Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 3942.5 1981 100.0
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 3503.4 2014 88.8
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 3501.8 2007 89.0
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 3423.6 2005 88.0
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 3031.5 1988 78.3
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 3005.3 1706 89.4
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2973.3 1708 88.8
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2898.2 1964 76.6
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2895.1 1987 75.7
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2431.0 2038 63.8
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2370.1 2006 63.2
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2330.4 2008 62.3
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2325.1 2003 62.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2290.4 1987 61.2
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2290.0 2003 61.2
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2289.2 2019 60.9
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2275.4 2008 61.4
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2262.3 1997 60.6
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2260.3 2014 60.6
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2257.3 1999 60.7
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2246.5 2042 60.3
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2224.5 2005 60.1
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2218.7 2009 60.0
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2211.8 1998 60.1
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2180.6 2037 59.3
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2168.3 2001 58.9
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2161.7 2018 58.4
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2161.0 2002 58.2
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2158.6 1999 57.8
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2147.9 2035 58.7
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2128.6 2021 57.7
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 2074.7 2006 57.0
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2059.6 2030 55.7
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2055.8 2014 57.3
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2052.7 2009 55.4
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 2040.0 2009 55.3
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2039.6 2032 55.7
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 2038.5 2004 55.6
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 2010.3 2011 55.1
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 2000.3 2014 54.6
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1981.8 2007 55.0
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1981.1 2014 54.6
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1961.8 2000 54.2
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1955.3 2014 54.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1942.5 1997 53.7
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1933.3 2014 53.6
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1927.9 2049 52.8
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1919.4 1999 53.4
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1913.3 2030 53.8
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1887.1 2002 52.7
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1878.6 2013 52.1
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1875.5 2012 52.0
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1797.3 1937 52.3
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1787.3 1995 50.5
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1785.4 2008 51.5
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1778.1 2002 49.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1771.5 2016 49.7
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1761.1 2015 51.0
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1754.6 2029 49.4
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1751.5 2019 49.4
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1749.2 1971 51.2
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1745.7 2023 49.1
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1734.2 2046 49.5
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1731.5 2068 49.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1722.6 2042 48.3
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1707.2 1995 49.6
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1706.4 1999 49.8
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1701.8 1998 49.6
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1699.9 1997 49.3
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1689.1 1934 49.8
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1674.4 2006 47.1
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1671.4 1994 48.7
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1669.8 1994 48.9
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1669.1 1998 49.3
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1649.8 1928 48.4
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1647.9 2000 48.2
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1647.5 1998 48.5
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1647.1 1991 48.6
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1633.6 1999 48.0
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1633.2 2000 48.0
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1630.9 1999 47.8
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1628.6 2022 46.9
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1626.7 2014 47.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1623.6 2135 44.9
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1610.5 1942 48.1
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1600.5 1790 50.7
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1586.2 1466 59.3
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1583.5 1466 59.2
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1567.0 1990 45.7
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1553.1 1954 46.5
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1545.0 2002 46.5
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1429.1 2011 43.7
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1345.1 2078 40.8
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1345.1 1742 45.2
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1307.7 1202 58.1
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1109.0 2027 35.7
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1102.8 1704 42.0
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1078.9 2130 34.9
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.7e-286 989.9 1675 38.0
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 2.2e-251 874.0 1504 36.8
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 1.9e-239 834.3 2185 31.3
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 2.1e-217 761.1 676 63.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.5e-215 754.2 2111 30.8
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 9.5e-215 752.3 1985 31.6
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 3.4e-164 584.3 1207 34.4
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 4.6e-161 573.9 1712 29.0
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 2.3e-160 571.6 1889 27.4
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.5e-154 551.6 511 59.1
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.0e-144 519.6 277 95.3
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.3e-142 512.7 402 63.2
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 6.3e-134 483.8 1139 33.1
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 6.3e-134 483.8 337 71.2
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 9.8e-127 459.9 440 55.5
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.5e-119 436.0 360 63.9
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 4.4e-119 434.5 390 55.6
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 3.5e-108 398.3 276 72.1
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.8e-81 308.9 198 76.8
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 6.9e-80 304.3 514 39.5
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 8.1e-73 280.8 373 44.5
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.4e-69 270.0 264 54.9
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 2.3e-59 236.1 201 60.2
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 8.2e-57 227.6 220 57.3
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 5.0e-54 218.4 180 62.2
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 2.7e-44 186.0 538 29.9
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.1e-44 184.9 323 38.7
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-38 167.2 1294 21.8
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 2.7e-36 159.5 178 56.2
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 4.5e-31 142.1 83 75.9
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.5e-29 136.3 268 34.3
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 9.4e-29 134.4 369 25.7
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 5.2e-27 128.6 226 34.5
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 4.1e-24 119.0 65 84.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-23 117.5 65 83.1
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 7.7e-23 114.8 64 84.4
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 5.5e-21 108.6 69 75.4
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 9.4e-21 107.8 103 53.4
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.8e-19 103.6 68 85.3
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 8.8e-19 101.3 65 70.8
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-19 101.3 118 44.1
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.0e-18 100.1 105 52.4
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 3.2e-13 82.8 53 77.4
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 3.2e-13 82.8 128 39.1
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 3.0e-11 76.3 55 65.5
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 7.0e-08 65.1 46 67.4
Eucgr.I01407 Eucalyptus grandis HOM05D005412 ORTHO05D006096 4.5e-07 62.4 106 34.9


User provided reference genes

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