Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.8e-87 325.9 163 100.0
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 1.0e-58 230.3 159 77.4
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.3e-58 229.2 116 97.4
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 4.1e-55 218.4 118 90.7
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.6e-54 215.7 116 92.2
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 3.5e-54 215.3 118 89.8
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 3.6e-51 205.3 116 87.1
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 4.7e-51 204.9 116 82.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 1.8e-50 203.0 115 83.5
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 5.2e-50 201.4 116 82.8
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 5.2e-50 201.4 116 82.8
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 6.7e-50 201.1 115 83.5
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 6.7e-50 201.1 116 81.9
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.1e-49 200.3 114 83.3
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 2.0e-49 199.5 116 81.9
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.0e-49 199.5 111 85.6
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.6e-49 199.1 116 81.0
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 4.4e-49 198.4 116 82.8
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 5.7e-49 198.0 116 81.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 7.4e-49 197.6 116 82.8
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 9.7e-49 197.2 116 81.9
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.7e-48 196.4 112 82.1
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.2e-48 196.1 110 84.5
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 2.8e-48 195.7 116 81.9
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 2.8e-48 195.7 116 79.3
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 2.8e-48 195.7 116 81.0
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.7e-48 195.3 112 81.2
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 3.7e-48 195.3 115 81.7
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 4.8e-48 194.9 111 82.0
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 6.3e-48 194.5 123 77.2
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 6.3e-48 194.5 117 79.5
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 8.2e-48 194.1 116 80.2
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.1e-47 193.7 116 79.3
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-47 193.7 119 79.0
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.1e-47 193.7 114 81.6
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.1e-47 193.7 114 80.7
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.4e-47 193.4 111 81.1
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.4e-47 193.4 124 75.8
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.8e-47 193.0 114 80.7
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 1.8e-47 193.0 114 79.8
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.4e-47 192.6 116 80.2
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 3.1e-47 192.2 114 80.7
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 3.1e-47 192.2 112 80.4
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 4.1e-47 191.8 114 79.8
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.1e-47 191.8 111 81.1
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 4.1e-47 191.8 111 81.1
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 7.0e-47 191.0 112 79.5
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 7.0e-47 191.0 116 79.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 7.0e-47 191.0 115 77.4
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.0e-47 191.0 114 79.8
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 9.1e-47 190.7 121 75.2
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.0e-46 189.5 112 81.2
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.3e-45 186.8 116 77.6
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 2.9e-45 185.7 121 72.7
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 3.8e-45 185.3 112 75.9
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 5.0e-45 184.9 111 79.3
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 5.0e-45 184.9 118 76.3
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 5.0e-45 184.9 116 75.9
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 1.1e-44 183.7 116 75.9
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.1e-44 183.7 114 75.4
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.9e-44 183.0 118 72.0
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 2.5e-44 182.6 116 73.3
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 4.2e-44 181.8 116 76.7
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 7.2e-44 181.0 113 77.0
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.1e-43 179.5 113 74.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 2.1e-43 179.5 140 66.4
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 2.7e-43 179.1 116 73.3
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 2.7e-43 179.1 127 70.9
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 3.6e-43 178.7 113 74.3
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 6.1e-43 177.9 111 73.9
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.0e-42 177.2 111 74.8
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.4e-42 176.8 122 68.0
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.4e-42 176.8 116 74.1
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.8e-42 176.4 112 75.9
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.8e-42 176.4 111 73.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 3.0e-42 175.6 111 73.9
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 3.0e-42 175.6 111 74.8
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 3.0e-42 175.6 114 73.7
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 4.0e-42 175.3 111 73.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 4.0e-42 175.3 124 65.3
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 4.0e-42 175.3 116 71.6
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 6.8e-42 174.5 114 71.9
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 8.8e-42 174.1 111 73.0
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.2e-41 173.7 111 73.0
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.2e-41 173.7 111 72.1
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.2e-41 173.7 111 72.1
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.0e-41 172.9 111 72.1
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 2.0e-41 172.9 111 71.2
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 3.4e-41 172.2 86 94.2
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.3e-40 170.2 115 72.2
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.2e-40 169.5 115 71.3
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 4.8e-40 168.3 116 69.8
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 8.3e-40 167.5 111 71.2
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 8.3e-40 167.5 111 71.2
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.2e-38 163.7 126 63.5
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 2.0e-38 162.9 111 69.4
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 5.9e-38 161.4 132 60.6
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 7.7e-38 161.0 108 69.4
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 2.2e-37 159.5 111 68.5
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.5e-36 156.8 110 65.5
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 3.2e-36 155.6 109 67.0
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 4.2e-36 155.2 102 67.6
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 7.2e-36 154.5 108 67.6
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 2.7e-35 152.5 96 74.0
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.6e-35 152.1 86 80.2
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 2.3e-34 149.4 108 64.8
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.2e-33 147.1 110 60.9
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 2.0e-33 146.4 134 57.5
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 4.8e-32 141.7 101 67.3
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.1e-31 138.7 181 45.3
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 5.4e-31 138.3 86 72.1
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 5.4e-31 138.3 107 66.4
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 1.6e-30 136.7 100 71.0
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.0e-30 136.3 66 97.0
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 4.7e-27 125.2 87 71.3
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.4e-26 123.6 88 67.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.4e-26 123.6 105 56.2
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.3e-26 122.9 59 96.6
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 4.0e-26 122.1 106 54.7
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 2.2e-24 116.3 70 82.9
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 6.3e-24 114.8 112 46.4
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 5.4e-23 111.7 75 70.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 5.4e-23 111.7 75 70.7
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 7.0e-23 111.3 72 68.1
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.6e-22 110.2 70 80.0
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 3.5e-22 109.0 112 50.0
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.9e-22 108.2 67 73.1
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.9e-21 105.9 96 47.9
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.2e-19 100.5 55 81.8
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 5.8e-17 91.7 78 57.7
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.7e-16 90.1 61 72.1
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.7e-16 90.1 50 92.0
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 2.2e-16 89.7 52 82.7
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 7.8e-14 81.3 54 75.9
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 8.3e-08 61.2 60 55.0
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.9e-07 60.1 58 48.3
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 1.2e-06 57.4 37 67.6


User provided reference genes

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