Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260161 Rosa chinensis HOM05D007083 ORTHO05D008801 7.7e-100 367.9 303 100.0
RcHm_v2.0_Chr6g0260531 Rosa chinensis HOM05D007083 ORTHO05D008801 7.4e-26 122.1 61 98.4
RcHm_v2.0_Chr6g0266771 Rosa chinensis HOM05D007083 ORTHO05D008801 6.9e-24 115.5 61 91.8
RcHm_v2.0_Chr6g0260661 Rosa chinensis HOM05D007083 ORTHO05D008801 9.0e-24 115.2 59 94.9
RcHm_v2.0_Chr2g0124591 Rosa chinensis HOM05D007083 ORTHO05D008801 2.0e-23 114.0 61 90.2
Ca_20820_v3 Cicer arietinum L. HOM05D007083 ORTHO05D008801 1.6e-20 104.4 61 77.0
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 1.8e-19 100.9 61 77.0
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 3.7e-17 93.2 61 67.2
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 6.3e-17 92.4 61 65.6
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 6.3e-17 92.4 61 65.6
PGSC0003DMG400025930 Solanum tuberosum HOM05D007083 ORTHO05D008801 6.3e-17 92.4 61 65.6
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 2.4e-16 90.5 61 63.9
Gohir.A04G115700 Gossypium hirsutum HOM05D007083 ORTHO05D008801 4.1e-16 89.7 61 70.5
Gohir.A12G030100 Gossypium hirsutum HOM05D007083 ORTHO05D008801 9.1e-16 88.6 61 68.9
Gohir.D12G042300 Gossypium hirsutum HOM05D007083 ORTHO05D008801 9.1e-16 88.6 61 68.9
RcHm_v2.0_Chr6g0260391 Rosa chinensis HOM05D007083 ORTHO05D008801 9.1e-16 88.6 55 81.8
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 3.4e-15 86.7 54 72.2
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 4.5e-15 86.3 61 63.9
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 7.7e-15 85.5 61 67.2
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 2.2e-14 84.0 61 63.9
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 8.5e-14 82.0 54 66.7
Ah.01g019870 Amaranthus hybridus HOM05D007083 ORTHO05D008801 1.4e-13 81.3 54 68.5
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 1.4e-13 81.3 54 66.7
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 1.4e-13 81.3 54 66.7
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 1.4e-13 81.3 54 66.7
EL10Ac9g21792 Beta vulgaris HOM05D007083 ORTHO05D008801 2.5e-13 80.5 54 66.7
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 2.5e-13 80.5 54 66.7
RcHm_v2.0_Chr6g0260761 Rosa chinensis HOM05D007083 ORTHO05D008801 2.5e-13 80.5 80 56.2
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 4.2e-13 79.7 61 59.0
Sc18g0004860 Simmondsia chinensis HOM05D007083 ORTHO05D008801 4.2e-13 79.7 61 60.7
FAN20G1975 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.2e-12 78.2 42 85.7
Duzib052G0394 Durio zibethinus HOM05D007083 ORTHO05D008801 2.1e-12 77.4 55 63.6
HanXRQChr12g0374971 Helianthus annuus HOM05D007083 ORTHO05D008801 3.6e-12 76.6 56 62.5
TAR369G0752 Trochodendron aralioides HOM05D007083 ORTHO05D008801 1.4e-11 74.7 53 66.0
Sc18g0004780 Simmondsia chinensis HOM05D007083 ORTHO05D008801 3.9e-11 73.2 61 55.7
DCAR_003627 Daucus carota HOM05D007083 ORTHO05D008801 5.1e-11 72.8 50 64.0
Ciclev10030406m.g Citrus clementina HOM05D007083 ORTHO05D008801 4.4e-10 69.7 50 60.0
Potri.004G147700 Populus trichocarpa HOM05D007083 ORTHO05D008801 4.4e-10 69.7 50 64.0
RcHm_v2.0_Chr6g0260361 Rosa chinensis HOM05D007083 ORTHO05D008801 7.4e-10 68.9 71 56.3
CARHR106000 Cardamine hirsuta HOM05D007083 ORTHO05D008801 9.7e-10 68.6 42 73.8
Gorai.008G044300 Gossypium raimondii HOM05D007083 ORTHO05D008801 1.3e-09 68.2 50 64.0
Sabra04G0098000 Salix brachista HOM05D007083 ORTHO05D008801 1.7e-09 67.8 49 63.3
AT2G15630 Arabidopsis thaliana HOM05D007083 ORTHO05D008801 2.2e-09 67.4 51 58.8
arahy.Tifrunner.gnm1.ann1.CNDX61 Arachis hypogaea HOM05D007083 ORTHO05D008801 2.2e-09 67.4 48 64.6
Carub.0003s2940 Capsella rubella HOM05D007083 ORTHO05D008801 2.8e-09 67.0 43 69.8
Aa31LG8G13290 Aethionema arabicum HOM05D007083 ORTHO05D008801 3.7e-09 66.6 50 58.0
AL3G47400 Arabidopsis lyrata HOM05D007083 ORTHO05D008801 3.7e-09 66.6 43 67.4
CANSAT25G2501 Cannabis sativa HOM05D007083 ORTHO05D008801 1.1e-08 65.1 52 59.6
QL11p039212 Quercus lobata HOM05D007083 ORTHO05D008801 1.4e-08 64.7 42 66.7
Sabra18G0050700 Salix brachista HOM05D007083 ORTHO05D008801 1.4e-08 64.7 48 62.5
RcHm_v2.0_Chr2g0106031 Rosa chinensis HOM05D021933 ORTHO05D344132 1.8e-08 64.3 30 96.7
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.4e-08 63.9 61 50.8
arahy.Tifrunner.gnm1.ann1.JD2ZC9 Arachis hypogaea HOM05D007083 ORTHO05D008801 3.1e-08 63.5 43 65.1
Psat7g208080 Pisum sativum HOM05D007083 ORTHO05D008801 3.1e-08 63.5 48 56.2
Thecc.02G028500 Theobroma cacao HOM05D007083 ORTHO05D008801 5.3e-08 62.8 47 57.4
Glyma.11G123700 Glycine max HOM05D007083 ORTHO05D008801 7.0e-08 62.4 61 49.2
Glyma.12G048300 Glycine max HOM05D007083 ORTHO05D008801 7.0e-08 62.4 42 64.3
Nn7g35939 Nelumbo nucifera HOM05D007083 ORTHO05D008801 9.1e-08 62.0 48 58.3
QL11p039208 Quercus lobata HOM05D007083 ORTHO05D008801 9.1e-08 62.0 44 61.4
CSS0008892 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.2e-07 61.6 41 65.9
CSS0024065 Camellia sinensis var. sinensis HOM05D007083 ORTHO05D008801 1.2e-07 61.6 41 65.9
Lj2P412T37 Lonicera japonica HOM05D007083 ORTHO05D008801 1.2e-07 61.6 45 62.2
Cc02_g18190 Coffea canephora HOM05D007083 ORTHO05D008801 2.0e-07 60.8 45 55.6
Eucgr.J00091 Eucalyptus grandis HOM05D007083 ORTHO05D008801 2.0e-07 60.8 45 60.0
Lj3g0002320 Lotus japonicus HOM05D007083 ORTHO05D008801 2.6e-07 60.5 45 57.8
SHI08173 Sapria himalayana HOM05D007083 ORTHO05D008801 2.6e-07 60.5 43 62.8
BcaB03g14591 Brassica carinata HOM05D007083 ORTHO05D008801 3.4e-07 60.1 41 61.0
Dinv23578 Davidia involucrata HOM05D007083 ORTHO05D008801 3.4e-07 60.1 43 62.8
Manes.15G145600 Manihot esculenta HOM05D007083 ORTHO05D008801 3.4e-07 60.1 44 61.4
Aqoxy7G03503 Aquilegia oxysepala HOM05D007083 ORTHO05D008801 4.5e-07 59.7 43 58.1
CiPaw.06G139300 Carya illinoinensis HOM05D007083 ORTHO05D008801 5.9e-07 59.3 43 62.8
GSVIVG01029769001 Vitis vinifera HOM05D007083 ORTHO05D008801 5.9e-07 59.3 43 60.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.7e-07 58.9 61 45.9
VMungo1383G2401 Vigna mungo HOM05D007083 ORTHO05D008801 7.7e-07 58.9 45 57.8
Actinidia17838 Actinidia chinensis HOM05D007083 ORTHO05D008801 1.0e-06 58.5 45 57.8
Phvul.001G085800 Phaseolus vulgaris HOM05D007083 ORTHO05D008801 1.3e-06 58.2 43 60.5
HPP92_019625 Vanilla planifolia HOM05D007083 ORTHO05D008801 1.3e-06 58.2 47 51.1
FvH4_2g07360 Fragaria vesca HOM05D007083 ORTHO05D008801 1.7e-06 57.8 31 83.9
FAN24G0977 Fragaria x ananassa HOM05D007083 ORTHO05D008801 1.7e-06 57.8 31 83.9
Atru.BG.59.p Acer truncatum HOM05D007083 ORTHO05D008801 2.2e-06 57.4 33 75.8
RcHm_v2.0_Chr6g0259961 Rosa chinensis HOM05D007083 ORTHO05D008801 2.9e-06 57.0 27 100.0
A07p05120 Brassica napus HOM05D007083 ORTHO05D008801 3.8e-06 56.6 40 60.0
Rhsim05G0078900 Rhododendron simsii HOM05D007083 ORTHO05D008801 3.8e-06 56.6 44 54.5


User provided reference genes

Program Settings