Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 9.9e-62 240.0 123 100.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-47 193.4 121 87.6
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 4.9e-45 184.5 121 79.3
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 9.3e-36 153.7 120 70.8
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 4.6e-35 151.4 121 69.4
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.0e-34 150.2 121 68.6
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 1.3e-34 149.8 121 65.3
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 8.7e-34 147.1 121 66.9
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.5e-33 146.4 110 69.1
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.5e-33 146.4 118 66.9
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 1.5e-33 146.4 118 66.9
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.9e-33 146.0 121 65.3
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.9e-33 146.0 121 65.3
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 3.3e-33 145.2 121 63.6
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 3.3e-33 145.2 121 65.3
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 5.6e-33 144.4 121 63.6
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 5.6e-33 144.4 120 65.8
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 9.6e-33 143.7 118 65.3
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.3e-32 143.3 121 62.8
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.6e-32 142.9 121 66.1
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.1e-32 142.5 121 62.8
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.1e-32 142.5 121 66.9
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 2.8e-32 142.1 121 61.2
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.8e-32 142.1 121 66.9
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.8e-32 142.1 121 66.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 2.8e-32 142.1 121 61.2
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.8e-32 141.4 122 62.3
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.2e-32 141.0 122 64.8
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 8.2e-32 140.6 121 62.0
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-31 140.2 122 63.1
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.1e-31 140.2 122 63.1
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.1e-31 140.2 122 63.1
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.1e-31 140.2 122 63.1
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.4e-31 139.8 122 62.3
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.4e-31 139.8 122 62.3
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.4e-31 139.8 121 60.3
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.8e-31 139.4 122 62.3
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 2.4e-31 139.0 121 62.8
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 2.4e-31 139.0 117 65.0
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 3.1e-31 138.7 122 62.3
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 3.1e-31 138.7 121 65.3
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 4.0e-31 138.3 122 63.1
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 5.3e-31 137.9 122 66.4
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 5.3e-31 137.9 121 61.2
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 6.9e-31 137.5 122 61.5
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 6.9e-31 137.5 121 58.7
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 6.9e-31 137.5 107 69.2
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 6.9e-31 137.5 121 60.3
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 6.9e-31 137.5 121 61.2
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 9.0e-31 137.1 121 62.8
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 2.0e-30 136.0 117 62.4
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 2.6e-30 135.6 121 60.3
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 4.5e-30 134.8 121 61.2
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 4.5e-30 134.8 121 61.2
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 7.6e-30 134.0 111 66.7
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.3e-29 133.3 124 58.9
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.2e-29 132.5 123 61.0
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 4.9e-29 131.3 122 56.6
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 6.5e-29 131.0 119 60.5
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.4e-28 129.8 108 64.8
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.4e-28 129.8 121 58.7
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.4e-28 129.8 121 57.9
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.5e-28 129.0 121 57.9
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.5e-28 129.0 110 65.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.2e-28 128.6 118 62.7
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 3.2e-28 128.6 118 57.6
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 3.2e-28 128.6 118 57.6
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 9.3e-28 127.1 121 56.2
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 9.3e-28 127.1 106 66.0
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.2e-27 126.7 110 60.9
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.2e-27 126.7 110 60.9
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.6e-27 126.3 108 62.0
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.6e-27 126.3 108 62.0
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 2.1e-27 125.9 106 64.2
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 2.1e-27 125.9 117 62.4
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 2.7e-27 125.6 121 59.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.7e-27 125.6 120 60.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 3.5e-27 125.2 120 59.2
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 3.5e-27 125.2 122 59.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.5e-27 125.2 124 53.2
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 3.5e-27 125.2 107 62.6
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 4.6e-27 124.8 120 58.3
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 7.9e-27 124.0 108 61.1
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.0e-26 123.6 109 60.6
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.0e-26 123.6 143 49.7
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.0e-26 123.6 121 58.7
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 3.9e-26 121.7 107 61.7
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 5.1e-26 121.3 121 57.0
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.1e-26 121.3 115 61.7
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.1e-26 121.3 132 52.3
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-25 119.8 122 55.7
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-25 119.8 115 60.9
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 4.3e-25 118.2 117 55.6
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.3e-25 118.2 118 53.4
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 7.4e-25 117.5 102 60.8
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 9.7e-25 117.1 122 52.5
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.3e-24 116.7 105 62.9
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 2.2e-24 115.9 120 55.8
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.2e-24 114.0 92 65.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 6.9e-23 110.9 117 54.7
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 9.0e-23 110.5 66 87.9
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.4e-22 108.6 105 56.2
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.9e-21 105.5 122 50.8
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.9e-20 102.8 119 50.4
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.6e-19 99.8 106 51.9
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 6.1e-19 97.8 100 50.0
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.0e-18 97.1 108 50.0
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.3e-18 95.9 52 92.3
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 5.1e-18 94.7 66 69.7
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.1e-18 94.7 105 52.4
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.9e-17 92.8 117 46.2
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.9e-17 92.8 73 68.5
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.5e-17 92.4 116 45.7
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.5e-17 92.4 117 45.3
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.5e-17 92.4 105 47.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 4.3e-17 91.7 117 45.3
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.7e-16 89.7 102 47.1
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.7e-16 89.7 102 49.0
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 2.8e-16 89.0 125 44.0
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 4.8e-16 88.2 116 45.7
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 4.8e-16 88.2 119 44.5
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.8e-16 88.2 93 49.5
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.3e-16 87.8 101 49.5
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.8e-15 86.3 66 65.2
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 7.7e-14 80.9 115 44.3
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 2.2e-13 79.3 121 44.6
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 2.2e-13 79.3 110 42.7
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 5.0e-13 78.2 101 49.5
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.9e-12 76.3 81 54.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 3.2e-12 75.5 121 40.5
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 4.2e-12 75.1 118 37.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 4.2e-12 75.1 83 49.4
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.0e-10 68.9 92 48.9
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.9e-10 68.6 95 40.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.6e-09 65.9 100 41.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-09 65.9 101 36.6
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 9.7e-09 63.9 98 41.8
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-07 60.1 33 90.9
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.1e-07 58.9 48 66.7
RcHm_v2.0_Chr7g0198541 Rosa chinensis HOM05D004908 ORTHO05D342725 2.6e-06 55.8 30 90.0


User provided reference genes

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