Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0259831 Rosa chinensis HOM05D000001 ORTHO05D011775 1.6e-39 166.4 138 100.0
MD10G1129300 Malus domestica HOM05D000001 ORTHO05D009729 5.4e-16 88.2 50 76.0
FAN20G1433 Fragaria x ananassa HOM05D000001 ORTHO05D009729 2.7e-15 85.9 51 78.4
Peaxi162Scf00165g00085 Petunia axillaris HOM05D000001 ORTHO05D009729 2.7e-15 85.9 127 70.9
FvH4_2g07250 Fragaria vesca HOM05D000001 ORTHO05D009729 6.0e-15 84.7 49 81.6
FAN24G2844 Fragaria x ananassa HOM05D000001 ORTHO05D009729 6.0e-15 84.7 49 81.6
Prupe.8G170100 Prunus persica HOM05D000001 ORTHO05D009729 1.0e-14 84.0 50 74.0
CAN.G159.1 Capsicum annuum HOM05D000001 ORTHO05D009729 1.6e-12 76.6 51 62.7
Cfa019772 Carpinus fangiana HOM05D000001 ORTHO05D009729 2.1e-12 76.3 49 67.3
QL11p052526 Quercus lobata HOM05D001734 ORTHO05D006943 2.1e-12 76.3 50 70.0
Haze_18676 Corylus avellana HOM05D000001 ORTHO05D009729 1.1e-11 73.9 47 66.0
Rhsim11G0194200 Rhododendron simsii HOM05D000001 ORTHO05D009729 1.4e-11 73.6 132 53.0
Lj4g0028187 Lotus japonicus HOM05D000001 ORTHO05D009729 5.2e-11 71.6 43 72.1
Duzib052G0304 Durio zibethinus HOM05D000001 ORTHO05D009729 1.2e-10 70.5 50 64.0
Glyma.05G122700 Glycine max HOM05D000001 ORTHO05D009729 1.2e-10 70.5 40 75.0
PGSC0003DMG400022610 Solanum tuberosum HOM05D000001 ORTHO05D009729 1.2e-10 70.5 49 61.2
Thecc.02G053700 Theobroma cacao HOM05D000001 ORTHO05D009729 1.2e-10 70.5 50 62.0
Nitab4.5_0002312g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009729 2.6e-10 69.3 49 59.2
arahy.Tifrunner.gnm1.ann1.2H8AY8 Arachis hypogaea HOM05D000001 ORTHO05D009729 3.4e-10 68.9 46 65.2
COL.COLO4_18016 Corchorus olitorius HOM05D000001 ORTHO05D009729 4.4e-10 68.6 48 64.6
Nitab4.5_0017015g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009729 4.4e-10 68.6 49 57.1
Oeu015523.1 Olea europaea HOM05D000001 ORTHO05D009729 4.4e-10 68.6 47 63.8
arahy.Tifrunner.gnm1.ann1.P3ZSCJ Arachis hypogaea HOM05D000001 ORTHO05D009729 5.8e-10 68.2 46 65.2
Sabra09G0107800 Salix brachista HOM05D000001 ORTHO05D009729 5.8e-10 68.2 51 62.7
Gohir.A12G036000 Gossypium hirsutum HOM05D000001 ORTHO05D009729 7.5e-10 67.8 50 58.0
Gohir.D12G036600 Gossypium hirsutum HOM05D000001 ORTHO05D009729 7.5e-10 67.8 50 58.0
Gorai.008G037800 Gossypium raimondii HOM05D000001 ORTHO05D009729 7.5e-10 67.8 50 58.0
Potri.009G139200 Populus trichocarpa HOM05D000001 ORTHO05D009729 7.5e-10 67.8 49 63.3
Sc20g0005960 Simmondsia chinensis HOM05D000001 ORTHO05D009729 7.5e-10 67.8 56 57.1
Glyma.08G077700 Glycine max HOM05D000001 ORTHO05D009729 1.3e-09 67.0 46 69.6
Solyc05g006460.3 Solanum lycopersicum HOM05D000001 ORTHO05D009729 1.3e-09 67.0 49 61.2
Sopen05g002390 Solanum pennellii HOM05D000001 ORTHO05D009729 1.3e-09 67.0 49 61.2
Actinidia18033 Actinidia chinensis HOM05D000001 ORTHO05D009729 1.7e-09 66.6 50 58.0
Actinidia20535 Actinidia chinensis HOM05D000001 ORTHO05D009729 1.7e-09 66.6 117 63.2
SalBow6G1009 Salvia bowleyana HOM05D000001 ORTHO05D009729 1.7e-09 66.6 49 57.1
TWI31G1181 Tripterygium wilfordii HOM05D000001 ORTHO05D009729 1.7e-09 66.6 49 61.2
A09p16480 Brassica napus HOM05D000001 ORTHO05D009729 2.2e-09 66.2 49 63.3
BraA09t37285Z Brassica rapa HOM05D000001 ORTHO05D009729 2.2e-09 66.2 49 63.3
Thhalv10023975m.g Eutrema salsugineum HOM05D000001 ORTHO05D009729 2.2e-09 66.2 49 65.3
Atru.BG.142.p Acer truncatum HOM05D000001 ORTHO05D009729 2.9e-09 65.9 49 67.3
Carub.0002s0275 Capsella rubella HOM05D000001 ORTHO05D009729 2.9e-09 65.9 49 67.3
BcaB07g31306 Brassica carinata HOM05D000001 ORTHO05D009729 3.7e-09 65.5 49 63.3
Nn5g27562 Nelumbo nucifera HOM05D000001 ORTHO05D009729 3.7e-09 65.5 49 63.3
Psat7g095280 Pisum sativum HOM05D000001 ORTHO05D009729 3.7e-09 65.5 43 67.4
THA.LOC104807384 Tarenaya hassleriana HOM05D000001 ORTHO05D009729 3.7e-09 65.5 49 63.3
PSO210G3403 Papaver somniferum HOM05D000001 ORTHO05D009729 4.9e-09 65.1 47 59.6
Sp2g02380 Schrenkiella parvula HOM05D000001 ORTHO05D009729 4.9e-09 65.1 49 65.3
Sed0007347 Sechium edule HOM05D000001 ORTHO05D009729 4.9e-09 65.1 49 65.3
Actinidia18032 Actinidia chinensis HOM05D000001 ORTHO05D009729 6.4e-09 64.7 50 58.0
CARHR049870 Cardamine hirsuta HOM05D000001 ORTHO05D009729 6.4e-09 64.7 47 63.8
Manes.04G070067 Manihot esculenta HOM05D000001 ORTHO05D009729 6.4e-09 64.7 46 63.0
PSO170G1382 Papaver somniferum HOM05D000001 ORTHO05D009729 8.3e-09 64.3 47 59.6
TPR.G31643 Trifolium pratense HOM05D000001 ORTHO05D009729 8.3e-09 64.3 43 67.4
HanXRQChr07g0194361 Helianthus annuus HOM05D000001 ORTHO05D009729 1.1e-08 63.9 47 59.6
Lj2C41T16 Lonicera japonica HOM05D000001 ORTHO05D009729 1.4e-08 63.5 46 60.9
AUR62033588 Chenopodium quinoa HOM05D000001 ORTHO05D009729 1.9e-08 63.2 50 60.0
AL2G13670 Arabidopsis lyrata HOM05D000001 ORTHO05D009729 3.2e-08 62.4 49 63.3
AT1G62260 Arabidopsis thaliana HOM05D000001 ORTHO05D009729 3.2e-08 62.4 49 63.3
ClCG02G003860 Citrullus lanatus HOM05D000001 ORTHO05D009729 3.2e-08 62.4 49 61.2
Phvul.002G202800 Phaseolus vulgaris HOM05D000001 ORTHO05D009729 3.2e-08 62.4 43 65.1
CsaV3_7G001270 Cucumis sativus L. HOM05D000001 ORTHO05D009729 4.1e-08 62.0 51 60.8
Medtr4g094402 Medicago truncatula HOM05D000001 ORTHO05D009729 4.1e-08 62.0 42 66.7
EL10Ac7g17002 Beta vulgaris HOM05D000001 ORTHO05D009729 5.4e-08 61.6 46 60.9
TAR381G0390 Trochodendron aralioides HOM05D000001 ORTHO05D009729 5.4e-08 61.6 51 58.8
VMungo0251G2506 Vigna mungo HOM05D000001 ORTHO05D009729 7.1e-08 61.2 43 62.8
BcaC04g22372 Brassica carinata HOM05D000001 ORTHO05D009729 1.2e-07 60.5 49 59.2
C09p20040 Brassica napus HOM05D000001 ORTHO05D009729 1.2e-07 60.5 49 59.2
BolC9t54912H Brassica oleracea HOM05D000001 ORTHO05D009729 1.2e-07 60.5 49 59.2
Cpa.g.sc20.123 Carica papaya HOM05D000001 ORTHO05D009729 2.1e-07 59.7 53 52.8
AUR62037883 Chenopodium quinoa HOM05D000001 ORTHO05D009729 2.7e-07 59.3 50 56.0
Ah.08g211000 Amaranthus hybridus HOM05D000001 ORTHO05D009729 3.5e-07 58.9 49 55.1
Ca_18318_v3 Cicer arietinum L. HOM05D001759 ORTHO05D009729 4.6e-07 58.5 43 62.8
Eucgr.G01798 Eucalyptus grandis HOM05D000001 ORTHO05D009729 4.6e-07 58.5 35 74.3
Lsat_1_v5_gn_2_108000 Lactuca sativa HOM05D000001 ORTHO05D009729 4.6e-07 58.5 50 50.0
Migut.D02055 Erythranthe guttata HOM05D000001 ORTHO05D009729 6.0e-07 58.2 48 54.2
MBI05_g00410_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009729 7.8e-07 57.8 34 73.5
Dinv14133 Davidia involucrata HOM05D000001 ORTHO05D009729 1.0e-06 57.4 53 54.7
Oeu029008.1 Olea europaea HOM05D000001 ORTHO05D011775 1.0e-06 57.4 49 55.1
Ca_20403_v3 Cicer arietinum L. HOM05D000001 ORTHO05D011775 1.3e-06 57.0 46 58.7
Lalb_Chr07g0189211 Lupinus albus HOM05D000001 ORTHO05D009729 1.3e-06 57.0 47 66.0
GSVIVG01023966001 Vitis vinifera HOM05D000001 ORTHO05D009729 1.3e-06 57.0 47 55.3
Aa31LG8G7420 Aethionema arabicum HOM05D000001 ORTHO05D009729 3.0e-06 55.8 49 55.1
Aqoxy5G01086 Aquilegia oxysepala HOM05D000001 ORTHO05D009729 3.9e-06 55.5 47 55.3
PGR042G0891 Punica granatum HOM05D000001 ORTHO05D009729 8.6e-06 54.3 49 55.1
SGA_v2.0_scaffold122G33233 Striga asiatica HOM05D000001 ORTHO05D000003 8.6e-06 54.3 30 73.3


User provided reference genes

Program Settings