Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.5e-126 456.1 217 100.0
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 8.5e-125 450.3 217 98.6
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 4.2e-124 448.0 217 98.2
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 5.3e-111 404.4 266 77.1
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 6.1e-107 391.0 266 73.7
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 6.3e-104 380.9 266 72.2
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 6.3e-104 380.9 266 72.2
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 9.4e-100 367.1 266 67.7
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 5.7e-97 357.8 266 67.3
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.3e-96 356.7 270 65.6
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.0e-90 337.0 266 61.7
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.4e-90 336.7 266 61.7
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.0e-90 335.1 266 61.7
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 2.2e-88 329.3 266 60.5
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 2.9e-88 328.9 270 60.0
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 4.1e-87 325.1 266 58.6
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.2e-86 323.6 266 61.7
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 7.8e-86 320.9 266 59.4
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 8.6e-85 317.4 266 60.9
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.1e-84 317.0 266 59.8
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 1.9e-84 316.2 266 58.6
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 4.3e-84 315.1 334 50.6
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 4.3e-84 315.1 266 57.1
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 7.3e-84 314.3 266 57.5
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 9.5e-84 313.9 266 58.3
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 9.5e-84 313.9 266 59.4
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 9.5e-84 313.9 266 58.3
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.2e-83 313.5 266 58.3
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.6e-83 313.2 265 58.1
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 1.6e-83 313.2 265 58.1
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.6e-83 313.2 265 58.5
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 4.7e-83 311.6 266 57.5
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 8.0e-83 310.8 266 57.9
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.4e-82 310.1 266 58.3
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.8e-82 309.7 266 58.3
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 3.1e-82 308.9 266 56.8
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 4.0e-82 308.5 266 57.5
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.2e-82 308.1 266 56.8
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.2e-82 308.1 266 56.8
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 5.2e-82 308.1 266 58.3
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 8.9e-82 307.4 266 57.5
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.2e-81 307.0 266 57.1
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 2.0e-81 306.2 266 57.1
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 4.4e-81 305.1 266 56.8
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 4.4e-81 305.1 266 58.3
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 4.4e-81 305.1 266 57.5
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 9.8e-81 303.9 266 57.5
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.3e-80 303.5 266 57.1
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 3.7e-80 302.0 266 56.4
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 4.9e-80 301.6 266 56.4
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 6.4e-80 301.2 266 57.5
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 8.3e-80 300.8 267 55.1
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.1e-79 300.4 266 55.3
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.9e-79 299.7 266 56.4
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 2.4e-79 299.3 266 57.9
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 4.1e-79 298.5 266 56.4
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 4.1e-79 298.5 266 56.4
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 4.1e-79 298.5 265 57.0
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 5.4e-79 298.1 266 56.4
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 9.2e-79 297.4 266 54.5
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 1.6e-78 296.6 265 56.6
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 2.7e-78 295.8 264 56.1
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 4.6e-78 295.0 266 55.6
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 4.6e-78 295.0 266 54.5
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 4.6e-78 295.0 266 55.3
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 1.0e-77 293.9 266 55.6
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 3.0e-77 292.4 264 54.9
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 6.6e-77 291.2 264 54.9
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 6.6e-77 291.2 266 55.6
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.5e-76 290.0 266 54.9
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 2.5e-76 289.3 264 54.5
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 2.5e-76 289.3 264 54.5
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 3.3e-76 288.9 264 54.9
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 7.3e-76 287.7 267 53.9
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 9.5e-76 287.3 265 55.1
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 2.8e-75 285.8 252 56.3
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 1.8e-74 283.1 264 54.2
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.3e-74 282.7 264 53.4
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 2.3e-74 282.7 264 54.2
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 6.8e-74 281.2 296 49.7
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 8.9e-74 280.8 238 58.8
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.2e-73 280.4 264 54.2
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 3.4e-73 278.9 264 53.8
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.4e-73 278.9 266 52.3
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 3.7e-72 275.4 266 51.5
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.9e-71 273.1 266 52.3
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 7.1e-71 271.2 264 50.4
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.2e-70 270.4 266 49.6
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.6e-70 268.5 228 57.5
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.5e-68 263.5 266 48.1
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.9e-68 263.1 259 50.2
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 5.6e-68 261.5 258 52.3
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 6.8e-66 254.6 267 51.7
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.7e-61 240.0 382 37.4
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 6.9e-58 228.0 187 58.3
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 1.1e-55 220.7 236 49.6
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 7.1e-55 218.0 239 50.6
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.1e-52 210.7 124 78.2
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.4e-47 193.0 268 38.1
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 8.7e-45 184.5 212 43.4
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 3.6e-43 179.1 264 38.6
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 1.3e-40 170.6 268 35.8
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.3e-40 170.6 269 35.3
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.8e-40 169.1 208 44.7
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.6e-38 163.7 85 88.2
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 2.8e-35 152.9 121 60.3
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 6.2e-35 151.8 76 90.8
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 9.0e-34 147.9 82 81.7
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 4.2e-31 139.0 76 78.9
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 2.5e-28 129.8 77 72.7
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 7.4e-28 128.3 125 52.0
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 8.5e-24 114.8 144 45.1
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 3.2e-23 112.8 233 32.2
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 7.2e-23 111.7 65 78.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 5.7e-20 102.1 69 66.7
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.3e-12 76.3 83 44.6
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 2.8e-11 73.2 71 50.7
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.6e-06 56.2 53 50.9
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 6.1e-06 55.5 35 65.7
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 6.1e-06 55.5 35 65.7
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 6.1e-06 55.5 62 45.2


User provided reference genes

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