Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260751 Rosa chinensis HOM05D001193 ORTHO05D001016 2.2e-30 134.8 61 100.0
RcHm_v2.0_Chr6g0260141 Rosa chinensis HOM05D001193 ORTHO05D001016 1.2e-28 129.0 60 95.0
RcHm_v2.0_Chr6g0260551 Rosa chinensis HOM05D001193 ORTHO05D001016 6.0e-28 126.7 60 93.3
RcHm_v2.0_Chr6g0260381 Rosa chinensis HOM05D001193 ORTHO05D001016 7.9e-28 126.3 60 93.3
FvH4_2g07340 Fragaria vesca HOM05D001193 ORTHO05D001016 3.9e-27 124.0 60 90.0
FAN20G3093 Fragaria x ananassa HOM05D001193 ORTHO05D001016 3.9e-27 124.0 60 90.0
FAN24G2224 Fragaria x ananassa HOM05D001193 ORTHO05D001016 3.9e-27 124.0 60 90.0
RcHm_v2.0_Chr6g0260651 Rosa chinensis HOM05D001193 ORTHO05D001016 1.1e-26 122.5 60 90.0
RcHm_v2.0_Chr2g0124381 Rosa chinensis HOM05D001193 ORTHO05D001016 1.5e-26 122.1 60 90.0
RcHm_v2.0_Chr6g0260061 Rosa chinensis HOM05D001193 ORTHO05D001016 7.4e-26 119.8 60 90.0
RcHm_v2.0_Chr6g0260351 Rosa chinensis HOM05D001193 ORTHO05D001016 2.1e-25 118.2 54 94.4
RcHm_v2.0_Chr6g0260601 Rosa chinensis HOM05D001193 ORTHO05D001016 3.7e-25 117.5 60 88.3
Prupe.8G112800 Prunus persica HOM05D001193 ORTHO05D001016 1.4e-24 115.5 60 83.3
CiPaw.05G058600 Carya illinoinensis HOM05D001193 ORTHO05D001016 1.7e-22 108.6 60 76.7
Cfa004945 Carpinus fangiana HOM05D001193 ORTHO05D001016 5.0e-22 107.1 60 75.0
TAR623G0463 Trochodendron aralioides HOM05D001193 ORTHO05D001016 2.5e-21 104.8 60 73.3
CANSAT25G0687 Cannabis sativa HOM05D001193 ORTHO05D001016 3.2e-21 104.4 60 80.0
Ciclev10028950m.g Citrus clementina HOM05D001193 ORTHO05D001016 3.2e-21 104.4 60 76.7
Atru.chr5.2874 Acer truncatum HOM05D001193 ORTHO05D001016 6.7e-19 96.7 60 70.0
Lalb_Chr19g0138501 Lupinus albus HOM05D001193 ORTHO05D001016 6.7e-19 96.7 60 66.7
Potri.009G108900 Populus trichocarpa HOM05D001193 ORTHO05D001016 6.7e-19 96.7 60 70.0
CSS0046353 Camellia sinensis var. sinensis HOM05D001193 ORTHO05D001016 8.7e-19 96.3 60 65.0
AUR62011399 Chenopodium quinoa HOM05D001193 ORTHO05D001016 2.5e-18 94.7 60 68.3
arahy.Tifrunner.gnm1.ann1.EFX8YV Arachis hypogaea HOM05D001193 ORTHO05D001016 3.3e-18 94.4 60 68.3
arahy.Tifrunner.gnm1.ann1.PM0FQ0 Arachis hypogaea HOM05D001193 ORTHO05D001016 3.3e-18 94.4 60 68.3
Manes.15G145500 Manihot esculenta HOM05D001193 ORTHO05D001016 3.3e-18 94.4 60 66.7
CsaV3_7G010100 Cucumis sativus L. HOM05D001193 ORTHO05D001016 5.7e-18 93.6 60 66.7
ClCG02G005530 Citrullus lanatus HOM05D001193 ORTHO05D001016 9.7e-18 92.8 60 63.3
Phvul.001G085900 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 9.7e-18 92.8 60 66.7
AUR62016659 Chenopodium quinoa HOM05D001193 ORTHO05D001016 2.2e-17 91.7 60 68.3
Oeu003706.1 Olea europaea HOM05D001193 ORTHO05D001016 2.2e-17 91.7 60 61.7
Dinv23579 Davidia involucrata HOM05D001193 ORTHO05D001016 2.8e-17 91.3 55 69.1
Sabra09G0083200 Salix brachista HOM05D001193 ORTHO05D001016 2.8e-17 91.3 60 68.3
EL10Ac9g21793 Beta vulgaris HOM05D001193 ORTHO05D001016 4.8e-17 90.5 61 63.9
Migut.N01211 Erythranthe guttata HOM05D001193 ORTHO05D001016 4.8e-17 90.5 60 61.7
Nn2g15762 Nelumbo nucifera HOM05D001193 ORTHO05D001016 6.3e-17 90.1 60 65.0
Ca_20816_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 8.2e-17 89.7 60 65.0
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 1.1e-16 89.4 60 61.7
Thhalv10011694m.g Eutrema salsugineum HOM05D001193 ORTHO05D001016 1.4e-16 89.0 60 68.3
Glyma.12G048400 Glycine max HOM05D001193 ORTHO05D001016 1.4e-16 89.0 60 63.3
Oeu010569.1 Olea europaea HOM05D001193 ORTHO05D001016 2.4e-16 88.2 60 58.3
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 4.1e-16 87.4 60 60.0
CARHR039470 Cardamine hirsuta HOM05D001193 ORTHO05D001016 5.3e-16 87.0 60 66.7
Lj3g0025270 Lotus japonicus HOM05D001193 ORTHO05D001016 6.9e-16 86.7 60 58.3
Sp1g36300 Schrenkiella parvula HOM05D001193 ORTHO05D001016 6.9e-16 86.7 60 63.3
AT1G49470 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 9.0e-16 86.3 60 65.0
Medtr4g068340 Medicago truncatula HOM05D001193 ORTHO05D001016 9.0e-16 86.3 60 61.7
C08p04160 Brassica napus HOM05D001193 ORTHO05D001016 1.2e-15 85.9 60 63.3
Sed0025947 Sechium edule HOM05D001193 ORTHO05D001016 1.5e-15 85.5 60 58.3
Glyma.11G123900 Glycine max HOM05D001193 ORTHO05D001016 2.0e-15 85.1 61 62.3
Aqoxy7G01067 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 2.6e-15 84.7 60 63.3
BcaC07g37049 Brassica carinata HOM05D001193 ORTHO05D001016 2.6e-15 84.7 60 63.3
BolC8t47218H Brassica oleracea HOM05D001193 ORTHO05D001016 2.6e-15 84.7 60 63.3
TWI75G0428 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 2.6e-15 84.7 60 61.7
Ah.01g019880 Amaranthus hybridus HOM05D001193 ORTHO05D001016 3.4e-15 84.3 60 60.0
BcaB04g17337 Brassica carinata HOM05D001193 ORTHO05D001016 3.4e-15 84.3 60 61.7
A08p03930 Brassica napus HOM05D001193 ORTHO05D001016 3.4e-15 84.3 60 61.7
BraA08t32422Z Brassica rapa HOM05D001193 ORTHO05D001016 3.4e-15 84.3 60 61.7
PGR042G2327 Punica granatum HOM05D001193 ORTHO05D001016 3.4e-15 84.3 60 55.0
Cpa.g.sc62.79 Carica papaya HOM05D001193 ORTHO05D001016 4.5e-15 84.0 61 59.0
AL1G56790 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 1.0e-14 82.8 58 62.1
Eucgr.G00509 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.0e-14 82.8 60 58.3
Eucgr.G01533 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.0e-14 82.8 60 58.3
PSO384G3666 Papaver somniferum HOM05D001193 ORTHO05D001016 1.0e-14 82.8 61 60.7
Psat7g208040 Pisum sativum HOM05D001193 ORTHO05D001016 1.0e-14 82.8 60 61.7
MBI19_g17434_MAGBIO Magnolia biondii HOM05D001193 ORTHO05D001016 1.3e-14 82.4 60 60.0
Carub.0001s3865 Capsella rubella HOM05D001193 ORTHO05D001016 2.2e-14 81.6 60 60.0
ECA236G2558 Erigeron canadensis HOM05D001193 ORTHO05D001016 2.2e-14 81.6 60 58.3
TWI79G0515 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 2.2e-14 81.6 60 58.3
PSO339G4892 Papaver somniferum HOM05D001193 ORTHO05D001016 2.9e-14 81.3 61 57.4
SGA_v2.0_scaffold55G19827 Striga asiatica HOM05D001193 ORTHO05D001016 3.8e-14 80.9 60 56.7
TPR.G10223 Trifolium pratense HOM05D001193 ORTHO05D001016 3.8e-14 80.9 60 61.7
CAN.G1269.6 Capsicum annuum HOM05D001193 ORTHO05D001016 6.5e-14 80.1 60 51.7
DCAR_029009 Daucus carota HOM05D001193 ORTHO05D001016 6.5e-14 80.1 60 58.3
Nitab4.5_0002543g0010 Nicotiana tabacum HOM05D001193 ORTHO05D001016 1.4e-13 79.0 60 50.0
Nitab4.5_0005466g0020 Nicotiana tabacum HOM05D001193 ORTHO05D001016 1.4e-13 79.0 60 50.0
Lsat_1_v5_gn_7_88001 Lactuca sativa HOM05D001193 ORTHO05D001016 1.9e-13 78.6 60 56.7
Aa31LG10G4530 Aethionema arabicum HOM05D001193 ORTHO05D001016 3.2e-13 77.8 58 60.3
THA.LOC104808456 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 4.2e-13 77.4 60 58.3
QL11p039205 Quercus lobata HOM05D001193 ORTHO05D001016 7.2e-13 76.6 40 80.0
Os08g0462900 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 9.4e-13 76.3 60 51.7
Solyc10g050430.1 Solanum lycopersicum HOM05D001193 ORTHO05D001016 1.2e-12 75.9 61 50.8
Sopen10g022080 Solanum pennellii HOM05D001193 ORTHO05D001016 1.2e-12 75.9 61 50.8
HanXRQChr16g0506061 Helianthus annuus HOM05D001193 ORTHO05D001016 1.4e-11 72.4 60 55.0
Peaxi162Scf00003g02218 Petunia axillaris HOM05D001193 ORTHO05D001016 8.8e-11 69.7 55 52.7
PGSC0003DMG400006222 Solanum tuberosum HOM05D001193 ORTHO05D001016 8.8e-11 69.7 61 47.5
Pp3c1_25080 Physcomitrium patens HOM05D001193 ORTHO05D001016 9.7e-10 66.2 60 50.0
AUR62019199 Chenopodium quinoa HOM05D001193 ORTHO05D001016 1.8e-08 62.0 60 46.7
FAN15G2329 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.4e-08 61.6 29 82.8
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 3.1e-08 61.2 60 43.3
Pp3c5_8910 Physcomitrium patens HOM05D001193 ORTHO05D001016 3.1e-08 61.2 60 43.3
AT1G55240 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 5.3e-08 60.5 60 45.0
Actinidia18151 Actinidia chinensis HOM05D001193 ORTHO05D001016 1.2e-07 59.3 60 43.3
BcaB04g16971 Brassica carinata HOM05D001193 ORTHO05D001016 2.0e-07 58.5 60 45.0
BcaC01g01500 Brassica carinata HOM05D001193 ORTHO05D001016 2.0e-07 58.5 60 45.0
BcaC08g44183 Brassica carinata HOM05D001193 ORTHO05D001016 2.0e-07 58.5 60 46.7
C06p15870 Brassica napus HOM05D001193 ORTHO05D001016 2.0e-07 58.5 60 46.7
BolC6t36778H Brassica oleracea HOM05D001193 ORTHO05D001016 2.0e-07 58.5 60 46.7
FAN16G0935 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.0e-07 58.5 60 43.3
Mapoly0016s0059 Marchantia polymorpha HOM05D001193 ORTHO05D001016 2.0e-07 58.5 60 45.0
FvH4_3g44810 Fragaria vesca HOM05D001193 ORTHO05D001016 2.6e-07 58.2 60 43.3
FAN11G3039 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.6e-07 58.2 60 43.3
FAN21G3972 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.6e-07 58.2 60 43.3
FAN25G1836 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.6e-07 58.2 60 43.3
ATR0829G135 Amborella trichopoda HOM05D001193 ORTHO05D001016 3.4e-07 57.8 60 40.0
vmacro14226 Vaccinium macrocarpon HOM05D001193 ORTHO05D001016 3.4e-07 57.8 60 40.0
A08p00790 Brassica napus HOM05D001193 ORTHO05D001016 4.5e-07 57.4 60 45.0
BraA08t32136Z Brassica rapa HOM05D001193 ORTHO05D001016 4.5e-07 57.4 60 45.0
Actinidia14752 Actinidia chinensis HOM05D001193 ORTHO05D001016 5.9e-07 57.0 60 40.0
A05p17620 Brassica napus HOM05D001193 ORTHO05D001016 5.9e-07 57.0 60 45.0
C03p92540 Brassica napus HOM05D001193 ORTHO05D001016 5.9e-07 57.0 60 45.0
BolC3t21560H Brassica oleracea HOM05D001193 ORTHO05D001016 5.9e-07 57.0 60 45.0
BraA05t20653Z Brassica rapa HOM05D001193 ORTHO05D001016 5.9e-07 57.0 60 45.0
CARHR044890 Cardamine hirsuta HOM05D001193 ORTHO05D001016 5.9e-07 57.0 60 43.3
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 5.9e-07 57.0 45 48.9
AT1G55230 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 7.7e-07 56.6 60 45.0
Ca_22487_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 7.7e-07 56.6 60 43.3
Thhalv10011951m.g Eutrema salsugineum HOM05D001193 ORTHO05D001016 7.7e-07 56.6 60 43.3
Psat4g110560 Pisum sativum HOM05D001193 ORTHO05D001016 7.7e-07 56.6 60 45.0
Cc08_g04370 Coffea canephora HOM05D001193 ORTHO05D001016 1.0e-06 56.2 60 45.0
MD03G1010400 Malus domestica HOM05D001193 ORTHO05D001016 1.0e-06 56.2 60 45.0
Medtr2g021690 Medicago truncatula HOM05D001193 ORTHO05D001016 1.0e-06 56.2 60 43.3
BcaC01g01479 Brassica carinata HOM05D001193 ORTHO05D001016 1.3e-06 55.8 60 45.0
C03p92480 Brassica napus HOM05D001193 ORTHO05D001016 1.3e-06 55.8 60 45.0
BolC3t21559H Brassica oleracea HOM05D001193 ORTHO05D001016 1.3e-06 55.8 60 45.0
RcHm_v2.0_Chr5g0081481 Rosa chinensis HOM05D001193 ORTHO05D001016 1.3e-06 55.8 60 45.0
HPP92_028665 Vanilla planifolia HOM05D001193 ORTHO05D001016 1.3e-06 55.8 60 45.0
AL1G63280 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 1.7e-06 55.5 60 41.7
THA.LOC104822627 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 1.7e-06 55.5 60 43.3
Duzib150G1262 Durio zibethinus HOM05D001193 ORTHO05D001016 2.2e-06 55.1 60 43.3
MD11G1012300 Malus domestica HOM05D001193 ORTHO05D001016 2.2e-06 55.1 60 43.3
Ciclev10016008m.g Citrus clementina HOM05D001193 ORTHO05D001016 2.9e-06 54.7 60 43.3
Glyma.16G104000 Glycine max HOM05D001193 ORTHO05D001016 2.9e-06 54.7 60 41.7
Lj4g0010733 Lotus japonicus HOM05D001193 ORTHO05D001016 2.9e-06 54.7 61 45.9
Rhsim11G0026800 Rhododendron simsii HOM05D001193 ORTHO05D001016 2.9e-06 54.7 60 41.7
SEGI_08849 Sequoiadendron giganteum HOM05D001193 ORTHO05D001016 2.9e-06 54.7 60 43.3
Cc01_g01620 Coffea canephora HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 41.7
Duzib168G1939 Durio zibethinus HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 41.7
Manes.03G088503 Manihot esculenta HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 43.3
Manes.03G088519 Manihot esculenta HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 43.3
Psat1g184320 Pisum sativum HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 41.7
THA.LOC104810352 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 43.3
TPR.G14197 Trifolium pratense HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 41.7
TWI60G0171 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 43.3
unitig_0.g2216 Utricularia gibba HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 43.3
vmacro00071 Vaccinium macrocarpon HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 40.0
VMungo0251G1403 Vigna mungo HOM05D001193 ORTHO05D001016 3.8e-06 54.3 60 41.7
AL1G63270 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 5.0e-06 53.9 60 43.3
CARHR193010 Cardamine hirsuta HOM05D001193 ORTHO05D001016 5.0e-06 53.9 60 45.0
Manes.15G105200 Manihot esculenta HOM05D001193 ORTHO05D001016 5.0e-06 53.9 60 43.3
SalBow6G6108 Salvia bowleyana HOM05D001193 ORTHO05D001016 5.0e-06 53.9 60 43.3
TPR.G31321 Trifolium pratense HOM05D001193 ORTHO05D001016 5.0e-06 53.9 60 43.3
EL10Ac4g10349 Beta vulgaris HOM05D001193 ORTHO05D001016 6.5e-06 53.5 60 43.3
CDE05G2126 Ceratophyllum demersum HOM05D001193 ORTHO05D001016 6.5e-06 53.5 60 45.0
Cc01_g01570 Coffea canephora HOM05D001193 ORTHO05D001016 6.5e-06 53.5 60 40.0
CsaV3_3G001120 Cucumis sativus L. HOM05D001193 ORTHO05D001016 6.5e-06 53.5 60 43.3
Phvul.003G272800 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 6.5e-06 53.5 60 41.7
Psat2g141400 Pisum sativum HOM05D001193 ORTHO05D001016 6.5e-06 53.5 60 43.3
Potri.003G216500 Populus trichocarpa HOM05D001193 ORTHO05D001016 6.5e-06 53.5 60 41.7
CAN.G158.1 Capsicum annuum HOM05D001193 ORTHO05D001016 8.5e-06 53.1 60 43.3
AUR62019198 Chenopodium quinoa HOM05D000036 ORTHO05D001016 8.5e-06 53.1 60 38.3
Cc09_g09630 Coffea canephora HOM05D001193 ORTHO05D001016 8.5e-06 53.1 60 43.3
Lalb_Chr18g0056051 Lupinus albus HOM05D001193 ORTHO05D001016 8.5e-06 53.1 60 45.0
TPR.G14191 Trifolium pratense HOM05D001193 ORTHO05D001016 8.5e-06 53.1 60 40.0
TWI60G0004 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 8.5e-06 53.1 60 41.7
GSVIVG01036879001 Vitis vinifera HOM05D001193 ORTHO05D001016 8.5e-06 53.1 60 40.0


User provided reference genes

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