Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.5e-98 362.8 184 100.0
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 4.1e-88 328.2 168 98.2
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 6.6e-78 294.3 171 86.5
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.6e-78 294.3 171 86.5
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-77 292.4 171 86.5
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.3e-77 291.6 171 86.0
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.3e-77 290.8 171 86.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.4e-67 260.0 170 74.1
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 6.8e-67 257.7 172 74.4
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.4e-64 250.0 168 72.6
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.3e-62 242.7 167 70.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 3.0e-62 242.3 169 69.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 8.7e-62 240.7 171 70.2
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.1e-61 240.4 170 69.4
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 5.6e-61 238.0 165 67.9
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 7.3e-61 237.7 172 67.4
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.3e-60 236.9 170 68.8
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.6e-60 236.5 170 67.1
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.1e-59 233.8 169 68.0
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.8e-59 233.0 172 65.7
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 9.0e-59 230.7 171 67.8
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 9.0e-59 230.7 171 67.3
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.5e-58 229.9 176 64.2
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 7.6e-58 227.6 172 65.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 7.6e-58 227.6 169 65.7
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 9.9e-58 227.3 178 62.4
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.7e-57 226.5 172 64.0
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 2.2e-57 226.1 169 65.7
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.9e-57 225.7 172 64.0
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 8.4e-57 224.2 171 66.1
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.4e-57 224.2 168 64.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.9e-56 223.0 169 65.1
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.9e-56 223.0 169 65.1
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.2e-56 222.2 167 65.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.2e-56 221.9 171 65.5
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 4.2e-56 221.9 177 61.6
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.2e-56 221.9 168 64.3
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.6e-55 219.9 170 64.1
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 2.1e-55 219.5 177 60.5
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-55 219.2 172 64.0
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.7e-55 219.2 177 61.6
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.7e-55 219.2 170 61.8
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 6.0e-55 218.0 181 59.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 6.0e-55 218.0 168 63.1
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.0e-54 217.2 181 59.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.0e-54 217.2 177 60.5
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 1.3e-54 216.9 170 62.4
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.7e-54 216.5 182 61.5
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.3e-54 216.1 177 61.6
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 2.3e-54 216.1 171 62.6
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 3.0e-54 215.7 158 67.1
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.0e-54 215.7 172 63.4
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 3.0e-54 215.7 172 63.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 3.9e-54 215.3 170 64.7
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.9e-54 215.3 167 62.9
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 8.7e-54 214.2 168 60.7
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.5e-53 212.6 170 62.4
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 4.3e-53 211.8 169 61.5
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.3e-53 211.8 171 63.2
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 4.3e-53 211.8 170 58.8
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 7.3e-53 211.1 170 59.4
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 9.6e-53 210.7 169 59.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.6e-52 209.9 171 60.2
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.8e-52 209.1 164 61.6
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.8e-52 209.1 186 59.1
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.6e-52 208.8 170 60.0
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.6e-52 208.8 170 61.2
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 4.8e-52 208.4 171 62.0
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 6.2e-52 208.0 171 59.6
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 6.2e-52 208.0 171 60.8
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 6.2e-52 208.0 171 59.6
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 6.2e-52 208.0 180 59.4
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 8.1e-52 207.6 171 60.2
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.1e-51 207.2 200 54.5
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.4e-51 206.8 170 60.0
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.4e-51 206.8 171 61.4
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 3.1e-51 205.7 170 58.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 3.1e-51 205.7 170 58.8
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-51 205.7 158 63.3
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 4.0e-51 205.3 170 58.8
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 5.3e-51 204.9 175 57.7
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 5.3e-51 204.9 177 56.5
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.0e-50 203.0 170 57.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 2.0e-50 203.0 171 59.1
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 3.4e-50 202.2 170 58.8
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 4.5e-50 201.8 170 57.1
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 7.6e-50 201.1 170 56.5
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 9.9e-50 200.7 170 57.6
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 2.9e-49 199.1 170 57.6
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 2.9e-49 199.1 170 57.6
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 4.9e-49 198.4 170 55.9
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.9e-48 196.4 174 57.5
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 3.2e-48 195.7 170 56.5
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 4.2e-48 195.3 170 54.7
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 5.4e-48 194.9 168 56.5
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 7.1e-48 194.5 174 56.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.6e-47 193.4 200 50.5
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 7.9e-47 191.0 170 54.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 8.7e-46 187.6 177 54.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 9.6e-45 184.1 166 51.8
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 3.1e-43 179.1 201 46.8
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 9.0e-43 177.6 158 55.7
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.3e-41 173.7 166 54.8
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.1e-40 170.6 158 53.8
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 4.2e-40 168.7 169 55.0
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.2e-39 167.2 181 49.2
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.3e-38 163.7 115 70.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.8e-35 153.3 133 59.4
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.8e-35 153.3 174 47.1
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-34 150.6 145 53.1
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.0e-30 137.5 107 58.9
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-29 134.0 107 60.7
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 5.7e-29 131.7 166 41.0
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 3.7e-28 129.0 167 42.5
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 3.7e-28 129.0 168 43.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.6e-26 122.9 167 41.9
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.2e-24 114.8 147 42.9
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.1e-23 113.2 106 53.8
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.8e-22 110.2 98 51.0
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.1e-19 100.9 112 48.2
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-18 97.4 88 54.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.7e-17 93.6 66 68.2
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.8e-12 76.3 55 65.5
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.3e-09 67.4 117 34.2
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.3e-09 67.4 75 49.3


User provided reference genes

Program Settings