Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260601 Rosa chinensis HOM05D001193 ORTHO05D001016 3.7e-82 308.1 155 100.0
RcHm_v2.0_Chr6g0260651 Rosa chinensis HOM05D001193 ORTHO05D001016 6.2e-45 184.5 122 77.0
FvH4_2g07340 Fragaria vesca HOM05D001193 ORTHO05D001016 4.0e-44 181.8 122 73.0
FAN24G2224 Fragaria x ananassa HOM05D001193 ORTHO05D001016 5.3e-44 181.4 122 73.0
FAN20G3093 Fragaria x ananassa HOM05D001193 ORTHO05D001016 6.9e-44 181.0 122 73.0
RcHm_v2.0_Chr2g0124381 Rosa chinensis HOM05D001193 ORTHO05D001016 1.3e-42 176.8 122 73.8
Prupe.8G112800 Prunus persica HOM05D001193 ORTHO05D001016 2.7e-40 169.1 122 68.0
Cfa004945 Carpinus fangiana HOM05D001193 ORTHO05D001016 6.2e-37 157.9 102 70.6
CiPaw.05G058600 Carya illinoinensis HOM05D001193 ORTHO05D001016 3.1e-36 155.6 102 70.6
CANSAT25G0687 Cannabis sativa HOM05D001193 ORTHO05D001016 1.2e-35 153.7 102 72.5
Ciclev10028950m.g Citrus clementina HOM05D001193 ORTHO05D001016 7.6e-35 151.0 102 68.6
Manes.15G145500 Manihot esculenta HOM05D001193 ORTHO05D001016 9.3e-33 144.1 102 64.7
TAR623G0463 Trochodendron aralioides HOM05D001193 ORTHO05D001016 9.3e-33 144.1 108 63.0
Dinv23579 Davidia involucrata HOM05D001193 ORTHO05D001016 1.2e-32 143.7 103 64.1
Potri.009G108900 Populus trichocarpa HOM05D001193 ORTHO05D001016 1.2e-32 143.7 102 66.7
Lalb_Chr19g0138501 Lupinus albus HOM05D001193 ORTHO05D001016 2.1e-32 142.9 134 53.7
CSS0046353 Camellia sinensis var. sinensis HOM05D001193 ORTHO05D001016 4.6e-32 141.7 102 63.7
AUR62011399 Chenopodium quinoa HOM05D001193 ORTHO05D001016 4.6e-32 141.7 104 64.4
Oeu003706.1 Olea europaea HOM05D001193 ORTHO05D001016 7.9e-32 141.0 102 61.8
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 1.0e-31 140.6 102 61.8
Sabra09G0083200 Salix brachista HOM05D001193 ORTHO05D001016 1.8e-31 139.8 102 65.7
Oeu010569.1 Olea europaea HOM05D001193 ORTHO05D001016 2.3e-31 139.4 102 60.8
AUR62016659 Chenopodium quinoa HOM05D001193 ORTHO05D001016 3.9e-31 138.7 104 64.4
arahy.Tifrunner.gnm1.ann1.EFX8YV Arachis hypogaea HOM05D001193 ORTHO05D001016 5.1e-31 138.3 137 52.6
arahy.Tifrunner.gnm1.ann1.PM0FQ0 Arachis hypogaea HOM05D001193 ORTHO05D001016 5.1e-31 138.3 137 52.6
CsaV3_7G010100 Cucumis sativus L. HOM05D001193 ORTHO05D001016 6.7e-31 137.9 132 56.1
Nitab4.5_0005466g0020 Nicotiana tabacum HOM05D001193 ORTHO05D001016 6.7e-31 137.9 102 59.8
Atru.chr5.2874 Acer truncatum HOM05D001193 ORTHO05D001016 1.1e-30 137.1 135 54.8
Cpa.g.sc62.79 Carica papaya HOM05D001193 ORTHO05D001016 1.9e-30 136.3 132 52.3
Ca_20816_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 1.9e-30 136.3 132 52.3
Phvul.001G085900 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 3.3e-30 135.6 134 53.0
EL10Ac9g21793 Beta vulgaris HOM05D001193 ORTHO05D001016 7.4e-30 134.4 132 51.5
Glyma.12G048400 Glycine max HOM05D001193 ORTHO05D001016 1.3e-29 133.7 134 52.2
Migut.N01211 Erythranthe guttata HOM05D001193 ORTHO05D001016 1.6e-29 133.3 131 49.6
Nitab4.5_0002543g0010 Nicotiana tabacum HOM05D001193 ORTHO05D001016 1.6e-29 133.3 96 61.5
TWI75G0428 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 1.6e-29 133.3 102 61.8
Lj3g0025270 Lotus japonicus HOM05D001193 ORTHO05D001016 2.8e-29 132.5 134 50.0
CAN.G1269.6 Capsicum annuum HOM05D001193 ORTHO05D001016 1.1e-28 130.6 102 56.9
Nn2g15762 Nelumbo nucifera HOM05D001193 ORTHO05D001016 1.1e-28 130.6 131 53.4
Sopen10g022080 Solanum pennellii HOM05D001193 ORTHO05D001016 1.1e-28 130.6 103 57.3
ClCG02G005530 Citrullus lanatus HOM05D001193 ORTHO05D001016 1.4e-28 130.2 102 59.8
Medtr4g068340 Medicago truncatula HOM05D001193 ORTHO05D001016 1.4e-28 130.2 132 50.8
TWI79G0515 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 1.4e-28 130.2 102 60.8
ECA236G2558 Erigeron canadensis HOM05D001193 ORTHO05D001016 5.3e-28 128.3 102 57.8
Solyc10g050430.1 Solanum lycopersicum HOM05D001193 ORTHO05D001016 5.3e-28 128.3 103 56.3
Ah.01g019880 Amaranthus hybridus HOM05D001193 ORTHO05D001016 6.9e-28 127.9 131 51.1
Eucgr.G00509 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.2e-27 127.1 102 57.8
Eucgr.G01533 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.2e-27 127.1 102 57.8
Sed0025947 Sechium edule HOM05D001193 ORTHO05D001016 1.2e-27 127.1 102 58.8
PGSC0003DMG400006222 Solanum tuberosum HOM05D001193 ORTHO05D001016 1.5e-27 126.7 103 56.3
Glyma.11G123900 Glycine max HOM05D001193 ORTHO05D001016 2.0e-27 126.3 135 52.6
RcHm_v2.0_Chr6g0260141 Rosa chinensis HOM05D001193 ORTHO05D001016 2.6e-27 125.9 69 88.4
Aqoxy7G01067 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 3.4e-27 125.6 97 61.9
DCAR_029009 Daucus carota HOM05D001193 ORTHO05D001016 3.4e-27 125.6 102 56.9
PGR042G2327 Punica granatum HOM05D001193 ORTHO05D001016 4.5e-27 125.2 132 47.7
TPR.G10223 Trifolium pratense HOM05D001193 ORTHO05D001016 4.5e-27 125.2 134 50.0
Psat7g208040 Pisum sativum HOM05D001193 ORTHO05D001016 5.8e-27 124.8 134 50.7
Lsat_1_v5_gn_7_88001 Lactuca sativa HOM05D001193 ORTHO05D001016 1.0e-26 124.0 102 56.9
HanXRQChr16g0506061 Helianthus annuus HOM05D001193 ORTHO05D001016 1.1e-25 120.6 102 56.9
PSO384G3666 Papaver somniferum HOM05D001193 ORTHO05D001016 1.1e-25 120.6 103 56.3
RcHm_v2.0_Chr6g0260381 Rosa chinensis HOM05D001193 ORTHO05D001016 1.9e-25 119.8 64 89.1
PSO339G4892 Papaver somniferum HOM05D001193 ORTHO05D001016 2.5e-25 119.4 103 56.3
Sp1g36300 Schrenkiella parvula HOM05D001193 ORTHO05D001016 3.2e-25 119.0 135 50.4
FAN15G2329 Fragaria x ananassa HOM05D001193 ORTHO05D001016 5.5e-25 118.2 91 65.9
RcHm_v2.0_Chr6g0260061 Rosa chinensis HOM05D001193 ORTHO05D001016 5.5e-25 118.2 69 84.1
C08p04160 Brassica napus HOM05D001193 ORTHO05D001016 7.1e-25 117.9 133 50.4
BcaC07g37049 Brassica carinata HOM05D001193 ORTHO05D001016 1.6e-24 116.7 133 50.4
BolC8t47218H Brassica oleracea HOM05D001193 ORTHO05D001016 1.6e-24 116.7 133 50.4
Thhalv10011694m.g Eutrema salsugineum HOM05D001193 ORTHO05D001016 1.6e-24 116.7 133 52.6
MBI19_g17434_MAGBIO Magnolia biondii HOM05D001193 ORTHO05D001016 1.6e-24 116.7 97 58.8
RcHm_v2.0_Chr6g0260551 Rosa chinensis HOM05D001193 ORTHO05D001016 1.6e-24 116.7 63 87.3
Os08g0462900 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 3.5e-24 115.5 97 54.6
A08p03930 Brassica napus HOM05D001193 ORTHO05D001016 6.0e-24 114.8 133 49.6
BraA08t32422Z Brassica rapa HOM05D001193 ORTHO05D001016 6.0e-24 114.8 133 49.6
RcHm_v2.0_Chr6g0260751 Rosa chinensis HOM05D001193 ORTHO05D001016 7.9e-24 114.4 60 88.3
THA.LOC104808456 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 7.9e-24 114.4 134 47.0
BcaB04g17337 Brassica carinata HOM05D001193 ORTHO05D001016 1.0e-23 114.0 133 49.6
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.0e-23 114.0 132 45.5
CARHR039470 Cardamine hirsuta HOM05D001193 ORTHO05D001016 1.8e-23 113.2 133 51.1
Cc02_g18200 Coffea canephora HOM05D001193 ORTHO05D001016 1.8e-23 113.2 132 43.9
Aa31LG10G4530 Aethionema arabicum HOM05D001193 ORTHO05D001016 2.5e-22 109.4 135 48.9
AT1G49470 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 3.3e-22 109.0 133 48.9
SGA_v2.0_scaffold55G19827 Striga asiatica HOM05D001193 ORTHO05D001016 3.3e-22 109.0 96 53.1
RcHm_v2.0_Chr6g0260351 Rosa chinensis HOM05D001193 ORTHO05D001016 5.7e-22 108.2 54 90.7
AL1G56790 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 4.8e-21 105.1 133 46.6
Carub.0001s3865 Capsella rubella HOM05D001193 ORTHO05D001016 1.1e-20 104.0 133 45.9
Eucgr.F03330 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.6e-13 80.1 144 36.8
Atru.chr13.1399 Acer truncatum HOM05D001193 ORTHO05D001016 8.2e-13 77.8 69 58.0
Peaxi162Scf00003g02218 Petunia axillaris HOM05D001193 ORTHO05D001016 2.6e-11 72.8 107 39.3
QL11p039205 Quercus lobata HOM05D001193 ORTHO05D001016 4.5e-11 72.0 166 32.5
Pp3c1_25080 Physcomitrium patens HOM05D001193 ORTHO05D001016 6.5e-10 68.2 105 36.2
FAN16G0935 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.7e-08 62.8 101 35.6
FvH4_3g44810 Fragaria vesca HOM05D001193 ORTHO05D001016 3.6e-08 62.4 101 35.6
FAN11G3039 Fragaria x ananassa HOM05D001193 ORTHO05D001016 3.6e-08 62.4 101 35.6
FAN21G3972 Fragaria x ananassa HOM05D001193 ORTHO05D001016 3.6e-08 62.4 101 35.6
FAN25G1836 Fragaria x ananassa HOM05D001193 ORTHO05D001016 3.6e-08 62.4 101 35.6
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 6.1e-08 61.6 103 35.0
AUR62019199 Chenopodium quinoa HOM05D001193 ORTHO05D001016 1.4e-07 60.5 101 37.6
AT1G55240 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 1.8e-07 60.1 101 34.7
RcHm_v2.0_Chr5g0081481 Rosa chinensis HOM05D001193 ORTHO05D001016 1.8e-07 60.1 105 35.2
BcaC08g44183 Brassica carinata HOM05D001193 ORTHO05D001016 2.3e-07 59.7 101 35.6
C06p15870 Brassica napus HOM05D001193 ORTHO05D001016 2.3e-07 59.7 101 35.6
BolC6t36778H Brassica oleracea HOM05D001193 ORTHO05D001016 2.3e-07 59.7 101 35.6
BcaB04g16971 Brassica carinata HOM05D001193 ORTHO05D001016 3.9e-07 58.9 105 33.3
Ciclev10016008m.g Citrus clementina HOM05D001193 ORTHO05D001016 6.7e-07 58.2 103 36.9
BcaC01g01500 Brassica carinata HOM05D001193 ORTHO05D001016 8.8e-07 57.8 108 34.3
A05p17620 Brassica napus HOM05D001193 ORTHO05D001016 8.8e-07 57.8 101 34.7
BraA05t20653Z Brassica rapa HOM05D001193 ORTHO05D001016 8.8e-07 57.8 101 34.7
BraA08t32136Z Brassica rapa HOM05D001193 ORTHO05D001016 8.8e-07 57.8 108 34.3
AUR62019198 Chenopodium quinoa HOM05D000036 ORTHO05D001016 8.8e-07 57.8 115 34.8
Atru.chr3.2252 Acer truncatum HOM05D001193 ORTHO05D001016 1.1e-06 57.4 103 36.9
AT1G55230 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 1.1e-06 57.4 101 34.7
THA.LOC104822627 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 1.1e-06 57.4 111 34.2
Duzib150G1262 Durio zibethinus HOM05D001193 ORTHO05D001016 1.5e-06 57.0 111 34.2
Medtr2g021690 Medicago truncatula HOM05D001193 ORTHO05D001016 1.5e-06 57.0 99 34.3
Prupe.6G010200 Prunus persica HOM05D001193 ORTHO05D001016 1.5e-06 57.0 101 35.6
A08p00790 Brassica napus HOM05D001193 ORTHO05D001016 2.0e-06 56.6 108 34.3
C03p92540 Brassica napus HOM05D001193 ORTHO05D001016 2.0e-06 56.6 108 34.3
HPP92_028665 Vanilla planifolia HOM05D001193 ORTHO05D001016 2.0e-06 56.6 103 37.9
EL10Ac4g10349 Beta vulgaris HOM05D001193 ORTHO05D001016 2.5e-06 56.2 103 35.0
Duzib168G1939 Durio zibethinus HOM05D001193 ORTHO05D001016 3.3e-06 55.8 103 35.0
AL1G63280 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 4.3e-06 55.5 101 32.7
Psat4g110560 Pisum sativum HOM05D001193 ORTHO05D001016 4.3e-06 55.5 102 36.3
AL1G63270 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 5.7e-06 55.1 101 33.7
CDE05G2126 Ceratophyllum demersum HOM05D001193 ORTHO05D001016 5.7e-06 55.1 101 34.7
Os09g0444900 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 5.7e-06 55.1 105 30.5
HPP92_016186 Vanilla planifolia HOM05D001193 ORTHO05D001016 5.7e-06 55.1 97 37.1
Cpa.g.sc119.85 Carica papaya HOM05D001193 ORTHO05D001016 7.4e-06 54.7 103 32.0
MD03G1010400 Malus domestica HOM05D001193 ORTHO05D001016 7.4e-06 54.7 115 31.3
Pp3c5_8910 Physcomitrium patens HOM05D001193 ORTHO05D001016 7.4e-06 54.7 101 33.7
PGR119G2075 Punica granatum HOM05D001193 ORTHO05D001016 7.4e-06 54.7 103 34.0
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 7.4e-06 54.7 115 32.2
THA.LOC104810352 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 7.4e-06 54.7 111 33.3
Atru.chr3.2251 Acer truncatum HOM05D001193 ORTHO05D001016 9.7e-06 54.3 103 37.9
Cpa.g.sc119.84 Carica papaya HOM05D001193 ORTHO05D001016 9.7e-06 54.3 103 32.0
Ca_22487_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 9.7e-06 54.3 102 34.3
Os08g0462800 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 9.7e-06 54.3 105 30.5
TWI60G0171 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 9.7e-06 54.3 111 32.4
HPP92_026731 Vanilla planifolia HOM05D001193 ORTHO05D001016 9.7e-06 54.3 99 38.4


User provided reference genes

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