Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.4e-38 161.8 85 100.0
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-30 135.6 79 88.6
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-28 128.6 79 81.0
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-28 128.6 79 81.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-28 128.6 79 81.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 3.8e-28 127.9 81 80.2
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.8e-28 127.9 79 81.0
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-27 126.3 79 79.7
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.1e-27 126.3 79 79.7
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 4.2e-27 124.4 82 75.6
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 4.2e-27 124.4 82 75.6
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 7.1e-27 123.6 79 77.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 7.1e-27 123.6 79 78.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 9.3e-27 123.2 87 75.9
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.2e-26 122.9 79 78.5
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.2e-26 122.9 82 74.4
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.6e-26 122.5 79 75.9
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.1e-26 122.1 79 75.9
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.1e-26 122.1 79 74.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.7e-26 121.7 79 75.9
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.5e-26 121.3 79 75.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.5e-26 121.3 79 77.2
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.5e-26 121.3 79 77.2
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 3.5e-26 121.3 79 75.9
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 4.6e-26 120.9 82 73.2
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.0e-26 120.6 79 74.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 6.0e-26 120.6 79 75.9
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 6.0e-26 120.6 79 77.2
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 6.0e-26 120.6 79 77.2
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 7.9e-26 120.2 79 75.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 7.9e-26 120.2 79 75.9
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 7.9e-26 120.2 79 75.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 7.9e-26 120.2 79 75.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 7.9e-26 120.2 79 74.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.0e-25 119.8 79 75.9
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.0e-25 119.8 79 77.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.3e-25 119.4 79 75.9
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.8e-25 119.0 79 74.7
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.8e-25 119.0 79 74.7
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 2.3e-25 118.6 79 73.4
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.3e-25 118.6 79 73.4
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.3e-25 118.6 79 73.4
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.3e-25 118.6 79 73.4
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 2.3e-25 118.6 79 73.4
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.3e-25 118.6 79 73.4
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 3.0e-25 118.2 79 74.7
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.0e-25 118.2 79 73.4
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.0e-25 118.2 79 75.9
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 3.9e-25 117.9 79 74.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.1e-25 117.5 79 73.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 5.1e-25 117.5 79 73.4
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 5.1e-25 117.5 79 73.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.1e-25 117.5 79 73.4
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.1e-25 117.5 79 73.4
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.7e-25 117.1 79 72.2
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 6.7e-25 117.1 79 73.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 8.7e-25 116.7 79 72.2
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 8.7e-25 116.7 79 72.2
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 8.7e-25 116.7 79 72.2
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 8.7e-25 116.7 79 73.4
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 8.7e-25 116.7 79 72.2
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 8.7e-25 116.7 79 72.2
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.1e-24 116.3 79 74.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.1e-24 116.3 79 72.2
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.1e-24 116.3 79 73.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.1e-24 116.3 79 73.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.5e-24 115.9 79 72.2
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.5e-24 115.9 79 73.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.9e-24 115.5 79 74.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 3.3e-24 114.8 79 73.4
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 3.3e-24 114.8 79 70.9
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.3e-24 114.8 79 70.9
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.3e-24 114.8 81 69.1
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.3e-24 114.4 79 73.4
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 5.6e-24 114.0 79 70.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.6e-24 114.0 79 72.2
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.6e-24 114.0 79 72.2
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.6e-24 114.0 79 70.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 7.4e-24 113.6 79 72.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 7.4e-24 113.6 79 70.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 7.4e-24 113.6 79 72.2
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 9.6e-24 113.2 79 69.6
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 9.6e-24 113.2 79 69.6
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 9.6e-24 113.2 79 72.2
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.3e-23 112.8 79 72.2
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.1e-23 112.1 81 67.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.8e-23 111.7 79 69.6
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 4.8e-23 110.9 79 67.1
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 6.2e-23 110.5 79 68.4
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 8.2e-23 110.2 83 68.7
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-22 109.8 83 68.7
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.1e-22 109.8 79 68.4
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.4e-22 109.4 79 68.4
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.4e-22 109.4 79 68.4
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.4e-22 109.4 79 69.6
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.4e-22 109.4 79 68.4
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.8e-22 109.0 79 68.4
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.8e-22 109.0 79 68.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-22 109.0 79 67.1
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.8e-22 109.0 79 68.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.4e-22 108.6 79 67.1
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 4.0e-22 107.8 79 67.1
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 4.0e-22 107.8 79 67.1
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 4.0e-22 107.8 79 67.1
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 4.0e-22 107.8 79 67.1
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 4.0e-22 107.8 79 67.1
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 4.0e-22 107.8 79 67.1
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.3e-22 107.5 83 67.5
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 6.9e-22 107.1 79 69.6
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 6.9e-22 107.1 79 69.6
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 6.9e-22 107.1 79 67.1
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.5e-21 105.9 81 67.9
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 3.4e-21 104.8 77 64.9
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 4.5e-21 104.4 79 62.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 6.5e-20 100.5 79 60.8
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 8.4e-20 100.1 79 68.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.4e-19 99.4 100 55.0
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.5e-19 98.6 79 58.2
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 3.2e-19 98.2 81 56.8
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.7e-16 87.4 57 71.9
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 2.8e-15 85.1 81 51.9
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.6e-13 78.6 79 49.4
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.9e-12 75.1 83 43.4
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.0e-09 66.6 37 81.1
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.4e-09 66.2 37 81.1
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 3.0e-09 65.1 46 69.6
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 8.8e-09 63.5 79 45.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.9e-08 62.4 78 42.3
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 5.7e-08 60.8 47 63.8
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.4e-08 60.5 39 71.8
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 9.7e-08 60.1 44 63.6
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.4e-06 56.2 43 65.1


User provided reference genes

Program Settings