Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 8.2e-103 377.1 195 100.0
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 1.1e-91 340.1 195 91.8
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 6.3e-79 297.7 163 90.2
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.4e-78 296.6 163 90.2
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.6e-77 293.1 163 89.0
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 6.6e-68 261.2 200 72.0
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 7.3e-67 257.7 195 71.8
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 3.3e-59 232.3 196 61.2
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 6.8e-57 224.6 208 58.2
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 1.3e-55 220.3 216 56.9
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.7e-55 219.9 209 56.5
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 3.7e-55 218.8 206 63.1
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 3.2e-54 215.7 229 54.1
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 5.4e-54 214.9 200 64.0
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 5.4e-54 214.9 203 58.1
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 2.0e-53 213.0 192 63.0
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.0e-53 213.0 189 61.4
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 2.7e-53 212.6 201 55.7
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 4.6e-53 211.8 211 57.3
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 1.0e-52 210.7 198 59.1
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 3.0e-52 209.1 189 59.8
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.1e-51 207.2 212 57.5
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 2.5e-51 206.1 204 58.3
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 9.5e-51 204.1 198 59.1
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 3.6e-50 202.2 216 58.3
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 3.6e-50 202.2 214 55.1
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 3.6e-50 202.2 210 52.4
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 6.2e-50 201.4 204 53.9
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.8e-49 199.9 213 55.9
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 2.3e-49 199.5 194 55.7
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 3.1e-49 199.1 200 55.5
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 5.2e-49 198.4 213 57.7
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.8e-49 198.0 206 53.4
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 6.8e-49 198.0 206 53.4
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 8.9e-49 197.6 157 68.2
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 8.9e-49 197.6 206 54.4
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 2.0e-48 196.4 205 51.7
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.6e-48 196.1 206 52.9
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 2.6e-48 196.1 197 60.4
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 4.4e-48 195.3 205 56.6
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 4.4e-48 195.3 212 53.3
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.3e-47 193.7 196 58.2
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 8.3e-47 191.0 199 58.3
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 1.1e-46 190.7 211 52.6
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 1.4e-46 190.3 191 51.8
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 3.2e-46 189.1 206 51.9
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 3.2e-46 189.1 197 57.9
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 3.2e-46 189.1 195 53.8
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 5.4e-46 188.3 197 57.9
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 7.1e-46 188.0 200 55.5
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 2.7e-45 186.0 205 55.6
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 2.7e-45 186.0 175 59.4
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.0e-44 184.1 210 52.4
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.3e-44 183.7 195 53.3
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 3.0e-44 182.6 195 55.4
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 3.9e-44 182.2 185 54.1
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 3.9e-44 182.2 119 70.6
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 3.9e-44 182.2 119 70.6
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 5.1e-44 181.8 192 53.6
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 8.6e-44 181.0 205 51.2
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 1.9e-43 179.9 187 58.3
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.9e-43 179.9 208 50.0
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 2.5e-43 179.5 185 54.1
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 2.5e-43 179.5 180 56.7
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 3.3e-43 179.1 214 50.0
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 3.3e-43 179.1 213 52.1
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 4.3e-43 178.7 185 53.5
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 5.6e-43 178.3 115 70.4
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 5.6e-43 178.3 189 55.0
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.4e-41 173.7 184 53.8
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.8e-41 173.3 188 52.1
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 4.0e-41 172.2 185 52.4
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 5.2e-41 171.8 213 50.7
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 5.2e-41 171.8 204 49.0
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 3.4e-40 169.1 178 56.7
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 9.9e-40 167.5 187 53.5
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 1.7e-39 166.8 186 52.7
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 2.2e-39 166.4 192 50.5
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 2.9e-39 166.0 187 52.9
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 3.8e-39 165.6 187 52.9
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 4.9e-39 165.2 151 62.3
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 3.2e-38 162.5 193 53.4
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 2.1e-37 159.8 178 55.1
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 6.0e-37 158.3 145 57.2
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.3e-36 156.4 87 75.9
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 5.1e-36 155.2 113 65.5
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 5.1e-36 155.2 150 53.3
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.1e-35 154.1 96 71.9
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 3.3e-35 152.5 160 53.8
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 5.6e-35 151.8 153 50.3
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 1.6e-34 150.2 169 50.3
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 3.1e-33 146.0 112 66.1
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 2.6e-32 142.9 100 62.0
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 1.1e-30 137.5 107 67.3
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.1e-30 134.8 150 51.3
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 2.1e-29 133.3 132 58.3
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 2.7e-29 132.9 202 38.6
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 3.5e-29 132.5 207 44.9
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.3e-28 129.8 118 55.1
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 1.8e-25 120.2 79 63.3
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 4.0e-25 119.0 77 70.1
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 9.3e-22 107.8 135 53.3
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 3.0e-20 102.8 111 48.6
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 6.7e-20 101.7 91 52.7
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.1e-19 100.9 120 45.8
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 1.5e-19 100.5 72 79.2
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 5.6e-19 98.6 120 38.3
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 9.6e-19 97.8 80 55.0
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 8.1e-18 94.7 129 42.6
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.9e-15 86.3 74 62.2
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 6.4e-15 85.1 125 41.6
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 1.1e-14 84.3 124 44.4
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.1e-14 84.3 60 65.0
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 4.2e-14 82.4 178 35.4


User provided reference genes

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