Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0258581 Rosa chinensis HOM05D000108 ORTHO05D010239 1.5e-156 556.2 294 100.0
FvH4_5g35240 Fragaria vesca HOM05D000108 ORTHO05D010239 8.3e-91 337.8 253 76.7
FAN13G2627 Fragaria x ananassa HOM05D000108 ORTHO05D010239 3.2e-90 335.9 264 73.9
FAN08G2432 Fragaria x ananassa HOM05D000108 ORTHO05D010239 4.6e-89 332.0 253 75.5
FAN18G4321 Fragaria x ananassa HOM05D000108 ORTHO05D010239 3.9e-88 328.9 257 73.9
RcHm_v2.0_Chr6g0258621 Rosa chinensis HOM05D000108 ORTHO05D010239 2.6e-84 316.2 201 89.6
RcHm_v2.0_Chr7g0236371 Rosa chinensis HOM05D000108 ORTHO05D010239 3.5e-81 305.8 254 70.1
Prupe.1G532100 Prunus persica HOM05D000108 ORTHO05D010239 2.3e-56 223.4 239 60.7
RcHm_v2.0_Chr6g0258571 Rosa chinensis HOM05D000108 ORTHO05D010239 3.3e-55 219.5 155 80.0
MD15G1385400 Malus domestica HOM05D000108 ORTHO05D010239 1.3e-54 217.6 267 54.7
MD08G1198100 Malus domestica HOM05D000108 ORTHO05D010239 8.7e-48 194.9 208 61.1
CiPaw.07G165500 Carya illinoinensis HOM05D000108 ORTHO05D010239 3.5e-41 172.9 253 44.3
Cfa013796 Carpinus fangiana HOM05D000108 ORTHO05D010239 1.1e-34 151.4 268 42.9
QL09p017810 Quercus lobata HOM05D000108 ORTHO05D010239 1.4e-34 151.0 253 41.5
Lj1g0020667 Lotus japonicus HOM05D000108 ORTHO05D010239 1.4e-29 134.4 256 40.2
Medtr3g100230 Medicago truncatula HOM05D000108 ORTHO05D010239 7.7e-28 128.6 256 40.2
VMungo1309G0378 Vigna mungo HOM05D000108 ORTHO05D010239 1.7e-27 127.5 256 39.1
Duzib093G0215 Durio zibethinus HOM05D000108 ORTHO05D010239 8.5e-27 125.2 246 37.8
arahy.Tifrunner.gnm1.ann1.8QVC7G Arachis hypogaea HOM05D000108 ORTHO05D010239 1.4e-26 124.4 245 38.4
Lalb_Chr08g0242521 Lupinus albus HOM05D000108 ORTHO05D010239 2.5e-26 123.6 253 37.9
arahy.Tifrunner.gnm1.ann1.CYPG82 Arachis hypogaea HOM05D000108 ORTHO05D010239 5.5e-26 122.5 245 37.6
Ca_23441_v3 Cicer arietinum L. HOM05D000108 ORTHO05D010239 1.6e-25 120.9 268 36.6
Haze_22459 Corylus avellana HOM05D000108 ORTHO05D010239 2.7e-25 120.2 268 36.9
CANSAT25G3032 Cannabis sativa HOM05D000108 ORTHO05D010239 3.6e-25 119.8 261 38.7
Psat5g048840 Pisum sativum HOM05D000108 ORTHO05D010239 6.1e-25 119.0 236 35.6
PGR031G1243 Punica granatum HOM05D000108 ORTHO05D010239 6.1e-25 119.0 276 35.1
COL.COLO4_35248 Corchorus olitorius HOM05D000108 ORTHO05D010239 1.4e-24 117.9 250 34.4
Phvul.009G036700 Phaseolus vulgaris HOM05D000108 ORTHO05D010239 3.0e-24 116.7 238 36.1
MELO3C011086.2 Cucumis melo HOM05D000108 ORTHO05D010239 1.1e-23 114.8 212 38.7
CsaV3_2G030260 Cucumis sativus L. HOM05D000108 ORTHO05D010239 1.1e-23 114.8 212 39.2
Potri.002G106100 Populus trichocarpa HOM05D000108 ORTHO05D010239 1.1e-23 114.8 234 39.7
Sed0019033 Sechium edule HOM05D000108 ORTHO05D010239 2.6e-23 113.6 217 37.3
Gohir.A06G032300 Gossypium hirsutum HOM05D000108 ORTHO05D010239 7.4e-23 112.1 199 37.7
Sed0002143 Sechium edule HOM05D000108 ORTHO05D010239 1.7e-22 110.9 220 35.9
Sabra02G0083400 Salix brachista HOM05D000108 ORTHO05D010239 3.7e-22 109.8 252 37.3
Manes.18G058700 Manihot esculenta HOM05D000108 ORTHO05D010239 6.3e-22 109.0 212 36.8
Atru.chr13.1010 Acer truncatum HOM05D000108 ORTHO05D010239 1.4e-21 107.8 195 40.5
Gohir.D06G031500 Gossypium hirsutum HOM05D000108 ORTHO05D010239 1.8e-21 107.5 190 38.4
Gorai.010G034700 Gossypium raimondii HOM05D000108 ORTHO05D010239 4.1e-21 106.3 245 33.9
Glyma.06G096600 Glycine max HOM05D000108 ORTHO05D010239 1.2e-20 104.8 239 37.7
Ciclev10001077m.g Citrus clementina HOM05D000108 ORTHO05D010239 1.5e-20 104.4 263 34.6
Eucgr.F02150 Eucalyptus grandis HOM05D000108 ORTHO05D010239 4.5e-20 102.8 258 34.5
ClCG08G011670 Citrullus lanatus HOM05D000108 ORTHO05D010239 5.9e-20 102.4 195 37.4
TWI56G1192 Tripterygium wilfordii HOM05D000108 ORTHO05D010239 5.9e-20 102.4 239 35.6
GSVIVG01009178001 Vitis vinifera HOM05D000108 ORTHO05D001407 3.8e-19 99.8 370 28.9
Haze_22458 Corylus avellana HOM05D000108 ORTHO05D001407 3.2e-18 96.7 342 30.1
TAR625G0090 Trochodendron aralioides HOM05D000108 ORTHO05D001407 3.6e-17 93.2 112 51.8
Sabra02G0083300 Salix brachista HOM05D000108 ORTHO05D001407 3.0e-16 90.1 406 27.1
Cpa.g.sc21.19 Carica papaya HOM05D000108 ORTHO05D001407 5.2e-16 89.4 386 26.7
Lalb_Chr11g0064981 Lupinus albus HOM05D000108 ORTHO05D010239 1.1e-15 88.2 236 33.1
Duzib041G0116 Durio zibethinus HOM05D000108 ORTHO05D010239 5.7e-15 85.9 237 30.8
QL09p017790 Quercus lobata HOM05D000108 ORTHO05D001407 5.7e-15 85.9 383 28.2
Cfa013795 Carpinus fangiana HOM05D000108 ORTHO05D001407 9.7e-15 85.1 333 29.1
RcHm_v2.0_Chr7g0236691 Rosa chinensis HOM05D000108 ORTHO05D001407 1.3e-14 84.7 236 33.9
CiPaw.07G165600 Carya illinoinensis HOM05D000108 ORTHO05D001407 2.2e-14 84.0 268 32.8
FvH4_5g35340 Fragaria vesca HOM05D000108 ORTHO05D001407 4.8e-14 82.8 225 33.8
CANSAT25G3236 Cannabis sativa HOM05D000108 ORTHO05D001407 6.3e-14 82.4 249 32.5
Dinv44861 Davidia involucrata HOM05D000108 ORTHO05D001407 6.3e-14 82.4 253 32.8
FAN08G2169 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.3e-13 79.3 231 33.3
Prupe.1G532000 Prunus persica HOM05D000108 ORTHO05D001407 5.3e-13 79.3 247 30.0
FAN13G1922 Fragaria x ananassa HOM05D000108 ORTHO05D001407 9.1e-13 78.6 231 31.2
FAN18G4137 Fragaria x ananassa HOM05D000108 ORTHO05D001407 9.1e-13 78.6 231 33.3
Potri.002G106000 Populus trichocarpa HOM05D000108 ORTHO05D001407 9.1e-13 78.6 404 26.7
AT5G33300 Arabidopsis thaliana HOM05D000108 ORTHO05D010239 1.2e-12 78.2 186 31.2
FAN04G1245 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.2e-12 78.2 231 32.5
vmacro21339 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 2.0e-12 77.4 115 47.8
Dinv42613 Davidia involucrata HOM05D000108 ORTHO05D001407 2.6e-12 77.0 248 32.3
VMungo0647G1798 Vigna mungo HOM05D000108 ORTHO05D001407 4.5e-12 76.3 167 34.1
THA.LOC104799089 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 5.9e-12 75.9 255 29.8
CSS0046831 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 1.0e-11 75.1 177 36.7
Nitab4.5_0000131g0280 Nicotiana tabacum HOM05D000108 ORTHO05D001407 1.0e-11 75.1 187 35.3
TAR381G1095 Trochodendron aralioides HOM05D000108 ORTHO05D001407 1.0e-11 75.1 351 26.5
GSVIVG01009180001 Vitis vinifera HOM05D000108 ORTHO05D010239 1.0e-11 75.1 252 30.6
TWI36G0449 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 2.2e-11 73.9 265 29.4
Nn5g29882 Nelumbo nucifera HOM05D000108 ORTHO05D001407 6.5e-11 72.4 268 27.6
Aa31csc22G170 Aethionema arabicum HOM05D000108 ORTHO05D010239 8.5e-11 72.0 190 31.6
TPR.G6375 Trifolium pratense HOM05D000108 ORTHO05D010239 8.5e-11 72.0 270 28.9
Aqoxy6G00873 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 1.1e-10 71.6 142 38.7
CANSAT25G0259 Cannabis sativa HOM05D000108 ORTHO05D001407 1.1e-10 71.6 411 25.3
Lj1g0007620 Lotus japonicus HOM05D000108 ORTHO05D001407 1.1e-10 71.6 317 27.1
Potri.005G150800 Populus trichocarpa HOM05D000108 ORTHO05D001407 1.1e-10 71.6 391 25.6
Actinidia19242 Actinidia chinensis HOM05D000108 ORTHO05D001407 1.5e-10 71.2 106 43.4
AL7G43760 Arabidopsis lyrata HOM05D000108 ORTHO05D010239 1.5e-10 71.2 182 29.1
Glyma.02G214300 Glycine max HOM05D000108 ORTHO05D001407 1.5e-10 71.2 191 30.9
Rhsim06G0071700 Rhododendron simsii HOM05D000108 ORTHO05D001407 1.5e-10 71.2 108 43.5
Atru.chr13.1012 Acer truncatum HOM05D000108 ORTHO05D001407 3.2e-10 70.1 271 28.4
Carub.0007s3070 Capsella rubella HOM05D000108 ORTHO05D010239 3.2e-10 70.1 187 29.4
THA.LOC104801708 Tarenaya hassleriana HOM05D000108 ORTHO05D010239 4.2e-10 69.7 216 27.3
Ciclev10000037m.g Citrus clementina HOM05D000108 ORTHO05D001407 9.4e-10 68.6 252 29.0
Cc10_g15880 Coffea canephora HOM05D000108 ORTHO05D001407 9.4e-10 68.6 105 47.6
Glyma.14G181800 Glycine max HOM05D000108 ORTHO05D001407 1.2e-09 68.2 200 30.5
Actinidia10275 Actinidia chinensis HOM05D000108 ORTHO05D001407 2.1e-09 67.4 107 43.9
Eucgr.F00421 Eucalyptus grandis HOM05D000108 ORTHO05D001407 2.1e-09 67.4 290 26.9
Nitab4.5_0010888g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001407 2.7e-09 67.0 185 34.6
TWI12G0680 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 6.1e-09 65.9 381 25.2
Glyma.04G094700 Glycine max HOM05D000108 ORTHO05D010239 8.0e-09 65.5 95 48.4
Manes.18G058800 Manihot esculenta HOM05D000108 ORTHO05D001407 8.0e-09 65.5 112 42.9
Ah.05g171180 Amaranthus hybridus HOM05D000108 ORTHO05D001407 1.8e-08 64.3 251 28.3
Ca_05438_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 3.0e-08 63.5 260 30.4
Peaxi162Scf00454g00515 Petunia axillaris HOM05D000108 ORTHO05D010239 3.0e-08 63.5 92 41.3
AUR62019089 Chenopodium quinoa HOM05D000108 ORTHO05D001407 5.2e-08 62.8 374 23.0
MBI16_g12464_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001407 5.2e-08 62.8 280 27.5
Hund26815 Selenicereus undatus HOM05D000108 ORTHO05D001407 6.7e-08 62.4 254 27.6
Thecc.08G070900 Theobroma cacao HOM05D000108 ORTHO05D001407 1.2e-07 61.6 255 29.4
AUR62014346 Chenopodium quinoa HOM05D000108 ORTHO05D001407 1.5e-07 61.2 398 23.1
Gohir.A05G219500 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.5e-07 61.2 374 23.8
Aa31LG11G2370 Aethionema arabicum HOM05D000108 ORTHO05D001407 2.0e-07 60.8 109 38.5
BcaB04g18075 Brassica carinata HOM05D000108 ORTHO05D010239 2.0e-07 60.8 205 27.8
Oeu061173.1 Olea europaea HOM05D000108 ORTHO05D001407 2.0e-07 60.8 97 44.3
arahy.Tifrunner.gnm1.ann1.IE7ZNS Arachis hypogaea HOM05D000108 ORTHO05D001407 2.6e-07 60.5 116 39.7
Phvul.008G181800 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 2.6e-07 60.5 240 28.8
Gorai.009G229400 Gossypium raimondii HOM05D000108 ORTHO05D001407 4.4e-07 59.7 388 23.5
DCAR_012856 Daucus carota HOM05D000108 ORTHO05D001407 5.7e-07 59.3 96 42.7
Glyma.06G096200 Glycine max HOM05D000108 ORTHO05D001407 5.7e-07 59.3 209 28.2
arahy.Tifrunner.gnm1.ann1.X6V3MP Arachis hypogaea HOM05D000108 ORTHO05D001407 7.5e-07 58.9 142 36.6
Duzib093G0656 Durio zibethinus HOM05D000108 ORTHO05D001407 7.5e-07 58.9 254 28.3
PSO675G4151 Papaver somniferum HOM05D000108 ORTHO05D001407 9.7e-07 58.5 103 45.6
Duzib116G0269 Durio zibethinus HOM05D000108 ORTHO05D001407 1.3e-06 58.2 381 23.9
VMungo1080G0967 Vigna mungo HOM05D000108 ORTHO05D001407 1.7e-06 57.8 302 26.5
A03p46640 Brassica napus HOM05D000108 ORTHO05D001407 2.2e-06 57.4 128 35.2
BraA03t13788Z Brassica rapa HOM05D000108 ORTHO05D001407 2.2e-06 57.4 128 35.2
CARHR286840 Cardamine hirsuta HOM05D000108 ORTHO05D010239 2.2e-06 57.4 269 25.3
TPR.G34715 Trifolium pratense HOM05D000108 ORTHO05D001407 2.2e-06 57.4 240 29.2
Oeu039158.1 Olea europaea HOM05D000108 ORTHO05D010239 2.8e-06 57.0 97 42.3
Gohir.D05G222000 Gossypium hirsutum HOM05D000108 ORTHO05D001407 3.7e-06 56.6 388 23.2
Sed0014402 Sechium edule HOM05D000108 ORTHO05D001407 3.7e-06 56.6 108 36.1
Lalb_Chr08g0242511 Lupinus albus HOM05D000108 ORTHO05D001407 4.8e-06 56.2 98 37.8
ClCG11G014560 Citrullus lanatus HOM05D000108 ORTHO05D001407 6.3e-06 55.8 170 29.4
MELO3C003524.2 Cucumis melo HOM05D000108 ORTHO05D001407 6.3e-06 55.8 98 37.8
Os02g0742800 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001407 8.2e-06 55.5 98 36.7


User provided reference genes

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