Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260181 Rosa chinensis HOM05D002601 ORTHO05D002884 2.5e-78 295.4 154 100.0
RcHm_v2.0_Chr6g0292981 Rosa chinensis HOM05D002601 ORTHO05D002884 2.2e-66 255.8 149 91.9
FvH4_2g25000 Fragaria vesca HOM05D002601 ORTHO05D002884 2.5e-62 242.3 149 86.6
FAN20G2067 Fragaria x ananassa HOM05D002601 ORTHO05D002884 2.5e-62 242.3 149 86.6
FAN24G2549 Fragaria x ananassa HOM05D002601 ORTHO05D002884 2.5e-62 242.3 149 86.6
FAN27G1415 Fragaria x ananassa HOM05D002601 ORTHO05D002884 9.5e-62 240.4 149 85.9
FAN15G3490 Fragaria x ananassa HOM05D002601 ORTHO05D002884 1.8e-60 236.1 149 85.2
MD11G1301500 Malus domestica HOM05D002601 ORTHO05D002884 3.0e-47 192.2 152 67.8
Prupe.8G255000 Prunus persica HOM05D002601 ORTHO05D002884 6.6e-47 191.0 147 70.7
MD03G1280500 Malus domestica HOM05D002601 ORTHO05D002884 2.1e-45 186.0 152 67.8
COL.COLO4_08005 Corchorus olitorius HOM05D002601 ORTHO05D002884 7.8e-40 167.5 137 67.9
PGR119G2053 Punica granatum HOM05D002601 ORTHO05D002884 2.3e-39 166.0 156 61.5
TAR633G0195 Trochodendron aralioides HOM05D002601 ORTHO05D002884 3.0e-39 165.6 136 66.2
Haze_04851 Corylus avellana HOM05D002601 ORTHO05D002884 6.6e-39 164.5 152 63.8
Duzib138G0548 Durio zibethinus HOM05D002601 ORTHO05D002884 1.9e-38 162.9 135 65.2
Manes.01G215500 Manihot esculenta HOM05D002601 ORTHO05D002884 1.9e-38 162.9 155 62.6
Nn3g21372 Nelumbo nucifera HOM05D002601 ORTHO05D002884 3.3e-38 162.2 155 60.6
Dinv33014 Davidia involucrata HOM05D002601 ORTHO05D002884 2.1e-37 159.5 139 64.0
CANSAT25G3467 Cannabis sativa HOM05D002601 ORTHO05D002884 4.7e-37 158.3 155 59.4
CiPaw.07G102600 Carya illinoinensis HOM05D002601 ORTHO05D002884 4.7e-37 158.3 152 59.2
Lalb_Chr18g0047301 Lupinus albus HOM05D002601 ORTHO05D002884 6.2e-37 157.9 158 60.1
Potri.014G133400 Populus trichocarpa HOM05D002601 ORTHO05D002884 6.2e-37 157.9 154 60.4
Sabra14G0099600 Salix brachista HOM05D002601 ORTHO05D002884 1.4e-36 156.8 154 59.7
Ciclev10023263m.g Citrus clementina HOM05D002601 ORTHO05D002884 3.1e-36 155.6 136 63.2
Gorai.004G141200 Gossypium raimondii HOM05D002601 ORTHO05D002884 8.9e-36 154.1 134 64.9
Actinidia00684 Actinidia chinensis HOM05D002601 ORTHO05D002884 1.2e-35 153.7 157 59.9
TPR.G9284 Trifolium pratense HOM05D002601 ORTHO05D002884 1.5e-35 153.3 140 60.7
Thecc.01G293300 Theobroma cacao HOM05D002601 ORTHO05D002884 2.0e-35 152.9 156 57.7
Glyma.03G210800 Glycine max HOM05D002601 ORTHO05D002884 2.6e-35 152.5 143 60.8
Gohir.D08G137900 Gossypium hirsutum HOM05D002601 ORTHO05D002884 2.6e-35 152.5 134 64.2
GSVIVG01010979001 Vitis vinifera HOM05D002601 ORTHO05D002884 4.4e-35 151.8 154 59.1
Atru.chr5.1246 Acer truncatum HOM05D002601 ORTHO05D002884 5.8e-35 151.4 155 60.0
Gohir.A08G117100 Gossypium hirsutum HOM05D002601 ORTHO05D002884 7.6e-35 151.0 134 63.4
Psat3g023960 Pisum sativum HOM05D002601 ORTHO05D002884 1.7e-34 149.8 140 60.0
TWI14G0512 Tripterygium wilfordii HOM05D002601 ORTHO05D002884 2.2e-34 149.4 119 67.2
Glyma.19G208000 Glycine max HOM05D002601 ORTHO05D002884 2.9e-34 149.1 115 69.6
Sc17g0003460 Simmondsia chinensis HOM05D002601 ORTHO05D002884 3.7e-34 148.7 155 56.1
Ca_09125_v3 Cicer arietinum L. HOM05D002601 ORTHO05D002884 4.9e-34 148.3 140 59.3
VMungo1383G0081 Vigna mungo HOM05D002601 ORTHO05D002884 1.1e-33 147.1 112 68.8
Phvul.001G203900 Phaseolus vulgaris HOM05D002601 ORTHO05D002884 2.4e-33 146.0 136 61.0
C08p37620 Brassica napus HOM05D002601 ORTHO05D002884 3.2e-33 145.6 119 63.9
Lj1g0022801 Lotus japonicus HOM05D002601 ORTHO05D002884 3.2e-33 145.6 117 65.8
Medtr7g108300 Medicago truncatula HOM05D002601 ORTHO05D002884 3.2e-33 145.6 132 59.8
Nitab4.5_0001102g0090 Nicotiana tabacum HOM05D002601 ORTHO05D002884 9.2e-33 144.1 151 55.0
Sed0025712 Sechium edule HOM05D002601 ORTHO05D002884 9.2e-33 144.1 148 54.1
CAN.G1777.1 Capsicum annuum HOM05D002601 ORTHO05D002884 1.6e-32 143.3 109 71.6
Eucgr.H01195 Eucalyptus grandis HOM05D002601 ORTHO05D002884 1.6e-32 143.3 150 55.3
Thhalv10006001m.g Eutrema salsugineum HOM05D002601 ORTHO05D002884 2.1e-32 142.9 119 62.2
THA.LOC104817517 Tarenaya hassleriana HOM05D002601 ORTHO05D002884 2.1e-32 142.9 156 56.4
BcaB02g08090 Brassica carinata HOM05D002601 ORTHO05D002884 2.7e-32 142.5 157 52.2
CsaV3_7G028880 Cucumis sativus L. HOM05D002601 ORTHO05D002884 2.7e-32 142.5 149 55.0
Sed0011599 Sechium edule HOM05D002601 ORTHO05D002884 2.7e-32 142.5 117 64.1
AUR62033203 Chenopodium quinoa HOM05D002601 ORTHO05D002884 3.5e-32 142.1 157 52.9
Migut.D00163 Erythranthe guttata HOM05D002601 ORTHO05D002884 3.5e-32 142.1 150 56.7
BolC8t51345H Brassica oleracea HOM05D002601 ORTHO05D002884 6.0e-32 141.4 119 61.3
BraA09t40885Z Brassica rapa HOM05D002601 ORTHO05D002884 6.0e-32 141.4 119 61.3
Solyc09g074650.3 Solanum lycopersicum HOM05D002601 ORTHO05D002884 7.8e-32 141.0 152 55.9
A09p54760 Brassica napus HOM05D002601 ORTHO05D002884 1.0e-31 140.6 119 61.3
MELO3C016049.2 Cucumis melo HOM05D002601 ORTHO05D002884 1.0e-31 140.6 149 55.0
vmacro02494 Vaccinium macrocarpon HOM05D002601 ORTHO05D002884 1.3e-31 140.2 132 62.9
arahy.Tifrunner.gnm1.ann1.T158V7 Arachis hypogaea HOM05D002601 ORTHO05D002884 1.7e-31 139.8 111 69.4
Sp5g00600 Schrenkiella parvula HOM05D002601 ORTHO05D002884 1.7e-31 139.8 119 61.3
MSTRG.21606 Avicennia marina HOM05D002601 ORTHO05D002884 2.3e-31 139.4 119 64.7
SalBow1G5890 Salvia bowleyana HOM05D002601 ORTHO05D002884 2.3e-31 139.4 119 63.0
SalBow3G4602 Salvia bowleyana HOM05D002601 ORTHO05D002884 2.3e-31 139.4 119 63.0
A04p00460 Brassica napus HOM05D002601 ORTHO05D002884 3.0e-31 139.0 114 64.0
BraA04t15765Z Brassica rapa HOM05D002601 ORTHO05D002884 3.0e-31 139.0 114 64.0
CSS0025470 Camellia sinensis var. sinensis HOM05D002601 ORTHO05D002884 3.9e-31 138.7 136 64.0
Sopen09g029530 Solanum pennellii HOM05D002601 ORTHO05D002884 3.9e-31 138.7 152 57.2
Aqoxy5G00671 Aquilegia oxysepala HOM05D002601 ORTHO05D002884 6.6e-31 137.9 133 58.6
QL12p024487 Quercus lobata HOM05D002601 ORTHO05D002884 8.6e-31 137.5 199 47.2
CDE01G0340 Ceratophyllum demersum HOM05D002601 ORTHO05D002884 1.1e-30 137.1 113 62.8
Cc01_g20440 Coffea canephora HOM05D002601 ORTHO05D002884 1.1e-30 137.1 111 67.6
BcaC02g10322 Brassica carinata HOM05D002601 ORTHO05D002884 1.5e-30 136.7 114 62.3
C04p30340 Brassica napus HOM05D002601 ORTHO05D002884 1.5e-30 136.7 114 62.3
BolC4t24567H Brassica oleracea HOM05D002601 ORTHO05D002884 1.5e-30 136.7 114 62.3
AUR62008568 Chenopodium quinoa HOM05D002601 ORTHO05D002884 1.5e-30 136.7 120 61.7
HPP92_016928 Vanilla planifolia HOM05D002601 ORTHO05D002884 2.5e-30 136.0 120 57.5
Carub.0005s2956 Capsella rubella HOM05D002601 ORTHO05D002884 3.3e-30 135.6 119 61.3
ClCG09G006250 Citrullus lanatus HOM05D002601 ORTHO05D002884 4.3e-30 135.2 151 51.7
PSO210G1238 Papaver somniferum HOM05D002601 ORTHO05D002884 4.3e-30 135.2 119 62.2
HanXRQChr01g0001631 Helianthus annuus HOM05D002601 ORTHO05D002884 5.6e-30 134.8 120 65.0
Lsat_1_v5_gn_5_189381 Lactuca sativa HOM05D002601 ORTHO05D002884 5.6e-30 134.8 118 65.3
Ah.08g212390 Amaranthus hybridus HOM05D002601 ORTHO05D002884 9.6e-30 134.0 112 64.3
PSO170G2074 Papaver somniferum HOM05D002601 ORTHO05D002884 1.2e-29 133.7 119 61.3
Nitab4.5_0005245g0020 Nicotiana tabacum HOM05D002601 ORTHO05D002884 2.1e-29 132.9 120 61.7
Oeu057575.1 Olea europaea HOM05D002601 ORTHO05D002884 2.8e-29 132.5 150 54.0
Os11g0657100 Oryza sativa ssp. japonica HOM05D002601 ORTHO05D002884 2.8e-29 132.5 110 62.7
Aa31LG10G16720 Aethionema arabicum HOM05D002601 ORTHO05D002884 4.7e-29 131.7 111 62.2
SGA_v2.0_scaffold1G00397 Striga asiatica HOM05D002601 ORTHO05D002884 4.7e-29 131.7 106 68.9
Hund18087 Selenicereus undatus HOM05D002601 ORTHO05D002884 6.2e-29 131.3 110 62.7
unitig_0.g1184 Utricularia gibba HOM05D002601 ORTHO05D002884 8.1e-29 131.0 114 62.3
AT3G62910 Arabidopsis thaliana HOM05D002601 ORTHO05D002884 5.2e-28 128.3 119 58.0
DCAR_005816 Daucus carota HOM05D002601 ORTHO05D002884 5.2e-28 128.3 146 50.7
AL5G45690 Arabidopsis lyrata HOM05D002601 ORTHO05D002884 2.6e-27 125.9 119 58.0
EL10Ac7g17436 Beta vulgaris HOM05D002601 ORTHO05D002884 1.3e-26 123.6 150 50.7
Zm00001eb165700 Zea mays HOM05D002601 ORTHO05D002884 1.7e-26 123.2 108 58.3
ATR0706G178 Amborella trichopoda HOM05D002601 ORTHO05D002884 2.9e-26 122.5 111 62.2
ECA248G2964 Erigeron canadensis HOM05D002601 ORTHO05D002884 4.9e-26 121.7 109 65.1
Rhsim13G0015700 Rhododendron simsii HOM05D002601 ORTHO05D002884 2.7e-24 115.9 181 46.4
Lj1A36T50 Lonicera japonica HOM05D002601 ORTHO05D002884 1.5e-22 110.2 90 65.6
Cpa.g.sc441.1 Carica papaya HOM05D002601 ORTHO05D002884 1.2e-19 100.5 108 56.5
Peaxi162Scf00067g02115 Petunia axillaris HOM05D002601 ORTHO05D002884 2.6e-19 99.4 95 56.8
Mapoly0086s0032 Marchantia polymorpha HOM05D002601 ORTHO05D002884 1.1e-17 94.0 109 49.5
SMO358G0549 Selaginella moellendorffii HOM05D002601 ORTHO05D002884 1.4e-17 93.6 151 40.4
Pp3c7_80 Physcomitrium patens HOM05D002601 ORTHO05D002884 1.9e-17 93.2 106 46.2
CBR_g23775 Chara braunii HOM05D002601 ORTHO05D002884 3.2e-17 92.4 104 50.0
MCO16G105 Micromonas commoda HOM05D002601 ORTHO05D002884 7.3e-14 81.3 105 43.8
SEGI_05330 Sequoiadendron giganteum HOM05D002601 ORTHO05D002884 2.4e-12 76.3 92 45.7
CsaV3_6G020200 Cucumis sativus L. HOM05D002601 ORTHO05D002884 1.2e-11 73.9 60 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2030 Anthoceros agrestis HOM05D002601 ORTHO05D002884 3.5e-08 62.4 87 44.8
arahy.Tifrunner.gnm1.ann1.52AYY4 Arachis hypogaea HOM05D002601 ORTHO05D002884 1.9e-06 56.6 36 77.8
Cre16.g673617 Chlamydomonas reinhardtii HOM05D002601 ORTHO05D002884 3.3e-06 55.8 101 33.7


User provided reference genes

Program Settings