Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 3.3e-303 1044.3 541 100.0
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 7.7e-252 873.6 506 92.5
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 2.1e-249 865.5 506 90.9
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.2e-246 855.5 500 90.6
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.1e-245 853.2 500 90.8
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.9e-238 828.6 507 86.0
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 5.4e-237 824.3 473 92.2
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 8.1e-233 810.4 496 88.7
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 6.8e-232 807.4 506 83.2
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.2e-231 806.6 506 83.8
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 3.4e-231 805.1 506 83.4
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 4.4e-231 804.7 512 83.4
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.7e-230 802.7 506 83.2
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 2.9e-230 802.0 507 82.4
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 4.9e-230 801.2 506 83.6
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.4e-229 799.7 504 82.1
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.4e-229 799.7 506 82.2
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 3.2e-229 798.5 501 83.8
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 4.1e-229 798.1 504 82.1
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 7.1e-229 797.3 507 82.1
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.2e-228 796.6 507 82.1
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.1e-228 795.8 507 82.1
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.1e-228 795.8 507 81.9
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 2.7e-228 795.4 506 82.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.5e-228 795.0 504 82.5
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 7.8e-228 793.9 504 81.9
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.0e-227 793.5 508 81.5
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.0e-227 793.5 506 82.2
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.3e-227 793.1 506 81.6
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.3e-227 793.1 508 81.5
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 2.3e-227 792.3 508 81.5
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 3.0e-227 792.0 506 82.4
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.0e-227 792.0 507 81.5
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 6.6e-227 790.8 506 81.6
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.1e-226 790.0 507 80.9
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.1e-226 790.0 499 83.0
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 5.6e-226 787.7 506 81.2
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 9.5e-226 786.9 506 81.0
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.2e-225 786.6 506 81.0
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.6e-225 786.2 506 80.6
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.6e-225 786.2 506 80.6
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.6e-225 786.2 506 80.6
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 2.1e-225 785.8 506 80.6
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.8e-225 785.4 506 82.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.8e-225 785.4 525 79.0
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 3.6e-225 785.0 507 80.5
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 6.2e-225 784.3 506 80.6
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.1e-224 783.5 500 81.8
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.4e-224 783.1 506 81.4
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.8e-224 782.7 506 80.0
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.8e-224 782.7 524 79.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.8e-224 782.7 506 80.6
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 2.3e-224 782.3 501 81.4
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 2.3e-224 782.3 506 80.6
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.1e-224 781.9 504 80.4
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 4.0e-224 781.6 506 80.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 4.0e-224 781.6 506 80.8
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 8.9e-224 780.4 503 80.1
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 8.9e-224 780.4 494 81.2
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.2e-223 780.0 499 80.8
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.0e-223 779.2 498 81.5
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 2.0e-223 779.2 507 80.9
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.0e-223 779.2 504 80.2
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 3.4e-223 778.5 503 80.5
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 7.6e-223 777.3 498 81.1
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 7.6e-223 777.3 507 79.9
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 9.9e-223 776.9 532 78.8
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 9.9e-223 776.9 506 79.6
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.3e-222 776.5 528 78.2
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 2.9e-222 775.4 507 80.1
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 3.8e-222 775.0 507 79.5
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 8.4e-222 773.9 498 80.9
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.1e-221 773.5 507 80.1
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.4e-221 773.1 502 81.3
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.4e-221 773.1 507 79.3
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.4e-221 773.1 484 83.7
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.2e-221 771.9 507 79.7
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 4.1e-221 771.5 505 80.0
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 7.1e-221 770.8 498 80.7
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 7.1e-221 770.8 498 80.7
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.6e-220 769.6 508 79.5
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.1e-220 769.2 502 80.1
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 4.6e-220 768.1 506 78.3
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 6.0e-220 767.7 500 80.2
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 1.7e-219 766.1 502 79.5
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 2.3e-219 765.8 511 78.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.3e-219 765.8 506 79.6
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 5.1e-219 764.6 507 78.5
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.9e-218 762.7 506 79.1
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 2.5e-218 762.3 502 78.7
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 8.1e-217 757.3 504 77.4
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 4.0e-216 755.0 544 75.7
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 5.2e-216 754.6 501 79.2
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.6e-215 752.3 466 84.5
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.6e-215 752.3 506 77.9
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 6.6e-211 737.6 501 78.6
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.1e-210 736.9 469 81.9
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 8.1e-209 730.7 506 76.9
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.8e-208 729.6 465 82.2
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.8e-208 729.6 506 74.9
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 3.5e-204 715.3 436 84.6
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 4.8e-201 704.9 438 82.4
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.1e-200 702.2 507 71.8
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.0e-200 701.8 438 82.4
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 7.6e-199 697.6 496 74.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 6.0e-196 688.0 466 75.5
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.5e-194 683.3 505 70.5
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.0e-191 672.9 437 80.1
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 7.6e-191 671.0 506 69.4
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 7.1e-189 664.5 502 71.9
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.6e-188 661.8 502 69.9
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 5.1e-187 658.3 665 57.6
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.9e-184 647.9 505 66.9
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 5.9e-183 644.8 500 66.8
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.2e-180 637.1 397 83.1
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.5e-178 630.2 440 75.0
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 6.9e-176 621.3 398 79.4
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.3e-170 602.4 436 70.6
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 7.4e-170 601.3 390 79.2
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.7e-169 600.1 414 75.1
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 6.3e-169 598.2 425 72.2
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 8.2e-169 597.8 438 71.0
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.7e-166 590.1 419 72.1
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.7e-164 582.8 426 69.7
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.4e-160 570.5 476 68.1
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.6e-159 567.0 375 80.0
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-154 550.8 506 61.7
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.3e-142 510.8 317 81.7
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 3.8e-142 509.2 509 59.1
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 5.2e-139 498.8 444 64.0
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.2e-130 471.1 286 89.2
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.6e-127 459.1 300 78.7
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.3e-126 456.8 311 77.8
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 4.7e-124 449.1 355 64.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 4.1e-120 436.0 270 81.1
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.3e-118 431.0 368 66.0
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-115 421.4 262 82.8
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 2.6e-114 416.8 495 47.9
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 2.1e-111 407.1 269 79.9
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.2e-80 303.1 504 43.5
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.0e-73 282.0 215 67.0
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.6e-71 274.6 185 75.1
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.8e-67 261.2 494 39.3
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 5.3e-67 259.6 224 62.5
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 2.0e-58 231.1 170 73.5
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 9.7e-53 212.2 143 77.6
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 8.2e-52 209.1 193 57.0
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 7.7e-50 202.6 119 89.9
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.4e-46 191.8 170 61.2
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 9.7e-45 185.7 126 75.4
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.9e-32 144.8 109 71.6
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.1e-31 141.4 94 70.2
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 2.3e-30 137.9 109 71.6
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.8e-30 136.3 109 67.9
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 4.1e-27 127.1 101 69.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 1.6e-26 125.2 78 82.1
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.7e-23 113.6 69 82.6
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 2.3e-22 111.3 70 84.3
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 3.0e-22 110.9 90 57.8
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.5e-21 108.6 110 56.4
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 4.9e-20 103.6 86 69.8
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 7.0e-19 99.8 63 85.7
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.7e-12 78.6 53 75.5
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 2.2e-12 78.2 58 69.0
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.3e-09 68.2 142 33.1
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 7.3e-08 63.2 92 45.7
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.2e-07 62.4 39 79.5
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 4.7e-07 60.5 55 63.6


User provided reference genes

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