Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 7.9e-205 716.8 353 100.0
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.9e-198 695.7 352 97.7
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 6.7e-180 634.0 352 90.3
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 7.2e-166 587.4 352 80.7
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.8e-162 575.5 350 77.7
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.0e-159 567.0 350 76.0
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 2.4e-153 545.8 352 75.6
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 3.2e-153 545.4 352 75.0
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.1e-150 537.0 352 73.0
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 4.3e-150 535.0 352 73.6
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.1e-149 532.7 352 72.2
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 2.8e-149 532.3 352 72.2
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.8e-148 529.6 352 71.6
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 2.6e-147 525.8 352 71.3
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 4.4e-147 525.0 352 70.2
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 1.4e-145 520.0 352 71.3
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.9e-145 519.6 348 72.1
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.1e-145 518.5 351 72.1
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 7.0e-145 517.7 352 69.0
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 7.0e-145 517.7 352 69.3
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 9.2e-145 517.3 352 69.3
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 9.2e-145 517.3 352 69.3
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 3.0e-143 512.3 352 68.8
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 5.0e-143 511.5 352 68.5
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 5.0e-143 511.5 352 68.8
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 5.6e-142 508.1 352 68.8
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.5e-139 500.0 352 66.8
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.2e-136 490.3 352 67.3
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 2.1e-136 489.6 352 65.3
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 2.7e-136 489.2 352 65.3
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 6.0e-136 488.0 352 67.3
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 6.0e-136 488.0 352 67.0
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 6.0e-136 488.0 352 67.3
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 3.0e-135 485.7 352 67.3
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.5e-134 483.4 352 67.0
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 9.5e-134 480.7 352 65.9
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.2e-133 480.3 352 61.9
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 3.6e-133 478.8 352 63.4
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 8.1e-133 477.6 352 62.5
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 2.3e-132 476.1 352 62.8
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 5.2e-132 474.9 351 64.4
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 9.9e-131 470.7 351 62.7
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 1.3e-130 470.3 352 65.3
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 2.2e-130 469.5 351 65.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 2.9e-130 469.2 351 62.4
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.1e-129 467.2 352 61.6
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 2.4e-129 466.1 352 62.8
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 2.4e-129 466.1 352 64.2
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 9.2e-129 464.2 352 60.5
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 2.7e-128 462.6 354 63.3
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 3.5e-128 462.2 351 62.7
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 6.0e-128 461.5 352 60.2
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 7.8e-128 461.1 352 62.5
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 7.8e-128 461.1 352 59.4
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.1e-126 457.2 352 61.6
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 3.6e-125 452.2 353 61.5
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 5.2e-124 448.4 351 63.0
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 5.2e-124 448.4 352 59.9
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 6.9e-124 448.0 356 60.7
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 4.4e-123 445.3 356 60.1
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 8.4e-122 441.0 352 58.8
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.2e-121 439.1 352 60.8
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 4.6e-120 435.3 352 57.4
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.3e-119 433.7 344 59.3
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.9e-118 429.9 347 59.7
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.9e-118 429.9 352 58.0
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 6.9e-116 421.4 352 56.8
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 9.0e-116 421.0 349 58.7
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 3.4e-115 419.1 351 59.5
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 5.8e-115 418.3 353 59.8
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 9.9e-115 417.5 350 58.0
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 2.9e-114 416.0 340 58.5
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 6.4e-114 414.8 340 58.2
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.1e-113 414.1 353 57.5
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.4e-113 413.7 341 59.2
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.9e-113 413.3 347 57.1
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.9e-113 413.3 351 57.5
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 4.2e-113 412.1 352 58.2
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 7.1e-113 411.4 348 56.6
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 3.5e-112 409.1 341 58.4
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 6.7e-111 404.8 343 57.4
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 4.3e-110 402.1 353 53.5
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 6.2e-109 398.3 347 56.8
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 7.6e-107 391.3 352 53.1
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 2.7e-104 382.9 348 50.0
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 4.3e-102 375.6 352 55.7
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 2.4e-100 369.8 363 52.3
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 7.1e-97 358.2 352 53.1
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 7.1e-97 358.2 352 53.1
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.6e-96 357.1 234 70.1
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 5.3e-92 342.0 352 50.6
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.3e-90 337.4 343 51.0
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 3.6e-88 329.3 249 61.0
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 4.6e-88 328.9 352 45.5
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 1.9e-86 323.6 242 62.0
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 6.3e-85 318.5 258 60.9
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.4e-84 316.6 352 47.4
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 6.5e-82 308.5 350 45.4
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.4e-81 307.4 345 46.7
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 2.3e-79 300.1 248 58.9
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 5.1e-79 298.9 352 43.8
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 5.7e-78 295.4 261 56.3
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.2e-75 287.7 352 45.7
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 2.2e-74 283.5 365 40.3
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 2.6e-70 270.0 191 72.8
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 2.6e-67 260.0 201 61.2
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 3.5e-67 259.6 307 42.0
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 6.5e-66 255.4 196 67.3
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 2.5e-65 253.4 340 41.2
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.3e-63 246.9 208 56.7
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.0e-62 243.8 179 67.0
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.0e-62 243.8 161 68.3
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 1.6e-56 224.2 352 39.2
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 5.9e-51 205.7 352 38.1
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 6.6e-42 175.6 200 48.5
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 1.5e-38 164.5 210 41.0
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 5.6e-33 146.0 150 46.7
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 4.7e-32 142.9 79 77.2
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.0e-27 127.5 79 69.6
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.5e-25 121.3 77 67.5
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 1.8e-23 114.4 146 39.7
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 5.6e-17 92.8 111 44.1
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.1e-07 62.0 35 71.4


User provided reference genes

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