Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.2e-78 295.0 152 100.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.7e-32 142.5 81 92.6
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.1e-30 137.1 81 88.9
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.1e-30 137.1 81 88.9
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.1e-30 137.1 81 88.9
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.5e-30 136.0 80 90.0
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 6.1e-29 131.3 76 88.2
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 8.0e-29 131.0 76 86.8
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.4e-28 130.2 76 88.2
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.3e-28 129.4 76 88.2
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.3e-28 129.4 76 88.2
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.3e-28 129.4 76 88.2
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 3.0e-28 129.0 76 86.8
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.5e-27 126.7 76 82.9
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.0e-27 126.3 76 85.5
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.0e-27 126.3 76 85.5
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 2.0e-27 126.3 76 82.9
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 2.0e-27 126.3 76 84.2
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 3.4e-27 125.6 76 84.2
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 3.4e-27 125.6 76 84.2
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 3.4e-27 125.6 76 84.2
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 3.4e-27 125.6 76 84.2
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 4.4e-27 125.2 76 84.2
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.3e-26 123.6 76 82.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.3e-26 123.6 76 82.9
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.3e-26 123.6 76 81.6
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 2.8e-26 122.5 76 82.9
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.8e-26 122.5 76 78.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 3.7e-26 122.1 76 80.3
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 4.8e-26 121.7 77 79.2
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 6.3e-26 121.3 76 80.3
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 6.3e-26 121.3 76 78.9
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 6.3e-26 121.3 76 81.6
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 6.3e-26 121.3 76 77.6
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 8.3e-26 120.9 76 80.3
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.1e-25 120.6 76 78.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.4e-25 120.2 76 78.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.4e-25 120.2 76 80.3
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.8e-25 119.8 76 80.3
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 2.4e-25 119.4 76 78.9
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 3.1e-25 119.0 76 80.3
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 3.1e-25 119.0 76 78.9
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 4.1e-25 118.6 80 72.5
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 5.4e-25 118.2 75 81.3
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 7.0e-25 117.9 76 77.6
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 9.1e-25 117.5 76 78.9
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.2e-24 117.1 76 76.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.2e-24 117.1 76 78.9
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.2e-24 117.1 75 77.3
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.6e-24 116.7 76 80.3
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.6e-24 116.7 76 77.6
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.0e-24 116.3 76 78.9
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 2.7e-24 115.9 76 76.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 2.7e-24 115.9 79 74.7
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 3.5e-24 115.5 76 73.7
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 3.5e-24 115.5 76 76.3
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 3.5e-24 115.5 76 76.3
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 5.9e-24 114.8 76 76.3
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 5.9e-24 114.8 76 75.0
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 7.7e-24 114.4 75 77.3
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.0e-23 114.0 76 75.0
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.2e-23 112.8 76 76.3
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.9e-23 112.5 76 71.1
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.9e-23 112.5 76 71.1
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 3.8e-23 112.1 76 72.4
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.1e-22 110.5 72 79.2
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.5e-22 110.2 76 71.1
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.5e-22 110.2 74 73.0
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.5e-22 109.4 76 68.4
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.5e-22 109.4 76 68.4
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 3.2e-22 109.0 74 73.0
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 4.2e-22 108.6 75 70.7
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 9.5e-22 107.5 75 69.3
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 9.5e-22 107.5 90 63.3
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.2e-21 107.1 76 68.4
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.6e-21 106.7 76 69.7
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.1e-21 106.3 75 70.7
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.8e-21 105.9 75 68.0
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 4.7e-21 105.1 75 66.7
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 5.2e-20 101.7 79 67.1
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 5.2e-20 101.7 80 65.0
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 8.8e-20 100.9 76 65.8
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 8.8e-20 100.9 76 65.8
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.4e-19 99.0 81 67.9
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 5.7e-19 98.2 61 78.7
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-18 97.1 76 68.4
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 2.8e-18 95.9 80 58.8
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 6.3e-18 94.7 75 64.0
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.4e-17 93.6 80 52.5
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.8e-17 93.2 75 65.3
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 7.0e-17 91.3 76 56.6
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 9.2e-17 90.9 80 61.2
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-15 87.0 87 57.5
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-15 86.7 106 52.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.9e-15 85.9 79 57.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.9e-15 85.9 79 57.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 2.5e-14 82.8 75 56.0
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.5e-14 82.8 76 59.2
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 2.5e-14 82.8 76 53.9
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 3.3e-14 82.4 75 52.0
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.3e-14 82.0 76 50.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 9.5e-14 80.9 77 61.0
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.8e-13 79.3 76 60.5
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 3.6e-13 79.0 52 78.8
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.4e-12 77.0 72 58.3
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.0e-12 75.9 49 77.6
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 3.0e-12 75.9 49 75.5
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 2.0e-11 73.2 75 48.0
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 4.4e-11 72.0 78 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 2.2e-10 69.7 70 50.0
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 8.3e-10 67.8 78 50.0
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.1e-09 67.4 76 52.6
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 2.4e-09 66.2 42 69.0
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 3.2e-09 65.9 75 48.0
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.2e-08 63.9 77 48.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.6e-08 63.5 79 48.1
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.7e-08 62.8 102 41.2
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 5.9e-08 61.6 78 43.6
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 5.9e-08 61.6 78 43.6
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.3e-07 60.5 49 61.2
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.7e-07 60.1 139 33.8
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.9e-07 58.9 78 42.3
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.1e-06 57.4 81 43.2
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 5.6e-06 55.1 82 40.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 9.5e-06 54.3 47 57.4


User provided reference genes

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