Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 4.6e-33 144.4 100 100.0
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 2.1e-30 135.6 70 92.9
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 1.8e-29 132.5 70 91.4
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 1.9e-26 122.5 61 98.4
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 3.5e-25 118.2 59 96.6
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 3.0e-24 115.2 68 76.5
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 6.6e-24 114.0 70 75.7
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 6.9e-21 104.0 68 67.6
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 6.9e-21 104.0 70 70.0
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.2e-20 103.2 68 66.2
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 1.2e-20 103.2 68 66.2
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 1.2e-20 103.2 68 66.2
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 4.5e-20 101.3 68 64.7
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 7.6e-20 100.5 69 68.1
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 1.7e-19 99.4 69 65.2
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 3.8e-19 98.2 69 68.1
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 3.8e-19 98.2 62 72.6
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 4.2e-18 94.7 64 65.6
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.2e-17 93.2 64 65.6
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 1.2e-17 93.2 99 55.6
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.6e-17 92.8 69 63.8
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 3.5e-17 91.7 55 83.6
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 6.0e-17 90.9 70 58.6
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 3.0e-16 88.6 61 68.9
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 5.1e-16 87.8 62 64.5
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 5.1e-16 87.8 62 64.5
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 8.7e-16 87.0 58 67.2
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 8.7e-16 87.0 58 67.2
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 8.7e-16 87.0 58 67.2
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 8.7e-16 87.0 62 64.5
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 1.9e-15 85.9 68 58.8
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 4.8e-14 81.3 68 55.9
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 2.4e-13 79.0 42 85.7
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 6.9e-13 77.4 55 63.6
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.5e-12 74.7 68 52.9
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 5.8e-12 74.3 53 66.0
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 1.0e-11 73.6 69 50.7
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 1.7e-11 72.8 42 76.2
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 1.7e-11 72.8 50 64.0
RcHm_v2.0_Chr6g0260361 Rosa chinensis HOM05D007083 ORTHO05D008801 6.5e-11 70.9 75 54.7
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 1.4e-10 69.7 50 60.0
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 1.4e-10 69.7 50 64.0
RcHm_v2.0_Chr7g0225201 Rosa chinensis HOM05D028637 ORTHO05D008801 1.9e-10 69.3 35 94.3
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 3.2e-10 68.6 42 73.8
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 4.2e-10 68.2 50 64.0
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 5.5e-10 67.8 49 63.3
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 7.1e-10 67.4 44 65.9
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 7.1e-10 67.4 48 64.6
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 9.3e-10 67.0 43 69.8
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 1.2e-09 66.6 43 65.1
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 1.2e-09 66.6 43 67.4
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.2e-09 66.6 68 47.1
RcHm_v2.0_Chr7g0225221 Rosa chinensis HOM05D028637 ORTHO05D008801 2.7e-09 65.5 35 91.4
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 3.5e-09 65.1 52 59.6
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 4.6e-09 64.7 42 66.7
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 4.6e-09 64.7 48 62.5
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 1.0e-08 63.5 43 65.1
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 1.0e-08 63.5 48 56.2
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 1.8e-08 62.8 47 57.4
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 2.3e-08 62.4 42 64.3
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 2.3e-08 62.4 48 58.3
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 3.0e-08 62.0 44 61.4
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 3.9e-08 61.6 45 62.2
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 5.1e-08 61.2 41 65.9
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 5.1e-08 61.2 41 65.9
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 5.1e-08 61.2 45 55.6
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 6.7e-08 60.8 45 60.0
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 8.7e-08 60.5 45 57.8
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 8.7e-08 60.5 43 62.8
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 1.1e-07 60.1 43 58.1
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 1.1e-07 60.1 41 61.0
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 1.1e-07 60.1 43 62.8
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 1.1e-07 60.1 44 61.4
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 1.9e-07 59.3 43 62.8
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 1.9e-07 59.3 47 51.1
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 1.9e-07 59.3 43 60.5
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 2.5e-07 58.9 31 83.9
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 2.5e-07 58.9 31 83.9
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 2.5e-07 58.9 45 57.8
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 3.3e-07 58.5 45 57.8
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 4.3e-07 58.2 43 60.5
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 7.4e-07 57.4 61 44.3
Dinv21282 Davidia involucrata HOM05D006931 ORTHO05D028388 7.4e-07 57.4 60 43.3
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 1.3e-06 56.6 40 60.0
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 1.3e-06 56.6 44 54.5
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 2.1e-06 55.8 62 45.2
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 2.1e-06 55.8 61 41.0
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 3.7e-06 55.1 62 40.3
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 3.7e-06 55.1 65 43.1
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 4.8e-06 54.7 57 43.9
BraA07t28306Z Brassica rapa HOM05D007083 ORTHO05D008801 4.8e-06 54.7 40 57.5
CARHR009830 Cardamine hirsuta HOM05D006888 ORTHO05D008371 4.8e-06 54.7 57 43.9
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 4.8e-06 54.7 27 96.3
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 6.2e-06 54.3 62 43.5
Phvul.004G009641 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.2e-06 53.9 63 41.3
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.2e-06 53.9 63 41.3
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 8.2e-06 53.9 61 44.3


User provided reference genes

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