Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0256871 Rosa chinensis HOM05D009166 ORTHO05D000001 1.1e-47 193.0 94 100.0
RcHm_v2.0_Chr5g0077241 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-40 169.1 90 90.0
RcHm_v2.0_Chr2g0141981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-36 156.4 89 83.1
RcHm_v2.0_Chr1g0337711 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-31 139.4 90 73.3
RcHm_v2.0_Chr1g0344491 Rosa chinensis HOM05D000002 ORTHO05D000001 3.4e-30 134.8 77 79.2
RcHm_v2.0_Chr1g0384421 Rosa chinensis HOM05D009166 ORTHO05D000001 3.4e-30 134.8 90 71.1
RcHm_v2.0_Chr1g0339131 Rosa chinensis HOM05D000002 ORTHO05D000001 9.3e-28 126.7 77 75.3
RcHm_v2.0_Chr1g0349331 Rosa chinensis HOM05D000002 ORTHO05D000001 4.3e-25 117.9 77 68.8
RcHm_v2.0_Chr3g0482021 Rosa chinensis HOM05D000002 ORTHO05D000001 1.1e-23 113.2 89 58.4
RcHm_v2.0_Chr1g0347771 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-22 108.6 88 53.4
RcHm_v2.0_Chr7g0178931 Rosa chinensis HOM05D000002 ORTHO05D000001 6.0e-19 97.4 90 48.9
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 2.3e-18 95.5 74 55.4
FvH4_5g38691 Fragaria vesca HOM05D000002 ORTHO05D000001 3.7e-16 88.2 57 63.2
RcHm_v2.0_Chr2g0174291 Rosa chinensis HOM05D000002 ORTHO05D000001 2.2e-13 79.0 86 39.5
RcHm_v2.0_Chr1g0366871 Rosa chinensis HOM05D000062 ORTHO05D000043 2.9e-13 78.6 88 38.6
RcHm_v2.0_Chr2g0156571 Rosa chinensis HOM05D000002 ORTHO05D000001 6.5e-13 77.4 86 38.4
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 1.9e-12 75.9 96 41.7
RcHm_v2.0_Chr1g0355351 Rosa chinensis HOM05D000287 ORTHO05D000001 9.4e-12 73.6 66 47.0
RcHm_v2.0_Chr5g0004361 Rosa chinensis HOM05D000002 ORTHO05D000001 9.4e-12 73.6 86 37.2
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-11 72.8 81 39.5
RcHm_v2.0_Chr6g0299971 Rosa chinensis HOM05D000002 ORTHO05D000001 3.6e-11 71.6 57 49.1
RcHm_v2.0_Chr5g0025271 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-10 69.3 82 39.0
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 2.3e-10 68.9 79 36.7
MD11G1242500 Malus domestica HOM05D000002 ORTHO05D000001 3.0e-10 68.6 97 40.2
RcHm_v2.0_Chr3g0448481 Rosa chinensis HOM05D009166 ORTHO05D000001 3.9e-10 68.2 88 36.4
RcHm_v2.0_Chr7g0203981 Rosa chinensis HOM05D000002 ORTHO05D000001 6.7e-10 67.4 79 36.7
TAR218G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.1e-09 66.6 86 32.6
RcHm_v2.0_Chr5g0012631 Rosa chinensis HOM05D013433 ORTHO05D000001 1.5e-09 66.2 80 32.5
Sabra05G0021700 Salix brachista HOM05D000002 ORTHO05D000001 1.5e-09 66.2 78 39.7
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 2.0e-09 65.9 79 34.2
FvH4_3g17262 Fragaria vesca HOM05D000002 ORTHO05D000001 2.0e-09 65.9 76 36.8
Hma1.2p1_2812F.1_g328890 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.3e-09 65.1 86 30.2
RcHm_v2.0_Chr2g0112811 Rosa chinensis HOM05D000002 ORTHO05D000001 3.3e-09 65.1 59 45.8
RcHm_v2.0_Chr2g0136201 Rosa chinensis HOM05D000002 ORTHO05D000001 4.3e-09 64.7 88 30.7
CSS0020274 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.7e-09 63.5 84 40.5
RcHm_v2.0_Chr2g0117291 Rosa chinensis HOM05D010729 ORTHO05D000001 9.7e-09 63.5 74 36.5
RcHm_v2.0_Chr5g0058511 Rosa chinensis HOM05D009166 ORTHO05D000001 1.3e-08 63.2 72 36.1
Sabra16G0104200 Salix brachista HOM05D000002 ORTHO05D000001 1.3e-08 63.2 78 39.7
Sabra17G0101800 Salix brachista HOM05D000002 ORTHO05D000001 1.3e-08 63.2 78 39.7
RcHm_v2.0_Chr3g0448951 Rosa chinensis HOM05D016059 ORTHO05D025540 2.2e-08 62.4 74 36.5
RcHm_v2.0_Chr7g0234441 Rosa chinensis HOM05D013433 ORTHO05D000001 2.2e-08 62.4 76 36.8
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 6.3e-08 60.8 81 33.3
RcHm_v2.0_Chr4g0431731 Rosa chinensis HOM05D009166 ORTHO05D000001 6.3e-08 60.8 72 36.1
CSS0011950 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.2e-08 60.5 75 38.7
FvH4_1g15351 Fragaria vesca HOM05D000002 ORTHO05D000001 8.2e-08 60.5 74 36.5
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 8.2e-08 60.5 79 31.6
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-07 59.7 83 30.1
Oeu032551.1 Olea europaea HOM05D000002 ORTHO05D000001 1.4e-07 59.7 82 35.4
RcHm_v2.0_Chr4g0436951 Rosa chinensis HOM05D000002 ORTHO05D000001 1.4e-07 59.7 80 30.0
RcHm_v2.0_Chr2g0159441 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-07 59.3 80 30.0
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.4e-07 58.9 80 32.5
COL.COLO4_20536 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.4e-07 58.9 94 30.9
RcHm_v2.0_Chr6g0266721 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-07 58.9 72 31.9
Sabra10G0062000 Salix brachista HOM05D000002 ORTHO05D000001 2.4e-07 58.9 77 37.7
FvH4_4g24051 Fragaria vesca HOM05D000002 ORTHO05D000001 3.1e-07 58.5 79 32.9
Hma1.2p1_1458F.1_g284730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.1e-07 58.5 84 26.2
Nn1g01357 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.1e-07 58.2 87 32.2
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.1e-07 58.2 84 28.6
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 4.1e-07 58.2 84 33.3
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.3e-07 57.8 74 39.2
Sabra13G0070400 Salix brachista HOM05D000002 ORTHO05D000001 6.9e-07 57.4 87 34.5
Nn7g37430 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.1e-07 57.0 94 30.9
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.2e-06 56.6 87 33.3
FvH4_2g06411 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-06 56.6 88 31.8
Oeu019477.1 Olea europaea HOM05D000002 ORTHO05D000001 1.2e-06 56.6 82 36.6
Hma1.2p1_0200F.1_g086090 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-06 56.2 77 40.3
Oeu003487.1 Olea europaea HOM05D000002 ORTHO05D000001 1.5e-06 56.2 77 39.0
Oeu018031.1 Olea europaea HOM05D000002 ORTHO05D000001 1.5e-06 56.2 82 36.6
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-06 56.2 87 31.0
Oeu012960.1 Olea europaea HOM05D000002 ORTHO05D000001 2.0e-06 55.8 79 36.7
Oeu059914.1 Olea europaea HOM05D000002 ORTHO05D000001 2.0e-06 55.8 82 35.4
Oeu062632.1 Olea europaea HOM05D000002 ORTHO05D000001 2.0e-06 55.8 86 34.9
RcHm_v2.0_Chr5g0017791 Rosa chinensis HOM05D016059 ORTHO05D000001 2.0e-06 55.8 74 31.1
MD16G1163700 Malus domestica HOM05D009166 ORTHO05D000001 2.6e-06 55.5 82 39.0
RcHm_v2.0_Chr7g0206441 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-06 55.5 84 27.4
FvH4_1g26621 Fragaria vesca HOM05D013433 ORTHO05D000001 3.4e-06 55.1 74 31.1
Hma1.2p1_0602F.1_g187610 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.4e-06 55.1 88 38.6
Rhsim05G0076500 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.4e-06 55.1 83 32.5
Sabra15G0028100 Salix brachista HOM05D000002 ORTHO05D000001 3.4e-06 55.1 74 28.4
Ciclev10030281m.g Citrus clementina HOM05D000132 ORTHO05D000058 4.5e-06 54.7 72 33.3
Hma1.2p1_0445F.1_g154480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.5e-06 54.7 81 24.7
Oeu005617.1 Olea europaea HOM05D000002 ORTHO05D000001 4.5e-06 54.7 82 36.6
Oeu037102.1 Olea europaea HOM05D000002 ORTHO05D000001 4.5e-06 54.7 77 37.7
C09p34990 Brassica napus HOM05D000002 ORTHO05D000001 5.9e-06 54.3 82 30.5
FvH4_6g11492 Fragaria vesca HOM05D000002 ORTHO05D000001 5.9e-06 54.3 93 36.6
HanXRQChr01g0008001 Helianthus annuus HOM05D000002 ORTHO05D000001 5.9e-06 54.3 83 34.9
QL04p020492 Quercus lobata HOM05D013570 ORTHO05D000001 5.9e-06 54.3 84 28.6
Migut.F01590 Erythranthe guttata HOM05D000002 ORTHO05D000001 7.7e-06 53.9 79 34.2
Migut.H01198 Erythranthe guttata HOM05D000002 ORTHO05D000001 7.7e-06 53.9 79 34.2
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 7.7e-06 53.9 92 32.6
Oeu057479.1 Olea europaea HOM05D000002 ORTHO05D000001 7.7e-06 53.9 77 37.7
PSO423G0202 Papaver somniferum HOM05D000973 ORTHO05D000001 7.7e-06 53.9 79 36.7
Sabra11G0010600 Salix brachista HOM05D000002 ORTHO05D000001 7.7e-06 53.9 87 31.0


User provided reference genes

Program Settings