Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0257491 Rosa chinensis HOM05D025254 ORTHO05D003195 1.3e-171 606.3 304 100.0
FAN27G2730 Fragaria x ananassa HOM05D025254 ORTHO05D003195 2.8e-102 375.9 304 69.1
FAN15G2062 Fragaria x ananassa HOM05D025254 ORTHO05D003195 1.8e-101 373.2 304 68.4
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 2.9e-99 365.9 304 68.1
FAN20G1193 Fragaria x ananassa HOM05D025254 ORTHO05D003195 2.9e-99 365.9 304 67.8
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 8.7e-43 178.3 295 40.7
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 1.1e-29 134.8 326 33.7
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 8.8e-27 125.2 328 32.9
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-26 124.8 311 36.0
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 6.9e-24 115.5 316 32.0
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 1.3e-22 111.3 179 42.5
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 5.0e-22 109.4 321 34.6
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 5.0e-22 109.4 311 34.4
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 7.9e-20 102.1 317 33.1
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 4.8e-17 92.8 279 29.0
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 1.4e-16 91.3 327 28.1
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.4e-16 90.5 309 29.4
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.1e-16 90.1 299 29.1
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 4.1e-16 89.7 309 31.4
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 5.3e-16 89.4 278 33.5
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-15 88.2 307 30.3
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 1.6e-15 87.8 302 31.8
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.0e-15 87.4 307 30.9
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 2.0e-15 87.4 327 27.5
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.5e-15 86.7 307 30.3
Lalb_Chr09g0328351 Lupinus albus HOM05D003792 ORTHO05D003195 1.0e-14 85.1 286 33.2
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.5e-13 81.3 322 29.5
Potri.004G140701 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.9e-13 80.9 270 31.9
Gohir.A01G007200 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.4e-13 78.6 283 29.0
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 9.4e-13 78.6 260 29.6
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 1.6e-12 77.8 322 29.8
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 3.6e-12 76.6 314 29.3
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 6.1e-12 75.9 225 31.1
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 8.0e-12 75.5 296 30.7
arahy.Tifrunner.gnm1.ann1.SW5XY7 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.0e-11 73.6 323 30.0
Gorai.002G008300 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.0e-11 73.6 283 28.6
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.1e-10 71.6 231 30.3
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 1.1e-10 71.6 317 28.4
arahy.Tifrunner.gnm1.ann1.I5Q2RG Arachis hypogaea HOM05D003792 ORTHO05D003195 3.3e-10 70.1 319 29.2
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 4.4e-10 69.7 322 28.6
Duzib052G0481 Durio zibethinus HOM05D003792 ORTHO05D003195 5.7e-10 69.3 103 43.7
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 7.5e-10 68.9 324 27.5
Gohir.D01G007300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.7e-09 67.8 261 28.7
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.7e-09 67.8 298 27.5
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.2e-09 67.4 298 28.5
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.8e-09 66.2 301 28.6
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 1.1e-08 65.1 230 30.4
Sed0006191 Sechium edule HOM05D003792 ORTHO05D003195 1.1e-08 65.1 231 27.7
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 1.4e-08 64.7 165 35.2
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 2.4e-08 63.9 276 29.7
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 3.1e-08 63.5 258 27.1
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 4.1e-08 63.2 216 29.2
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 7.0e-08 62.4 235 31.1
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 1.6e-07 61.2 266 28.6
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 4.5e-07 59.7 291 28.2
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 5.9e-07 59.3 282 25.2
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 7.7e-07 58.9 288 26.4
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.7e-07 58.9 220 29.5
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.3e-06 58.2 271 27.3
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 2.2e-06 57.4 59 47.5
SalBow6G6536 Salvia bowleyana HOM05D011234 ORTHO05D003195 2.9e-06 57.0 255 28.2
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 3.8e-06 56.6 218 29.8
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 5.0e-06 56.2 278 28.4
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 6.5e-06 55.8 280 26.1
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 8.5e-06 55.5 220 29.1
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 8.5e-06 55.5 271 28.0


User provided reference genes

Program Settings