Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 2129.8 1087 100.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1981.8 1087 93.0
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1954.5 1135 89.3
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1937.5 1088 91.6
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1936.0 1188 85.4
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1899.0 1089 88.4
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1799.6 1097 83.1
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1798.5 1097 83.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1796.9 1087 83.3
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1790.8 1099 83.2
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1789.6 1096 82.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1788.9 1097 82.9
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1787.3 1092 83.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1782.7 1118 81.0
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1776.9 1091 82.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1770.7 1092 82.0
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1762.7 1097 82.0
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1762.7 1097 81.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1761.5 1090 81.5
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1759.2 1096 81.4
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1758.0 1091 81.3
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1750.3 1113 80.1
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1749.9 1092 81.2
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1746.5 1095 81.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1738.8 1110 80.0
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1733.8 1059 82.5
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1728.8 1099 79.5
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1728.4 1015 83.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1725.7 1088 80.3
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1724.5 1093 79.1
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1724.5 1089 79.2
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1713.0 1094 79.8
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1707.2 1090 78.1
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1022 82.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1704.9 1046 81.7
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1704.1 1091 78.6
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1702.6 1045 81.0
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1702.6 1096 78.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1700.6 1133 76.3
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1700.6 1043 80.8
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1697.2 1096 77.7
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1012 82.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1694.5 1090 78.3
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1690.2 1098 77.9
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1690.2 1008 82.9
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1689.9 1093 78.0
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1687.9 1073 79.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1686.8 1102 77.0
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1685.2 1100 76.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1685.2 1087 77.3
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1007 81.8
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1065 79.5
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1682.5 1065 79.4
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1681.8 1087 77.0
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1681.4 1087 77.1
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1680.6 1079 78.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1680.6 1062 79.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1680.2 1063 79.2
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1680.2 1007 82.4
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1088 78.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1678.3 1097 76.8
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1677.5 1087 76.7
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1675.6 1108 77.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1675.2 1090 77.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1672.5 1064 79.5
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1066 79.5
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1671.4 1079 78.5
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1670.2 1091 77.1
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1669.8 1068 79.1
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1669.4 1066 79.5
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1084 78.0
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1666.4 1068 79.3
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1068 79.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1661.0 1085 78.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1661.0 1088 77.5
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1660.2 1085 77.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1656.0 1087 75.5
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1654.8 1087 76.6
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1653.6 1044 79.3
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1653.3 1091 77.1
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1651.0 1044 79.5
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1651.0 1086 76.2
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1112 74.8
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1646.7 1048 78.3
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1646.7 1089 77.1
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1032 79.6
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1644.8 1089 75.2
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1135 74.7
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1047 78.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1634.4 1040 79.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1053 77.6
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1092 74.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1088 76.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1093 75.8
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1093 75.5
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1621.3 1087 75.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1616.3 1088 74.6
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1027 78.9
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1611.7 1088 77.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1177 70.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1085 76.2
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1608.6 1206 69.6
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1057 76.1
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1017 78.3
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1120 73.4
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1549.6 1043 74.6
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1547.7 1126 71.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1517.3 969 77.4
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1508.8 914 80.6
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1501.9 869 84.6
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1461.4 1019 72.5
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1448.0 1005 70.1
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1427.2 1026 67.9
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1404.0 1107 68.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1402.9 1107 68.4
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1369.8 957 69.7
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1352.4 801 83.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1314.7 1076 64.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1290.0 756 86.5
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1285.4 1019 63.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1194.9 854 71.5
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1178.3 748 78.6
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1153.3 722 79.9
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1134.8 1071 54.8
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1126.7 1006 54.6
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1085.1 988 55.3
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 2.5e-310 1068.9 881 63.9
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.2e-307 1060.1 739 72.0
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.1e-276 957.2 805 62.1
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.6e-267 926.0 582 77.0
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.9e-267 924.9 777 59.8
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.0e-262 909.8 596 77.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.3e-242 843.2 974 44.9
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.1e-216 756.9 671 57.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.2e-212 743.0 642 61.2
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 6.2e-208 728.8 731 54.2
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.4e-198 696.0 424 80.7
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 4.9e-181 639.4 402 78.1
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.5e-179 633.3 510 67.6
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.8e-176 623.6 532 63.2
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.1e-175 619.8 413 75.1
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.2e-166 591.7 484 66.7
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.5e-166 591.3 347 87.6
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.2e-160 570.9 405 70.9
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 2.7e-155 553.9 393 67.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.8e-136 490.7 396 64.6
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.1e-132 478.8 326 71.8
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.5e-132 478.4 289 86.9
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.1e-127 460.7 309 71.5
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 4.1e-127 460.3 413 59.3
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.6e-110 405.2 991 29.9
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.6e-107 395.2 958 29.3
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 6.0e-102 376.7 227 81.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.3e-101 375.6 984 28.3
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.2e-95 354.4 896 29.5
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.9e-80 304.7 153 90.2
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 3.2e-63 248.1 222 59.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.9e-60 238.8 868 23.7
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.5e-52 211.8 310 43.5
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.8e-50 205.7 332 34.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.7e-46 191.8 220 55.9
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.3e-43 183.0 154 64.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.2e-43 182.2 124 71.8
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 9.1e-42 176.8 152 58.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.5e-41 176.0 184 51.1
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.2e-40 172.2 273 38.5
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 4.4e-36 157.9 461 27.3
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.3e-35 156.4 149 55.0
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.4e-34 152.9 134 61.2
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 5.5e-31 141.0 162 42.0
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 9.4e-31 140.2 425 28.0
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 2.8e-27 128.6 109 57.8
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.9e-24 118.6 99 61.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.6e-22 112.8 168 46.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 3.6e-22 111.7 287 26.1
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.8e-16 91.7 83 61.4
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 1.9e-15 89.4 80 57.5
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.6e-12 79.0 56 67.9
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 8.3e-11 73.9 51 66.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.4e-10 73.2 45 77.8
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.1e-10 72.0 185 35.7
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 4.5e-09 68.2 77 51.9
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.3e-08 66.6 36 86.1


User provided reference genes

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