Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0260061 Rosa chinensis HOM05D001193 ORTHO05D001016 2.0e-36 155.2 75 100.0
RcHm_v2.0_Chr6g0260141 Rosa chinensis HOM05D001193 ORTHO05D001016 7.2e-31 136.7 73 90.4
RcHm_v2.0_Chr6g0260381 Rosa chinensis HOM05D001193 ORTHO05D001016 2.3e-29 131.7 75 84.0
FvH4_2g07340 Fragaria vesca HOM05D001193 ORTHO05D001016 3.3e-28 127.9 69 85.5
FAN24G2224 Fragaria x ananassa HOM05D001193 ORTHO05D001016 3.3e-28 127.9 69 85.5
FAN20G3093 Fragaria x ananassa HOM05D001193 ORTHO05D001016 4.4e-28 127.5 69 85.5
RcHm_v2.0_Chr6g0260651 Rosa chinensis HOM05D001193 ORTHO05D001016 4.4e-28 127.5 69 88.4
RcHm_v2.0_Chr2g0124381 Rosa chinensis HOM05D001193 ORTHO05D001016 5.7e-28 127.1 69 88.4
RcHm_v2.0_Chr6g0260551 Rosa chinensis HOM05D001193 ORTHO05D001016 2.4e-26 121.7 65 86.2
RcHm_v2.0_Chr6g0260601 Rosa chinensis HOM05D001193 ORTHO05D001016 1.2e-25 119.4 69 84.1
Prupe.8G112800 Prunus persica HOM05D001193 ORTHO05D001016 2.0e-25 118.6 68 80.9
RcHm_v2.0_Chr6g0260751 Rosa chinensis HOM05D001193 ORTHO05D001016 2.6e-25 118.2 60 90.0
Cfa004945 Carpinus fangiana HOM05D001193 ORTHO05D001016 2.9e-24 114.8 68 76.5
CiPaw.05G058600 Carya illinoinensis HOM05D001193 ORTHO05D001016 5.0e-24 114.0 68 76.5
CANSAT25G0687 Cannabis sativa HOM05D001193 ORTHO05D001016 1.2e-22 109.4 69 78.3
RcHm_v2.0_Chr6g0260351 Rosa chinensis HOM05D001193 ORTHO05D001016 1.6e-22 109.0 54 90.7
Ciclev10028950m.g Citrus clementina HOM05D001193 ORTHO05D001016 3.9e-21 104.4 68 70.6
TAR623G0463 Trochodendron aralioides HOM05D001193 ORTHO05D001016 6.7e-21 103.6 68 67.6
Atru.chr5.2874 Acer truncatum HOM05D001193 ORTHO05D001016 1.5e-20 102.4 69 69.6
CSS0046353 Camellia sinensis var. sinensis HOM05D001193 ORTHO05D001016 9.7e-20 99.8 68 63.2
Lalb_Chr19g0138501 Lupinus albus HOM05D001193 ORTHO05D001016 2.8e-19 98.2 68 64.7
Potri.009G108900 Populus trichocarpa HOM05D001193 ORTHO05D001016 2.8e-19 98.2 68 69.1
AUR62011399 Chenopodium quinoa HOM05D001193 ORTHO05D001016 4.8e-19 97.4 69 66.7
Manes.15G145500 Manihot esculenta HOM05D001193 ORTHO05D001016 1.1e-18 96.3 69 63.8
Oeu003706.1 Olea europaea HOM05D001193 ORTHO05D001016 1.4e-18 95.9 69 60.9
Sabra09G0083200 Salix brachista HOM05D001193 ORTHO05D001016 2.4e-18 95.1 68 67.6
Dinv23579 Davidia involucrata HOM05D001193 ORTHO05D001016 3.1e-18 94.7 63 66.7
AUR62016659 Chenopodium quinoa HOM05D001193 ORTHO05D001016 4.1e-18 94.4 69 66.7
arahy.Tifrunner.gnm1.ann1.EFX8YV Arachis hypogaea HOM05D001193 ORTHO05D001016 5.3e-18 94.0 70 61.4
arahy.Tifrunner.gnm1.ann1.PM0FQ0 Arachis hypogaea HOM05D001193 ORTHO05D001016 5.3e-18 94.0 70 61.4
Phvul.001G085900 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 5.3e-18 94.0 68 63.2
CsaV3_7G010100 Cucumis sativus L. HOM05D001193 ORTHO05D001016 7.0e-18 93.6 70 61.4
Migut.N01211 Erythranthe guttata HOM05D001193 ORTHO05D001016 7.0e-18 93.6 69 59.4
EL10Ac9g21793 Beta vulgaris HOM05D001193 ORTHO05D001016 9.1e-18 93.2 70 61.4
Nn2g15762 Nelumbo nucifera HOM05D001193 ORTHO05D001016 1.6e-17 92.4 68 63.2
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 2.0e-17 92.0 68 60.3
Ca_20816_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 3.5e-17 91.3 69 60.9
ClCG02G005530 Citrullus lanatus HOM05D001193 ORTHO05D001016 3.5e-17 91.3 70 57.1
Thhalv10011694m.g Eutrema salsugineum HOM05D001193 ORTHO05D001016 5.9e-17 90.5 73 63.0
Glyma.12G048400 Glycine max HOM05D001193 ORTHO05D001016 5.9e-17 90.5 68 61.8
Oeu010569.1 Olea europaea HOM05D001193 ORTHO05D001016 7.7e-17 90.1 69 55.1
Ah.01g019880 Amaranthus hybridus HOM05D001193 ORTHO05D001016 1.0e-16 89.7 69 59.4
TWI75G0428 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 1.3e-16 89.4 69 60.9
Medtr4g068340 Medicago truncatula HOM05D001193 ORTHO05D001016 3.8e-16 87.8 69 58.0
Lj3g0025270 Lotus japonicus HOM05D001193 ORTHO05D001016 5.0e-16 87.4 68 55.9
C08p04160 Brassica napus HOM05D001193 ORTHO05D001016 8.5e-16 86.7 69 60.9
MBI19_g17434_MAGBIO Magnolia biondii HOM05D001193 ORTHO05D001016 8.5e-16 86.7 68 57.4
SalBow3G3241 Salvia bowleyana HOM05D001193 ORTHO05D001016 8.5e-16 86.7 69 56.5
Eucgr.G00509 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.1e-15 86.3 68 57.4
Eucgr.G01533 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.1e-15 86.3 68 57.4
Sp1g36300 Schrenkiella parvula HOM05D001193 ORTHO05D001016 1.1e-15 86.3 69 60.9
Cpa.g.sc62.79 Carica papaya HOM05D001193 ORTHO05D001016 1.5e-15 85.9 69 56.5
TWI79G0515 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 1.5e-15 85.9 68 60.3
BcaC07g37049 Brassica carinata HOM05D001193 ORTHO05D001016 1.9e-15 85.5 69 60.9
BolC8t47218H Brassica oleracea HOM05D001193 ORTHO05D001016 1.9e-15 85.5 69 60.9
Glyma.11G123900 Glycine max HOM05D001193 ORTHO05D001016 2.5e-15 85.1 68 58.8
SGA_v2.0_scaffold55G19827 Striga asiatica HOM05D001193 ORTHO05D001016 2.5e-15 85.1 69 56.5
DCAR_029009 Daucus carota HOM05D001193 ORTHO05D001016 4.2e-15 84.3 69 59.4
Sed0025947 Sechium edule HOM05D001193 ORTHO05D001016 4.2e-15 84.3 70 54.3
BcaB04g17337 Brassica carinata HOM05D001193 ORTHO05D001016 5.5e-15 84.0 69 59.4
A08p03930 Brassica napus HOM05D001193 ORTHO05D001016 5.5e-15 84.0 69 59.4
BraA08t32422Z Brassica rapa HOM05D001193 ORTHO05D001016 5.5e-15 84.0 69 59.4
CARHR039470 Cardamine hirsuta HOM05D001193 ORTHO05D001016 7.2e-15 83.6 73 58.9
Os08g0462900 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 7.2e-15 83.6 69 53.6
PGR042G2327 Punica granatum HOM05D001193 ORTHO05D001016 7.2e-15 83.6 69 52.2
Aqoxy7G01067 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 9.4e-15 83.2 68 57.4
ECA236G2558 Erigeron canadensis HOM05D001193 ORTHO05D001016 9.4e-15 83.2 69 53.6
Psat7g208040 Pisum sativum HOM05D001193 ORTHO05D001016 9.4e-15 83.2 70 57.1
TPR.G10223 Trifolium pratense HOM05D001193 ORTHO05D001016 1.6e-14 82.4 69 58.0
Nitab4.5_0002543g0010 Nicotiana tabacum HOM05D001193 ORTHO05D001016 2.1e-14 82.0 69 49.3
Aa31LG10G4530 Aethionema arabicum HOM05D001193 ORTHO05D001016 2.7e-14 81.6 73 56.2
AT1G49470 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 2.7e-14 81.6 73 56.2
Nitab4.5_0005466g0020 Nicotiana tabacum HOM05D001193 ORTHO05D001016 2.7e-14 81.6 69 47.8
PSO384G3666 Papaver somniferum HOM05D001193 ORTHO05D001016 4.7e-14 80.9 70 55.7
Lsat_1_v5_gn_7_88001 Lactuca sativa HOM05D001193 ORTHO05D001016 6.1e-14 80.5 69 53.6
PSO339G4892 Papaver somniferum HOM05D001193 ORTHO05D001016 1.4e-13 79.3 70 52.9
THA.LOC104808456 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 3.0e-13 78.2 73 52.1
Solyc10g050430.1 Solanum lycopersicum HOM05D001193 ORTHO05D001016 4.0e-13 77.8 70 48.6
Sopen10g022080 Solanum pennellii HOM05D001193 ORTHO05D001016 4.0e-13 77.8 70 48.6
Carub.0001s3865 Capsella rubella HOM05D001193 ORTHO05D001016 6.8e-13 77.0 73 52.1
CAN.G1269.6 Capsicum annuum HOM05D001193 ORTHO05D001016 8.8e-13 76.6 68 47.1
AL1G56790 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 2.0e-12 75.5 73 50.7
HanXRQChr16g0506061 Helianthus annuus HOM05D001193 ORTHO05D001016 3.4e-12 74.7 69 52.2
QL11p039205 Quercus lobata HOM05D001193 ORTHO05D001016 5.7e-12 73.9 73 52.1
PGSC0003DMG400006222 Solanum tuberosum HOM05D001193 ORTHO05D001016 1.3e-11 72.8 70 47.1
Cc02_g18200 Coffea canephora HOM05D001193 ORTHO05D001016 1.4e-10 69.3 68 44.1
FAN15G2329 Fragaria x ananassa HOM05D001193 ORTHO05D001016 9.1e-10 66.6 38 78.9
Pp3c1_25080 Physcomitrium patens HOM05D001193 ORTHO05D001016 1.6e-09 65.9 68 47.1
Peaxi162Scf00003g02218 Petunia axillaris HOM05D001193 ORTHO05D001016 7.7e-09 63.5 73 41.1
AT1G55240 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 1.5e-07 59.3 68 42.6
Mapoly0016s0059 Marchantia polymorpha HOM05D001193 ORTHO05D001016 2.5e-07 58.5 68 42.6
AUR62019199 Chenopodium quinoa HOM05D001193 ORTHO05D001016 5.5e-07 57.4 61 42.6
Pp3c5_8910 Physcomitrium patens HOM05D001193 ORTHO05D001016 5.5e-07 57.4 61 42.6
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 5.5e-07 57.4 45 51.1
BcaC08g44183 Brassica carinata HOM05D001193 ORTHO05D001016 9.4e-07 56.6 73 45.2
C06p15870 Brassica napus HOM05D001193 ORTHO05D001016 9.4e-07 56.6 73 45.2
BolC6t36778H Brassica oleracea HOM05D001193 ORTHO05D001016 9.4e-07 56.6 73 45.2
CARHR044890 Cardamine hirsuta HOM05D001193 ORTHO05D001016 1.6e-06 55.8 68 41.2
Thhalv10011951m.g Eutrema salsugineum HOM05D001193 ORTHO05D001016 1.6e-06 55.8 73 41.1
BcaB04g16971 Brassica carinata HOM05D001193 ORTHO05D001016 2.1e-06 55.5 73 43.8
BcaC01g01479 Brassica carinata HOM05D001193 ORTHO05D001016 2.1e-06 55.5 73 43.8
BcaC01g01500 Brassica carinata HOM05D001193 ORTHO05D001016 2.1e-06 55.5 73 43.8
C03p92480 Brassica napus HOM05D001193 ORTHO05D001016 2.1e-06 55.5 73 43.8
BolC3t21559H Brassica oleracea HOM05D001193 ORTHO05D001016 2.1e-06 55.5 73 43.8
A05p17620 Brassica napus HOM05D001193 ORTHO05D001016 2.7e-06 55.1 68 42.6
BraA05t20653Z Brassica rapa HOM05D001193 ORTHO05D001016 2.7e-06 55.1 68 42.6
Ca_22487_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 3.6e-06 54.7 66 40.9
FAN16G0935 Fragaria x ananassa HOM05D001193 ORTHO05D001016 3.6e-06 54.7 61 41.0
MD03G1010400 Malus domestica HOM05D001193 ORTHO05D001016 3.6e-06 54.7 68 41.2
MD11G1012300 Malus domestica HOM05D001193 ORTHO05D001016 3.6e-06 54.7 68 41.2
Medtr2g021690 Medicago truncatula HOM05D001193 ORTHO05D001016 3.6e-06 54.7 61 42.6
Psat4g110560 Pisum sativum HOM05D001193 ORTHO05D001016 3.6e-06 54.7 66 42.4
A08p00790 Brassica napus HOM05D001193 ORTHO05D001016 4.7e-06 54.3 73 43.8
C03p92540 Brassica napus HOM05D001193 ORTHO05D001016 4.7e-06 54.3 73 43.8
BraA08t32136Z Brassica rapa HOM05D001193 ORTHO05D001016 4.7e-06 54.3 73 43.8
TPR.G14197 Trifolium pratense HOM05D001193 ORTHO05D001016 4.7e-06 54.3 68 38.2
BolC3t21560H Brassica oleracea HOM05D001193 ORTHO05D001016 6.1e-06 53.9 68 42.6
FvH4_3g44810 Fragaria vesca HOM05D001193 ORTHO05D001016 6.1e-06 53.9 61 41.0
FAN11G3039 Fragaria x ananassa HOM05D001193 ORTHO05D001016 6.1e-06 53.9 61 41.0
FAN21G3972 Fragaria x ananassa HOM05D001193 ORTHO05D001016 6.1e-06 53.9 61 41.0
FAN25G1836 Fragaria x ananassa HOM05D001193 ORTHO05D001016 6.1e-06 53.9 61 41.0
Manes.03G088503 Manihot esculenta HOM05D001193 ORTHO05D001016 6.1e-06 53.9 68 41.2
Manes.03G088519 Manihot esculenta HOM05D001193 ORTHO05D001016 6.1e-06 53.9 68 41.2
Actinidia18151 Actinidia chinensis HOM05D001193 ORTHO05D001016 8.0e-06 53.5 66 39.4
AL1G63280 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 8.0e-06 53.5 68 39.7
Ciclev10016008m.g Citrus clementina HOM05D001193 ORTHO05D001016 8.0e-06 53.5 61 42.6
Cc01_g01620 Coffea canephora HOM05D001193 ORTHO05D001016 8.0e-06 53.5 68 38.2
Lalb_Chr18g0056051 Lupinus albus HOM05D001193 ORTHO05D001016 8.0e-06 53.5 68 41.2
Manes.15G105200 Manihot esculenta HOM05D001193 ORTHO05D001016 8.0e-06 53.5 68 41.2
RcHm_v2.0_Chr5g0081481 Rosa chinensis HOM05D001193 ORTHO05D001016 8.0e-06 53.5 61 42.6


User provided reference genes

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