH4_2g17332 Fragaria vesca HOM05D000002 ORTHO05D000001 7.4e-26 120.9 129 49.6
RcHm_v2.0_Chr5g0064121 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-25 119.8 135 47.4
TWI31G1243 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 2.8e-25 119.0 128 47.7
TWI34G1144 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 2.8e-25 119.0 128 47.7
MD10G1307000 Malus domestica HOM05D000002 ORTHO05D000001 3.7e-25 118.6 130 46.9
MD11G1107300 Malus domestica HOM05D000002 ORTHO05D000001 4.8e-25 118.2 137 46.7
TWI23G0326 Tripterygium wilfordii HOM05D000002 ORTHO05D018019 4.8e-25 118.2 134 46.3
TWI38G0479 Tripterygium wilfordii HOM05D000002 ORTHO05D018019 1.4e-24 116.7 120 49.2
TWI38G0937 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 2.4e-24 115.9 120 49.2
RcHm_v2.0_Chr1g0365941 Rosa chinensis HOM05D000002 ORTHO05D000047 6.5e-22 107.8 78 59.0
MD10G1333400 Malus domestica HOM05D000002 ORTHO05D000047 1.3e-17 93.6 134 38.8
TWI74G0113 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 1.7e-17 93.2 69 56.5
Sabra17G0033100 Salix brachista HOM05D000018 ORTHO05D001333 2.2e-17 92.8 113 43.4
MD15G1053300 Malus domestica HOM05D000002 ORTHO05D000047 1.1e-16 90.5 134 38.1
TWI36G0078 Tripterygium wilfordii HOM05D000002 ORTHO05D000047 1.4e-16 90.1 85 51.8
MD08G1209000 Malus domestica HOM05D000103 ORTHO05D000049 1.8e-16 89.7 134 38.1
MD06G1120600 Malus domestica HOM05D000002 ORTHO05D000001 2.4e-16 89.4 134 36.6
Sabra14G0111100 Salix brachista HOM05D000352 ORTHO05D018019 2.4e-16 89.4 113 43.4
Lalb_Chr06g0171551 Lupinus albus HOM05D041862 ORTHO05D018019 1.2e-15 87.0 116 41.4
Sabra15G0063500 Salix brachista HOM05D000073 ORTHO05D000033 2.2e-14 82.8 83 49.4
Sabra04G0104600 Salix brachista HOM05D000719 ORTHO05D018019 6.5e-14 81.3 86 46.5
TWI36G0427 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 9.4e-13 77.4 107 41.1
MD14G1033300 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-12 77.0 63 60.3
RcHm_v2.0_Chr7g0192331 Rosa chinensis HOM05D000002 ORTHO05D000047 2.1e-12 76.3 49 65.3
MD01G1096500 Malus domestica HOM05D000002 ORTHO05D000001 2.6e-10 69.3 48 54.2
MD10G1237700 Malus domestica HOM05D000002 ORTHO05D000047 3.3e-10 68.9 126 34.1
Sabra13G0084300 Salix brachista HOM05D000005 ORTHO05D000012 2.2e-09 66.2 35 74.3
Migut.C00077 Erythranthe guttata HOM05D000002 ORTHO05D000047 3.7e-09 65.5 63 46.0
RcHm_v2.0_Chr7g0231721 Rosa chinensis HOM05D000002 ORTHO05D018019 4.8e-09 65.1 56 58.9
Sabra17G0035400 Salix brachista HOM05D000018 ORTHO05D001333 6.3e-09 64.7 78 48.7
COL.COLO4_11287 Corchorus olitorius HOM05D000028 ORTHO05D000701 2.0e-07 59.7 113 33.6
SEGI_41209 Sequoiadendron giganteum HOM05D001800 ORTHO05D000047 5.9e-07 58.2 131 30.5
SEGI_35175 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 7.7e-07 57.8 125 30.4
MD11G1102200 Malus domestica HOM05D000002 ORTHO05D018019 1.7e-06 56.6 97 38.1
COL.COLO4_38576 Corchorus olitorius HOM05D000028 ORTHO05D044687 5.0e-06 55.1 30 63.3
SEGI_17012 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.0e-06 55.1 104 33.7
SEGI_41565 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.0e-06 55.1 116 31.0
SEGI_10748 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 6.5e-06 54.7 118 31.4
SEGI_03840 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 8.5e-06 54.3 104 32.7


User provided reference genes

Program Settings