Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 0.0e+00 1134.0 569 100.0
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 9.5e-309 1062.8 569 92.6
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 2.8e-308 1061.2 569 92.6
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 4.7e-308 1060.4 569 92.6
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.4e-307 1058.9 569 92.4
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 3.5e-303 1044.3 569 90.9
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 1.1e-301 1039.3 576 90.8
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 1.4e-296 1022.3 573 90.1
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 5.4e-288 993.8 571 86.5
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 2.3e-286 988.4 560 86.4
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 5.1e-286 987.3 582 84.9
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 3.3e-285 984.6 574 84.3
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 5.6e-285 983.8 578 83.9
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 9.5e-285 983.0 574 84.5
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 6.2e-284 980.3 578 83.0
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 3.1e-283 978.0 571 84.8
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 5.2e-283 977.2 571 84.2
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 2.6e-282 974.9 578 82.7
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 3.4e-282 974.5 572 83.9
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 3.4e-282 974.5 579 83.2
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 4.4e-282 974.2 615 80.2
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 5.8e-282 973.8 550 86.4
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 4.9e-281 970.7 577 83.2
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 1.1e-280 969.5 557 85.5
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 1.4e-280 969.1 547 85.7
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 3.2e-280 968.0 569 84.5
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 1.6e-279 965.7 547 85.6
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 2.7e-279 964.9 547 85.4
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 4.6e-279 964.1 580 82.8
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 6.0e-279 963.8 546 86.1
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 2.3e-278 961.8 546 85.9
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 1.1e-277 959.5 576 82.3
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 1.5e-277 959.1 573 83.9
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 9.6e-277 956.4 575 80.9
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 2.1e-276 955.3 546 85.3
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 1.5e-274 949.1 561 84.3
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 3.4e-274 948.0 570 81.6
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 9.9e-274 946.4 573 80.8
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 9.9e-274 946.4 584 78.9
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 2.4e-272 941.8 583 80.8
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 2.4e-272 941.8 518 89.0
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 2.4e-272 941.8 569 82.1
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 3.2e-272 941.4 508 90.7
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 1.6e-271 939.1 582 78.9
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 1.6e-271 939.1 518 88.0
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 2.1e-271 938.7 548 81.4
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 2.1e-271 938.7 518 89.0
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 3.5e-271 937.9 525 87.8
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 6.0e-271 937.2 525 87.4
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 1.7e-270 935.6 583 78.4
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 2.3e-270 935.3 548 81.2
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 3.9e-270 934.5 569 81.4
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 3.9e-270 934.5 588 76.9
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 6.6e-270 933.7 548 81.4
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 6.6e-270 933.7 583 78.2
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 6.6e-270 933.7 547 82.8
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 1.5e-269 932.6 575 80.3
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 3.3e-269 931.4 518 87.1
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 7.3e-269 930.2 585 77.6
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.6e-268 929.1 588 76.4
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 3.6e-268 927.9 547 82.6
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 4.8e-268 927.5 548 81.2
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 1.1e-267 926.4 582 79.6
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 1.4e-267 926.0 587 76.8
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 2.4e-267 925.2 554 81.8
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 2.4e-267 925.2 548 81.0
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 2.4e-267 925.2 575 79.0
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 4.0e-267 924.5 583 77.2
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 6.9e-267 923.7 548 80.3
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 1.5e-266 922.5 548 82.5
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 4.5e-266 921.0 556 81.1
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 5.8e-266 920.6 653 72.1
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 1.4e-264 916.0 542 81.0
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 1.9e-264 915.6 548 80.1
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 1.9e-264 915.6 548 80.1
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.9e-264 915.6 576 77.8
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 2.7e-263 911.8 542 80.4
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 3.5e-263 911.4 540 82.0
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 7.9e-263 910.2 574 77.5
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 3.0e-262 908.3 574 77.5
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 3.3e-261 904.8 547 79.7
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 3.6e-260 901.4 560 78.6
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 6.2e-260 900.6 584 76.4
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 9.0e-259 896.7 518 83.8
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 1.2e-258 896.3 544 80.0
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 3.4e-258 894.8 565 75.9
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 1.1e-256 889.8 521 82.9
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 3.2e-256 888.3 568 78.7
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 3.9e-254 881.3 521 81.0
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 3.3e-253 878.2 543 77.5
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 3.4e-250 868.2 559 75.5
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.4e-250 868.2 521 84.1
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 4.5e-250 867.8 575 74.8
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 4.9e-249 864.4 548 76.8
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 4.5e-242 841.3 569 74.9
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 2.9e-241 838.6 548 73.5
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 8.5e-241 837.0 486 85.2
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 7.2e-240 833.9 500 83.2
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 2.3e-238 828.9 469 85.5
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 2.5e-237 825.5 468 85.7
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 5.7e-237 824.3 468 83.1
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 1.6e-236 822.8 550 72.4
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 2.6e-234 815.5 439 90.7
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 2.6e-229 798.9 443 88.9
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 2.8e-228 795.4 547 69.8
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 9.4e-224 780.4 466 80.7
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 4.7e-223 778.1 540 72.2
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 2.4e-203 712.6 542 64.4
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 4.0e-198 695.3 561 61.3
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 3.8e-193 678.7 464 73.1
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 8.9e-182 641.0 552 62.7
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 2.4e-171 606.3 552 55.8
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 1.2e-170 604.0 527 57.9
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 3.2e-155 552.7 461 59.0
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 1.4e-147 527.3 503 53.7
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 5.1e-145 518.8 332 78.0
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 9.3e-131 471.5 285 81.8
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 7.7e-85 318.9 254 60.2
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 5.4e-78 296.2 158 88.0
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 4.1e-54 216.9 504 29.8
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 6.2e-42 176.4 208 48.6
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 2.8e-34 151.0 90 82.2
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.1e-30 139.0 443 25.3
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 3.4e-24 117.5 123 52.8
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 5.5e-22 110.2 66 77.3
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 9.6e-19 99.4 81 60.5
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 8.2e-10 69.7 377 24.7
QL11p035429 Quercus lobata HOM05D006107 ORTHO05D007455 5.9e-08 63.5 67 56.7
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 7.7e-08 63.2 30 93.3
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 1.4e-06 58.9 303 25.1
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 9.4e-06 56.2 497 20.9


User provided reference genes

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