Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 0.0e+00 1169.5 588 100.0
Sed0007601 Sechium edule HOM05D004909 ORTHO05D009316 2.9e-111 406.8 391 55.0
SEGI_22240 Sequoiadendron giganteum HOM05D004909 ORTHO05D009316 6.8e-92 342.4 399 48.4
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 8.8e-92 342.0 175 100.0
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 2.2e-87 327.4 174 96.0
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 8.5e-87 325.5 175 95.4
Actinidia34900 Actinidia chinensis HOM05D004909 ORTHO05D009316 2.7e-85 320.5 410 44.6
Sc13g0007740 Simmondsia chinensis HOM05D004909 ORTHO05D009316 2.3e-84 317.4 410 43.4
TWI14G0838 Tripterygium wilfordii HOM05D004909 ORTHO05D009316 2.6e-83 313.9 395 44.6
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 4.4e-83 313.2 170 94.1
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 7.5e-83 312.4 170 94.7
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 7.5e-83 312.4 170 94.7
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 2.8e-82 310.5 172 93.0
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 1.1e-81 308.5 161 96.9
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 1.1e-81 308.5 165 95.2
Oeu050988.1 Olea europaea HOM05D004909 ORTHO05D009625 2.0e-80 304.3 343 49.9
Oeu050987.1 Olea europaea HOM05D004909 ORTHO05D009625 1.0e-79 302.0 349 47.6
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 5.2e-76 289.7 176 86.4
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 2.6e-75 287.3 176 85.2
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 4.9e-74 283.1 155 93.5
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 4.1e-73 280.0 176 82.4
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 3.9e-71 273.5 169 86.4
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 1.1e-70 271.9 169 85.8
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 3.3e-70 270.4 169 85.2
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 5.6e-70 269.6 161 87.6
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.5e-67 261.5 169 82.2
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.5e-67 261.5 169 82.2
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.5e-67 261.5 169 82.2
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.5e-67 261.5 169 82.2
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.5e-67 261.5 169 82.2
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 4.4e-67 260.0 169 81.7
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 4.4e-67 260.0 169 81.7
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 4.4e-67 260.0 169 81.7
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 4.4e-67 260.0 169 81.7
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 4.4e-67 260.0 169 81.7
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 2.9e-66 257.3 165 83.0
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 2.9e-66 257.3 160 85.0
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.9e-66 257.3 140 94.3
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 1.9e-65 254.6 170 80.6
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 6.0e-64 249.6 177 74.6
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 7.8e-64 249.2 177 74.0
AUR62042355 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.7e-63 248.1 295 42.7
AUR62043789 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.7e-63 248.1 295 42.7
AUR62043900 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.7e-63 248.1 295 42.7
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 2.3e-63 247.7 177 73.4
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 3.0e-63 247.3 169 77.5
Glyma.15G187700 Glycine max HOM05D004909 ORTHO05D009316 1.2e-61 241.9 389 37.3
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.8e-61 240.7 152 86.2
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 1.1e-60 238.8 338 39.9
EL10Ac7g16726 Beta vulgaris HOM05D004909 ORTHO05D009316 5.2e-60 236.5 393 36.1
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 3.4e-59 233.8 176 72.7
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 3.4e-59 233.8 176 72.7
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-58 231.5 176 72.2
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 6.0e-56 223.0 159 76.7
THA.LOC109116692 Tarenaya hassleriana HOM05D004909 ORTHO05D009316 1.0e-55 222.2 215 48.8
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 1.1e-54 218.8 169 71.6
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 5.8e-51 206.5 175 67.4
Aqoxy2G02244 Aquilegia oxysepala HOM05D004909 ORTHO05D009316 9.9e-51 205.7 396 34.1
Aqoxy3G01127 Aquilegia oxysepala HOM05D004909 ORTHO05D009316 9.9e-51 205.7 396 34.1
AUR62026823 Chenopodium quinoa HOM05D004909 ORTHO05D009316 3.7e-50 203.8 216 44.4
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 3.7e-50 203.8 131 85.5
EL10Ac1g02201 Beta vulgaris HOM05D004909 ORTHO05D009316 3.2e-49 200.7 398 34.9
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 3.2e-49 200.7 169 68.0
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 1.6e-48 198.4 141 76.6
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 2.7e-48 197.6 139 77.7
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 6.0e-48 196.4 107 92.5
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 1.0e-47 195.7 141 75.9
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 2.3e-47 194.5 169 65.7
DCAR_032462 Daucus carota HOM05D004909 ORTHO05D009316 1.2e-45 188.7 462 31.4
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 8.9e-44 182.6 141 73.8
AUR62042351 Chenopodium quinoa HOM05D004909 ORTHO05D009316 2.0e-43 181.4 415 31.1
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 1.7e-42 178.3 112 83.9
Potri.014G168000 Populus trichocarpa HOM05D006604 ORTHO05D007974 2.4e-41 174.5 104 85.6
Lalb_Chr00c21g0405621 Lupinus albus HOM05D004909 ORTHO05D009316 2.1e-40 171.4 156 50.0
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 2.3e-39 167.9 154 66.9
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.5e-38 165.2 144 63.2
SHI53009 Sapria himalayana HOM05D006604 ORTHO05D007974 5.6e-38 163.3 128 73.4
SHI35584 Sapria himalayana HOM05D004909 ORTHO05D009316 1.3e-37 162.2 173 47.4
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 2.1e-37 161.4 85 95.3
Nitab4.5_0010033g0040 Nicotiana tabacum HOM05D004909 ORTHO05D009316 2.0e-35 154.8 247 39.3
SMO053G0007 Selaginella moellendorffii HOM05D006604 ORTHO05D007974 1.3e-34 152.1 151 58.9
Peaxi162Scf00651g00626 Petunia axillaris HOM05D004909 ORTHO05D009316 2.2e-34 151.4 344 32.6
ClCG06G009210 Citrullus lanatus HOM05D006604 ORTHO05D007974 5.4e-33 146.7 154 57.8
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 6.6e-31 139.8 78 88.5
Nitab4.5_0001526g0140 Nicotiana tabacum HOM05D004909 ORTHO05D009316 5.6e-30 136.7 201 38.8
HPP92_026900 Vanilla planifolia HOM05D004909 ORTHO05D009316 5.6e-30 136.7 128 49.2
Nitab4.5_0000081g0150 Nicotiana tabacum HOM05D004909 ORTHO05D009625 9.6e-30 136.0 261 36.0
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 2.8e-29 134.4 120 64.2
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 2.8e-29 134.4 120 64.2
CARHR288250 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.1e-28 132.5 91 78.0
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 1.1e-28 132.5 72 91.7
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 3.1e-28 131.0 73 87.7
Sed0025836 Sechium edule HOM05D004909 ORTHO05D009316 3.8e-26 124.0 120 52.5
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 6.4e-26 123.2 67 92.5
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 8.4e-26 122.9 164 51.2
Lj2A1227T106 Lonicera japonica HOM05D004909 ORTHO05D009316 1.4e-25 122.1 107 57.0
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 3.2e-25 120.9 70 87.1
EL10Ac1g01432 Beta vulgaris HOM05D004909 ORTHO05D009316 6.0e-24 116.7 162 40.1
MD15G1429600 Malus domestica HOM05D006604 ORTHO05D007974 1.0e-23 115.9 70 85.7
vmacro17405 Vaccinium macrocarpon HOM05D004909 ORTHO05D009316 1.8e-23 115.2 105 49.5
ATR0392G001 Amborella trichopoda HOM05D006604 ORTHO05D007974 5.1e-23 113.6 100 62.0
Sopen05g027060 Solanum pennellii HOM05D000213 ORTHO05D011567 4.3e-22 110.5 187 37.4
GSVIVG01035307001 Vitis vinifera HOM05D000029 ORTHO05D001072 5.6e-22 110.2 78 73.1
CAN.G505.9 Capsicum annuum HOM05D004909 ORTHO05D009316 7.4e-22 109.8 134 45.5
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.1e-20 105.9 62 85.5
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.1e-20 105.9 57 93.0
SHI01304 Sapria himalayana HOM05D006604 ORTHO05D007974 6.9e-20 103.2 87 66.7
Sc02g0004080 Simmondsia chinensis HOM05D004909 ORTHO05D009316 2.0e-19 101.7 136 47.8
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.6e-19 101.3 66 81.8
AUR62043914 Chenopodium quinoa HOM05D000533 ORTHO05D001069 3.4e-19 100.9 226 32.7
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 3.4e-19 100.9 61 85.2
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 1.3e-18 99.0 51 96.1
Nitab4.5_0004300g0260 Nicotiana tabacum HOM05D004909 ORTHO05D009316 2.9e-18 97.8 94 51.1
Sed0005050 Sechium edule HOM05D004909 ORTHO05D009316 2.9e-18 97.8 135 40.0
Solyc05g045890.1 Solanum lycopersicum HOM05D004909 ORTHO05D009625 3.2e-17 94.4 234 33.3
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 1.2e-16 92.4 47 97.9
Lalb_Chr00c21g0405631 Lupinus albus HOM05D004909 ORTHO05D009316 6.0e-16 90.1 195 32.3
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 6.0e-16 90.1 53 83.0
arahy.Tifrunner.gnm1.ann1.HS2KB4 Arachis hypogaea HOM05D004909 ORTHO05D009316 7.9e-16 89.7 102 46.1
Potri.007G061821 Populus trichocarpa HOM05D004909 ORTHO05D009316 7.9e-16 89.7 201 33.3
Lalb_Chr11g0070061 Lupinus albus HOM05D004909 ORTHO05D009316 2.3e-15 88.2 79 48.1
Peaxi162Scf00456g00034 Petunia axillaris HOM05D004909 ORTHO05D009316 6.7e-15 86.7 72 50.0
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 8.7e-15 86.3 144 34.0
Hma1.2p1_0003F.1_g003590 Hydrangea macrophylla HOM05D004909 ORTHO05D009316 5.7e-14 83.6 133 42.1
SHI44820 Sapria himalayana HOM05D004909 ORTHO05D009316 6.3e-13 80.1 62 59.7
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 3.1e-12 77.8 45 88.9
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 5.3e-12 77.0 58 74.1
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 6.9e-12 76.6 63 71.4
EL10Ac7g16568 Beta vulgaris HOM05D004909 ORTHO05D009316 6.9e-12 76.6 78 50.0
EL10As18g24157 Beta vulgaris HOM05D004909 ORTHO05D009316 6.9e-12 76.6 77 50.6
AUR62042356 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.5e-11 75.5 238 29.0
CAN.G1858.5 Capsicum annuum HOM05D004909 ORTHO05D009316 2.6e-11 74.7 270 24.8
Cre01.g018800 Chlamydomonas reinhardtii HOM05D006604 ORTHO05D007974 3.4e-11 74.3 175 32.6
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 4.5e-11 73.9 107 45.8
AUR62037530 Chenopodium quinoa HOM05D004909 ORTHO05D009316 7.6e-11 73.2 67 52.2
Nitab4.5_0003083g0030 Nicotiana tabacum HOM05D004909 ORTHO05D009316 7.6e-11 73.2 101 44.6
Nitab4.5_0000580g0140 Nicotiana tabacum HOM05D004909 ORTHO05D009316 1.0e-10 72.8 108 40.7
Nitab4.5_0002418g0090 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.3e-10 72.4 44 81.8
Mapoly1449s0001 Marchantia polymorpha HOM05D006604 ORTHO05D007974 1.7e-10 72.0 110 35.5
CsaV3_UNG209050 Cucumis sativus L. HOM05D004909 ORTHO05D009316 2.2e-10 71.6 58 50.0
arahy.Tifrunner.gnm1.ann1.0IJH8U Arachis hypogaea HOM05D012997 ORTHO05D014434 3.8e-10 70.9 108 35.2
Nitab4.5_0002276g0060 Nicotiana tabacum HOM05D004909 ORTHO05D009316 6.5e-10 70.1 46 73.9
CAN.G505.15 Capsicum annuum HOM05D004909 ORTHO05D009316 1.4e-09 68.9 100 40.0
AUR62043791 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.4e-09 68.9 102 39.2
AUR62043902 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.4e-09 68.9 102 39.2
Peaxi162Scf00456g00033 Petunia axillaris HOM05D004909 ORTHO05D009316 1.9e-09 68.6 109 41.3
Sopen05g027030 Solanum pennellii HOM05D000213 ORTHO05D011567 1.9e-09 68.6 155 31.0
CAN.G7.24 Capsicum annuum HOM05D004909 ORTHO05D009316 1.2e-08 65.9 80 40.0
Oeu057349.1 Olea europaea HOM05D013539 ORTHO05D014921 2.7e-08 64.7 94 41.5
Solyc05g045720.1 Solanum lycopersicum HOM05D004909 ORTHO05D009625 2.7e-08 64.7 131 32.8
ClCG07G016010 Citrullus lanatus HOM05D006604 ORTHO05D007974 6.1e-08 63.5 45 71.1
ClCG06G014670 Citrullus lanatus HOM05D006604 ORTHO05D007974 1.8e-07 62.0 36 86.1
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 1.8e-07 62.0 38 84.2
Medtr0248s0030 Medicago truncatula HOM05D006604 ORTHO05D007974 3.0e-07 61.2 34 91.2
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 3.9e-07 60.8 192 25.0
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 5.1e-07 60.5 54 57.4
Nitab4.5_0005140g0040 Nicotiana tabacum HOM05D004909 ORTHO05D009625 6.7e-07 60.1 76 43.4
unitig_87.g28025 Utricularia gibba HOM05D004909 ORTHO05D009316 6.7e-07 60.1 103 36.9
EL10Ac1g01431 Beta vulgaris HOM05D004909 ORTHO05D009316 1.1e-06 59.3 127 27.6
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 1.9e-06 58.5 36 83.3
ClCG05G022450 Citrullus lanatus HOM05D004909 ORTHO05D009316 2.5e-06 58.2 71 43.7
Nitab4.5_0001796g0070 Nicotiana tabacum HOM05D004909 ORTHO05D009316 3.3e-06 57.8 81 44.4
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 4.3e-06 57.4 31 87.1
AUR62044035 Chenopodium quinoa HOM05D004909 ORTHO05D009316 5.7e-06 57.0 125 28.0
AUR62026824 Chenopodium quinoa HOM05D000533 ORTHO05D001069 7.4e-06 56.6 71 38.0


User provided reference genes

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