Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.4e-223 779.2 391 100.0
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 6.7e-213 743.8 394 94.4
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 6.7e-213 743.8 394 94.7
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 3.0e-205 718.4 394 89.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.4e-199 699.5 397 87.9
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 2.7e-198 695.3 394 87.8
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.4e-194 682.9 393 85.8
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 2.3e-189 665.6 394 82.7
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 6.7e-189 664.1 393 83.2
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.2e-185 653.3 394 82.5
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 3.0e-181 638.6 407 79.1
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.4e-178 629.8 404 79.0
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 5.4e-178 627.9 388 80.4
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 2.7e-177 625.5 404 79.0
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 3.5e-177 625.2 388 81.4
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 5.9e-177 624.4 401 78.6
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 8.5e-176 620.5 388 79.1
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.1e-175 620.2 377 85.4
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.1e-175 620.2 403 77.4
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 1.5e-175 619.8 407 77.1
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 5.5e-175 617.8 404 76.5
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 9.4e-175 617.1 405 76.5
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.6e-174 616.3 401 77.3
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.7e-174 615.5 380 80.5
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 1.4e-173 613.2 400 77.5
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 4.0e-173 611.7 393 76.8
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 6.8e-173 610.9 403 76.4
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 6.8e-173 610.9 390 77.4
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 8.8e-173 610.5 396 75.8
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.2e-172 610.1 370 78.6
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.5e-172 609.8 398 76.4
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.5e-172 609.8 393 76.8
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.5e-172 609.8 398 76.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 5.7e-172 607.8 403 75.9
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 9.8e-172 607.1 403 75.9
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 3.7e-171 605.1 394 76.4
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 4.9e-171 604.7 399 75.2
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.4e-170 603.2 399 75.2
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.4e-170 603.2 377 83.3
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.2e-169 600.1 400 75.2
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.2e-169 600.1 359 79.7
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 1.2e-169 600.1 405 74.6
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.6e-169 599.7 393 75.8
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 5.9e-169 597.8 356 81.2
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 5.9e-169 597.8 363 79.9
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.3e-168 596.7 429 71.8
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.8e-168 595.1 398 74.4
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 5.0e-168 594.7 402 74.6
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 6.6e-168 594.3 400 76.0
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 8.6e-168 594.0 391 74.2
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.1e-167 593.6 359 79.9
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.5e-167 593.2 409 73.3
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.5e-167 593.2 400 75.0
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.5e-167 593.2 395 73.4
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 2.5e-167 592.4 353 81.3
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 3.3e-167 592.0 347 82.7
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 3.3e-167 592.0 359 79.4
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 4.2e-167 591.7 394 74.1
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.2e-166 590.1 394 73.4
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.6e-166 589.7 399 74.9
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 2.1e-166 589.3 397 72.5
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 2.1e-166 589.3 392 74.5
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 2.8e-166 589.0 392 74.2
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 4.7e-166 588.2 358 80.2
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 8.0e-166 587.4 398 75.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 8.0e-166 587.4 406 74.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.0e-165 587.0 376 77.1
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 8.9e-165 583.9 403 74.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.0e-164 582.8 347 80.4
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 3.4e-164 582.0 362 79.0
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 5.7e-164 581.3 391 73.7
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 7.5e-164 580.9 403 73.2
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 9.8e-164 580.5 391 73.9
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 2.9e-163 578.9 403 73.0
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 8.3e-163 577.4 347 81.0
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.1e-162 577.0 367 77.9
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.4e-162 576.6 346 81.8
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.8e-162 576.2 403 74.4
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.8e-162 576.2 383 74.7
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 5.4e-162 574.7 354 80.5
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 9.2e-162 573.9 403 73.4
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.2e-161 573.5 402 72.1
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.6e-161 573.2 353 79.6
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 2.7e-161 572.4 420 70.0
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 3.9e-160 568.5 381 74.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.5e-159 566.6 399 73.2
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 7.3e-159 564.3 361 77.6
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 9.5e-159 563.9 401 70.8
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 2.1e-158 562.8 399 72.4
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 6.2e-158 561.2 327 83.2
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 6.2e-158 561.2 352 79.3
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.0e-157 558.5 438 67.6
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 5.4e-154 548.1 344 76.2
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 7.0e-154 547.7 349 77.1
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 9.2e-154 547.4 403 70.7
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.6e-153 546.6 390 69.5
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 2.7e-153 545.8 382 72.3
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 4.6e-153 545.0 314 83.8
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 3.9e-152 542.0 351 75.8
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 3.9e-152 542.0 353 74.8
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 6.6e-152 541.2 349 76.2
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.3e-151 538.9 402 67.9
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 5.6e-151 538.1 389 70.4
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.1e-150 536.2 394 69.0
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 3.6e-150 535.4 349 75.6
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 2.3e-149 532.7 314 82.2
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 8.9e-149 530.8 355 71.3
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 4.9e-147 525.0 366 73.2
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 9.2e-146 520.8 344 73.3
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.2e-145 520.4 355 71.8
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 5.1e-144 515.0 463 61.1
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.4e-141 506.9 386 72.3
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 3.1e-141 505.8 343 70.0
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.1e-137 493.0 573 49.2
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 6.0e-137 491.5 400 65.8
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 5.8e-132 474.9 293 79.5
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 2.4e-130 469.5 346 66.5
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 5.4e-130 468.4 344 65.4
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 4.3e-119 432.2 275 78.2
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 7.7e-76 288.5 194 75.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 8.2e-70 268.5 374 44.9
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.4e-69 267.7 147 85.7
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.3e-64 250.4 208 60.1
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.5e-58 230.3 278 50.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 5.4e-53 212.6 143 72.0
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 9.2e-53 211.8 187 62.0
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 1.7e-43 181.0 112 79.5
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.3e-38 164.9 112 72.3
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 2.5e-34 150.6 353 30.0
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.7e-33 146.4 81 84.0
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.4e-29 134.8 132 56.1
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.1e-25 120.9 80 71.2
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.5e-18 98.2 53 84.9
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 6.0e-12 76.3 94 46.8
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 6.6e-11 72.8 47 70.2
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 9.6e-10 68.9 57 61.4


User provided reference genes

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